ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf55m16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1Os01g0353800:Os01g0353800 30 4.4
2AB118007:Os09g0410300 30 4.4
3AK064203:Os09g0410300 30 4.4
4AY206864:Os06g0140700 29 7.5
5AK105150:Os06g0140700 29 7.5
6AK071939:Os10g0575600 28 9.8
7AB101646:Os10g0575600 28 9.8 
>Os01g0353800:Os01g0353800 |
          Length = 248
 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 788 PDERGGLGREGRPCRRTVGRARGGG--WTETRR 696
           P   G  GRE RP RR +GR  GGG  W E RR
Sbjct: 14  PAGGGRSGREWRPSRR-IGRGGGGGGQWWEGRR 45
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>AB118007:Os09g0410300 |
          Length = 199

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 475 GLASKKMKKETNDKKRRRSEKVAPE 549
           GL +K+ KK+  DKKR R +K  PE
Sbjct: 87  GLETKEKKKDKKDKKRHRDKKDDPE 111
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>AK064203:Os09g0410300 |
          Length = 224

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 475 GLASKKMKKETNDKKRRRSEKVAPE 549
           GL +K+ KK+  DKKR R +K  PE
Sbjct: 112 GLETKEKKKDKKDKKRHRDKKDDPE 136
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>AY206864:Os06g0140700 |
          Length = 308

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 702 SLRPTPTPRSADGAATGSPFPAKATPLVGESRSNRAYKH 818
           SL  + T  S+ GA + SP+ A    +VG+ R ++A  H
Sbjct: 17  SLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAH 55
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>AK105150:Os06g0140700 |
          Length = 308

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 702 SLRPTPTPRSADGAATGSPFPAKATPLVGESRSNRAYKH 818
           SL  + T  S+ GA + SP+ A    +VG+ R ++A  H
Sbjct: 17  SLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAH 55
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>AK071939:Os10g0575600 |
          Length = 882

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 358 CTRKSPTWIRSKSFRVSLISKHNKDFSW 441
           C    P W+R +   V  + +H + FSW
Sbjct: 362 CRAGEPLWVRQRGAEVMAVEEHARMFSW 389
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>AB101646:Os10g0575600 |
          Length = 882

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 358 CTRKSPTWIRSKSFRVSLISKHNKDFSW 441
           C    P W+R +   V  + +H + FSW
Sbjct: 362 CRAGEPLWVRQRGAEVMAVEEHARMFSW 389


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 35,076,004
Number of extensions: 805247
Number of successful extensions: 2365
Number of sequences better than 10.0: 7
Number of HSP's gapped: 2361
Number of HSP's successfully gapped: 7
Length of query: 399
Length of database: 15,399,855
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,275,632
Effective search space: 3337587072
Effective search space used: 3337587072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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