| Clone Name | FLbaf59f10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence Length = 118971 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 512 accccaaacccctcctcctcct 533 |||||||||||||||||||||| Sbjct: 91665 accccaaacccctcctcctcct 91686
>gb|AC010857.8| Homo sapiens chromosome 8, clone RP11-301G7, complete sequence Length = 155064 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1096 ttggaattaagctatttattta 1117 |||||||||||||||||||||| Sbjct: 72981 ttggaattaagctatttattta 73002
>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168186 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1099 gaattaagctatttatttacac 1120 |||||||||||||||||||||| Sbjct: 161158 gaattaagctatttatttacac 161137
>emb|AL355572.13| Human DNA sequence from clone RP11-366I22 on chromosome 13, complete sequence Length = 81324 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 469 aagctcctttttctccacaacc 490 |||||||||||||||||||||| Sbjct: 41281 aagctcctttttctccacaacc 41260
>gb|AC090686.4| Homo sapiens chromosome 8, clone RP11-771F20, complete sequence Length = 197065 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1044 aagagtaatgtgaggaaactaa 1065 |||||||||||||||||||||| Sbjct: 74317 aagagtaatgtgaggaaactaa 74296
>gb|AC009710.6|AC009710 Homo sapiens chromosome 8, clone RP11-328M16, complete sequence Length = 44603 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1044 aagagtaatgtgaggaaactaa 1065 |||||||||||||||||||||| Sbjct: 33499 aagagtaatgtgaggaaactaa 33478
>dbj|AP006264.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1334D10, complete sequence Length = 164084 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1044 aagagtaatgtgaggaaactaa 1065 |||||||||||||||||||||| Sbjct: 15005 aagagtaatgtgaggaaactaa 14984
>emb|AL355096.4|CNS05TCF Human chromosome 14 DNA sequence BAC R-168L7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189389 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 520 cccctcctcctccttccggcccctac 545 ||||||||||||||||| |||||||| Sbjct: 141921 cccctcctcctccttccagcccctac 141896
>emb|CU041291.4| Human DNA sequence from clone XX-DSH1_27J20, complete sequence Length = 135654 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1450 atattgtactgagaattttat 1470 ||||||||||||||||||||| Sbjct: 131244 atattgtactgagaattttat 131264
>emb|CR855236.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0157K09-H0214G12, complete sequence Length = 163903 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgagcggccaggcgaagcggt 25 ||||||||||||||||||||| Sbjct: 62465 cgagcggccaggcgaagcggt 62445
>ref|NM_001059819.1| Oryza sativa (japonica cultivar-group) Os04g0510200 (Os04g0510200) mRNA, partial cds Length = 1515 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgagcggccaggcgaagcggt 25 ||||||||||||||||||||| Sbjct: 307 cgagcggccaggcgaagcggt 287
>ref|NM_001057099.1| Oryza sativa (japonica cultivar-group) Os03g0583900 (Os03g0583900) mRNA, complete cds Length = 4705 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 259 ccccaaacccctcctcctcct 279
>ref|XR_014658.1| PREDICTED: Macaca mulatta similar to Zinc finger and BTB domain-containing protein 7A (Leukemia/lymphoma related factor) (Factor that binds to inducer of short transcripts protein 1) (Factor binding IST protein 1) (FBI-1) (HIV-1 1st-binding protein 1) (TTF-I-interacting pep... (LOC721817), mRNA Length = 5673 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 397 cgacctcgtctccccaaccccggcc 421 |||| |||||||||||||||||||| Sbjct: 4299 cgacatcgtctccccaaccccggcc 4275
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tcgctcgtcaccgaggcgccc 246 ||||||||||||||||||||| Sbjct: 1358532 tcgctcgtcaccgaggcgccc 1358552
>gb|DQ423073.2| Physalis sp. TA1367 Length = 575 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 tgaagctcctttttctccaca 487 ||||||||||||||||||||| Sbjct: 316 tgaagctcctttttctccaca 296
>gb|DQ423078.2| Nicotiana tomentosiformis cultivar TA3349 Length = 665 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 tgaagctcctttttctccaca 487 ||||||||||||||||||||| Sbjct: 351 tgaagctcctttttctccaca 331
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 16096 ccccaaacccctcctcctcct 16076
>gb|AC090330.22| Homo sapiens chromosome 18, clone RP11-813B21, complete sequence Length = 160530 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1346 ccatctgcagccaaaatgatt 1366 ||||||||||||||||||||| Sbjct: 14680 ccatctgcagccaaaatgatt 14700
>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence Length = 208757 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1036 tcatgaacaagagtaatgtga 1056 ||||||||||||||||||||| Sbjct: 120032 tcatgaacaagagtaatgtga 120012
>gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, complete sequence Length = 174535 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1346 ccatctgcagccaaaatgatt 1366 ||||||||||||||||||||| Sbjct: 133449 ccatctgcagccaaaatgatt 133469
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 cgccgcttcctccctccctcg 582 ||||||||||||||||||||| Sbjct: 15885811 cgccgcttcctccctccctcg 15885791
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 8606798 ccccaaacccctcctcctcct 8606778
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgagcggccaggcgaagcggt 25 ||||||||||||||||||||| Sbjct: 25500412 cgagcggccaggcgaagcggt 25500392
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 21316214 ccccaaacccctcctcctcct 21316194
>ref|XM_688308.1| PREDICTED: Danio rerio similar to sidekick-2 (LOC564998), mRNA Length = 2214 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ccctcctcctccttccggccc 541 ||||||||||||||||||||| Sbjct: 42 ccctcctcctccttccggccc 62
>emb|AL353682.11| Human DNA sequence from clone RP11-203D19 on chromosome 9 Contains the 3' end of the TLE1 gene for transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), complete sequence Length = 90331 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 acgccgcttcctccctccctc 581 ||||||||||||||||||||| Sbjct: 60344 acgccgcttcctccctccctc 60364
>emb|AL139382.12| Human DNA sequence from clone RP11-86N24 on chromosome 13 Contains the TNFSF11 gene for tumor necrosis factor (ligand) superfamily, member 11 and a CpG island, complete sequence Length = 200724 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 ggaggcaacacaagaggaggaggag 282 |||||||||| |||||||||||||| Sbjct: 186925 ggaggcaacagaagaggaggaggag 186949
>emb|AL138703.10| Human DNA sequence from clone RP11-413N19 on chromosome 13 Contains FABP3P2 for fatty acid binding protein 3 pseudogene 2 (FABP3P, FABP3-PS), complete sequence Length = 129866 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 ggaggcaacacaagaggaggaggag 282 |||||||||| |||||||||||||| Sbjct: 87790 ggaggcaacagaagaggaggaggag 87814
>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32 Contains STSs and GSSs, complete sequence Length = 131238 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 agctcctttttctccacaacc 490 ||||||||||||||||||||| Sbjct: 93602 agctcctttttctccacaacc 93582
>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13, complete sequence Length = 103039 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgagcggccaggcgaagcggt 25 ||||||||||||||||||||| Sbjct: 77905 cgagcggccaggcgaagcggt 77885
>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence Length = 198637 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1450 atattgtactgagaattttat 1470 ||||||||||||||||||||| Sbjct: 112668 atattgtactgagaattttat 112688
>gb|AC007281.3| Homo sapiens BAC clone RP11-457F14 from 2, complete sequence Length = 179343 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1355 gccaaaatgatttacatttgt 1375 ||||||||||||||||||||| Sbjct: 168570 gccaaaatgatttacatttgt 168550
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 128008 ccccaaacccctcctcctcct 127988
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 36594 ccccaaacccctcctcctcct 36574
>emb|BX890565.9| Zebrafish DNA sequence from clone CH211-250G22, complete sequence Length = 120394 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 ccctcctcctccttccggccc 541 ||||||||||||||||||||| Sbjct: 61764 ccctcctcctccttccggccc 61744
>dbj|AK108706.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A06, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgagcggccaggcgaagcggt 25 ||||||||||||||||||||| Sbjct: 307 cgagcggccaggcgaagcggt 287
>dbj|AK072334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044C15, full insert sequence Length = 4706 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 260 ccccaaacccctcctcctcct 280
>dbj|AK066278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062H12, full insert sequence Length = 3825 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 ccccaaacccctcctcctcct 533 ||||||||||||||||||||| Sbjct: 134 ccccaaacccctcctcctcct 154
>emb|AL935034.18| Zebrafish DNA sequence from clone CH211-160A3 in linkage group 12, complete sequence Length = 171213 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 ccctcctcctccttccggccc 541 ||||||||||||||||||||| Sbjct: 156076 ccctcctcctccttccggccc 156056
>emb|AL731754.3|CNS08C83 Oryza sativa chromosome 12, . BAC OJ1016_H08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113212 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 cgccgcttcctccctccctcg 582 ||||||||||||||||||||| Sbjct: 51623 cgccgcttcctccctccctcg 51643
>emb|AL772171.7| Mouse DNA sequence from clone RP23-36B3 on chromosome 4, complete sequence Length = 209864 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1355 gccaaaatgatttacatttgt 1375 ||||||||||||||||||||| Sbjct: 1086 gccaaaatgatttacatttgt 1066
>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete sequence Length = 161389 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1355 gccaaaatgatttacatttgt 1375 ||||||||||||||||||||| Sbjct: 160475 gccaaaatgatttacatttgt 160455 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 228,967,477 Number of extensions: 13618591 Number of successful extensions: 367106 Number of sequences better than 10.0: 42 Number of HSP's gapped: 367106 Number of HSP's successfully gapped: 42 Length of query: 1541 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1518 Effective length of database: 18,503,978,556 Effective search space: 28089039448008 Effective search space used: 28089039448008 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)