Clone Information

BLAST Search Result

Clone Name	FLbaf55i03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Q5A449:RU2A_CANAL U2 small nuclear ribonucleoprotein A' - Candid...	35	0.59
2	P55824:FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase ...	32	3.8
3	Q4TUC0:RTBDN_CANFA Retbindin precursor - Canis familiaris (Dog)	31	8.5

>Q5A449:RU2A_CANAL U2 small nuclear ribonucleoprotein A' - Candida albicans (Yeast)|
          Length = 233
 Score = 34.7 bits (78), Expect = 0.59
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 699 NGSVCLFLSG*HISYYMDQAIPSQIQITNSTLFYFSPYK----YNNELPLLTTYI 851
           N   CL LS  +ISY  D++ PS   IT+ TLF  + Y+    + ++ P L T I
Sbjct: 64  NNLQCLLLSNNNISYIDDESFPSDNHITSITLFNNNIYQFQKSFKDKFPKLETLI 118

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>P55824:FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF - Drosophila|
            melanogaster (Fruit fly)
          Length = 2778

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 260  REPLRIFYESLSKQIPSSEMAQFWLMEHGLLSP 358
            R P+  +Y++LS  I SS + + W   H LLSP
Sbjct: 2165 RGPVMEWYDALSHHIRSSALVRKWFANHALLSP 2197

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>Q4TUC0:RTBDN_CANFA Retbindin precursor - Canis familiaris (Dog)|
          Length = 223

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 92  YPRTWRRRTWLKQLPAQGSRRGKGRG 15
           +PR+ R RTW+   P  GS  G G G
Sbjct: 197 FPRSRRSRTWILDAPGSGSGSGSGSG 222


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 115,725,131
Number of extensions: 1883304
Number of successful extensions: 5545
Number of sequences better than 10.0: 3
Number of HSP's gapped: 5545
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 206
Effective length of database: 69,691,104
Effective search space: 14356367424
Effective search space used: 14356367424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result