ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf55k22 |
|---|---|
| Clone Library Name | barley_pub |
>Q9BXT8:RNF17_HUMAN RING finger protein 17 - Homo sapiens (Human)| Length = 653 Score = 36.2 bits (82), Expect = 0.18 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Frame = +1 Query: 256 GAANVRCSRCNMLNSTRSASQYAHLKCGG--CRTTLMYPPGASTVGCATCHHVNPVRAQG 429 GAA ++C+RC +RS+ + L+CG C L+ +T+ C C V + Sbjct: 26 GAAEIQCTRCGR-RVSRSSGHHCELQCGHAFCELCLLMTEECTTIICPDCEVATAVNTRQ 84 Query: 430 SSAPPDAHARPQTVLVE-NPRTMND 501 P + + +++ + P+T+ + Sbjct: 85 RYYPMAGYIKEDSIMEKLQPKTIKN 109
>Q4R8W3:TNAP3_MACFA Tumor necrosis factor, alpha-induced protein 3 - Macaca| fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 790 Score = 33.9 bits (76), Expect = 0.88 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Frame = +1 Query: 226 GC-FSLVLYNRGAANVRCSRCNMLNSTRSASQYAHLKCGGCRTTLMYPPGASTVGCATCH 402 GC F+L + + G RC L+++ +A HL G C+ L C+TC Sbjct: 482 GCPFTLNVQHNGFCE-RCHNARQLHASHAADHTRHLDPGKCQACLQDVTRTFNGICSTCF 540 Query: 403 HVNPVRAQGS---SAPPDAHARPQT 468 A S S PP H R ++ Sbjct: 541 KRTTAEASSSLSTSLPPSCHQRSKS 565
>P20850:CO9A1_RAT Collagen alpha-1(IX) chain - Rattus norvegicus (Rat)| Length = 325 Score = 32.3 bits (72), Expect = 2.6 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 363 PAGGL-HRGVRHVPSRQPRQSPGLLGSSGCPCPASDSSRGESQDNERQGQTG 515 P G L +G R P R P+ PG +G G P PAS G + G G Sbjct: 237 PKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAG 288
>Q05722:CO9A1_MOUSE Collagen alpha-1(IX) chain precursor - Mus musculus (Mouse)| Length = 921 Score = 32.3 bits (72), Expect = 2.6 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 363 PAGGL-HRGVRHVPSRQPRQSPGLLGSSGCPCPASDSSRGESQDNERQGQTG 515 P G L +G R P R P+ PG +G G P PAS G + G G Sbjct: 833 PKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAG 884
>O94819:KBTBB_HUMAN Kelch repeat and BTB domain-containing protein 11 - Homo sapiens| (Human) Length = 623 Score = 32.3 bits (72), Expect = 2.6 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Frame = +1 Query: 325 HLKCGGCRTTLMYPPGASTVGCATCHHVNPVRAQGSSAP--PDAHARP-QTVLVENPRT 492 H G R P GA GC C N + G AP PD ARP V NP T Sbjct: 331 HAAAGEWRELTRLPEGAPARGCGLCVLYNYLFVAGGVAPAGPDGRARPSDQVFCYNPAT 389
>P21580:TNAP3_HUMAN Tumor necrosis factor, alpha-induced protein 3 - Homo sapiens| (Human) Length = 790 Score = 32.0 bits (71), Expect = 3.4 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Frame = +1 Query: 226 GC-FSLVLYNRGAANVRCSRCNMLNSTRSASQYAHLKCGGCRTTLMYPPGASTVGCATCH 402 GC F+L + + G RC L+++ + HL G C+ L C+TC Sbjct: 482 GCPFTLNVQHNGFCE-RCHNARQLHASHAPDHTRHLDPGKCQACLQDVTRTFNGICSTCF 540 Query: 403 HVNPVRAQGS---SAPPDAHARPQT 468 A S S PP H R ++ Sbjct: 541 KRTTAEASSSLSTSLPPSCHQRSKS 565
>P20849:CO9A1_HUMAN Collagen alpha-1(IX) chain precursor - Homo sapiens (Human)| Length = 921 Score = 31.6 bits (70), Expect = 4.4 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +3 Query: 363 PAGGL-HRGVRHVPSRQPRQSPGLLGSSGCPCPASDSSRGESQDNERQGQTG 515 P G L +G R P R P PG +G G P PAS G + G G Sbjct: 833 PKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGKNGRDGERGPPGLAG 884
>Q8C3L1:CC032_MOUSE Uncharacterized protein C3orf32 homolog - Mus musculus (Mouse)| Length = 340 Score = 31.6 bits (70), Expect = 4.4 Identities = 19/60 (31%), Positives = 22/60 (36%) Frame = +1 Query: 220 CNGCFSLVLYNRGAANVRCSRCNMLNSTRSASQYAHLKCGGCRTTLMYPPGASTVGCATC 399 C+GC GA VRCS C+ + HL G R G CATC Sbjct: 189 CSGC-------HGAGMVRCSSCSGTKRKAKQPRRCHLCSGSGRRRCSTCSGRGNKTCATC 241
>Q04649:CDX2_MESAU Homeobox protein CDX-2 - Mesocricetus auratus (Golden hamster)| Length = 313 Score = 31.2 bits (69), Expect = 5.7 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +1 Query: 361 YPPGASTVGCATCHHVN---PVRAQGSSAPPDAHA 456 YPPG + A H +N P A G S+P D HA Sbjct: 80 YPPGGAAAANAVAHGLNGGSPAAAMGYSSPADYHA 114
>Q9GL10:ACRO_SHEEP Acrosin precursor - Ovis aries (Sheep)| Length = 329 Score = 30.8 bits (68), Expect = 7.4 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Frame = -2 Query: 461 GRAWASGGAEEPWALTGLT*WHVAHPTVEAPGGYMSVVRQPPHFRWAY--WLADLVELSM 288 G AE + + G+T W V + PG Y S W+Y W+A + + Sbjct: 240 GPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTST--------WSYLNWIASKIGSTA 291 Query: 287 LHREQRTLAAP 255 +H Q A+P Sbjct: 292 VHMIQLPTASP 302
>Q7ZX22:WDR24_XENLA WD repeat protein 24 - Xenopus laevis (African clawed frog)| Length = 780 Score = 30.8 bits (68), Expect = 7.5 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Frame = +1 Query: 244 LYNRGAANVRCSRCNMLNSTRSASQYAHLKCGGCRTTLMYPP------GASTVGCATCHH 405 L+N ++ S C+ +N AS H+ C C+ + CA CHH Sbjct: 679 LWNVSNQVIKLSTCSSINCLNQASTTLHVNCSNCKRPMSNKGWICDRCRQCASMCAVCHH 738 Query: 406 V 408 V Sbjct: 739 V 739
>Q5ZMV9:WDR24_CHICK WD repeat protein 24 - Gallus gallus (Chicken)| Length = 705 Score = 30.4 bits (67), Expect = 9.8 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Frame = +1 Query: 244 LYNRGAANVRCSRCNMLNSTRSASQYAHLKCGGCRTTLMYPP------GASTVGCATCHH 405 L+N ++ S C +N AS H+ C C+ + CA CHH Sbjct: 604 LWNISNEVIKLSTCRAINCLNQASTTLHINCSNCKRPMSNRGWICDRCRQCASMCAVCHH 663 Query: 406 V 408 V Sbjct: 664 V 664 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 127,444,261 Number of extensions: 2615658 Number of successful extensions: 7302 Number of sequences better than 10.0: 12 Number of HSP's gapped: 7294 Number of HSP's successfully gapped: 12 Length of query: 292 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 180 Effective length of database: 69,965,399 Effective search space: 12593771820 Effective search space used: 12593771820 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
