ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf53c02 |
|---|---|
| Clone Library Name | barley_pub |
>P90666:TXND3_ANTCR Thioredoxin domain-containing protein 3 homolog - Anthocidaris| crassispina (Sea urchin) Length = 837 Score = 34.7 bits (78), Expect = 0.47 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Frame = -3 Query: 521 ERLHGPQLRISSVKTDLLASQPHG*DGKRPGE-QTERRRGL---QAAVVPEPDVTESHDA 354 E L G +++ S + SQ G +G+ GE QTE+ G Q A P + E Sbjct: 626 EVLPGGEVKDSVASISMEQSQVKG-EGEEGGEEQTEQPAGEGEEQQAEQPAAESGEQQAE 684 Query: 353 GGQP-----DDAGEQREHHEKA-GGEVPDRKEYWVEMRRETQLGAYDEALVD--GEVDRP 198 GG+P + GEQ+ A GGE P +E + +E + A DEA + E + P Sbjct: 685 GGEPATETATEGGEQQAEQPPAEGGEKPAEEE--TQQTQEGETPAADEAQAEQTQEGETP 742 Query: 197 PADD 186 AD+ Sbjct: 743 AADE 746 Score = 33.5 bits (75), Expect = 1.1 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 13/105 (12%) Frame = -3 Query: 461 QPHG*DGKRPGEQTERRRGLQAAVVPEPDVTESHDAGGQ------PDDAGE---QREHHE 309 QP G ++ EQ G Q A EP TE+ GG+ P + GE + E + Sbjct: 661 QPAGEGEEQQAEQPAAESGEQQAEGGEP-ATETATEGGEQQAEQPPAEGGEKPAEEETQQ 719 Query: 308 KAGGEVPDRKEYWVEMRRETQLGAYDEALV----DGEVDRPPADD 186 GE P E E +E + A DEA +GE +P ++ Sbjct: 720 TQEGETPAADEAQAEQTQEGETPAADEAQAEQTQEGEEQKPAEEE 764
>P21263:NEST_RAT Nestin - Rattus norvegicus (Rat)| Length = 1893 Score = 34.7 bits (78), Expect = 0.47 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 28/139 (20%) Frame = -3 Query: 548 ELRHC*GYRER--LHGPQLRISSVKTDLLASQPHG*DGKRPGE-QTERRRGLQAAVV--- 387 E C G+ E + G + +S++T S G D +P +TE G QAA+ Sbjct: 1447 EALECQGHEESESMEGWEEEEASLET----SDHEGSDAPQPRPPETEEDEGAQAALTAPG 1502 Query: 386 --------PEPDVTESHD----------AGGQPDDAGEQREHHEKAG----GEVPDRKEY 273 P P +T++H+ AG QP+ E E E GE+P+ + Sbjct: 1503 PKLLEPCSPIPILTDAHELQPQAEGIQEAGWQPEAGSEALERVENEPEFGLGEIPEGLQD 1562 Query: 272 WVEMRRETQLGAYDEALVD 216 W E R E++ E L D Sbjct: 1563 WEEGREESEADDLGETLPD 1581
>Q6P5H2:NEST_MOUSE Nestin - Mus musculus (Mouse)| Length = 1864 Score = 33.1 bits (74), Expect = 1.4 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 26/137 (18%) Frame = -3 Query: 548 ELRHC*GYRERLHGPQLRISSVKTDLLASQPHG*DGKRPGE-QTERRRGLQAAVV----- 387 E C G+ E G +S++T S G +P +TE GLQAA+ Sbjct: 1420 ETLECKGWEESGEGWGEEEASLET----SDHEGSHAPQPRPPKTEEDEGLQAALTVPGPK 1475 Query: 386 ------PEPDVTESHD----------AGGQPDDA----GEQREHHEKAGGEVPDRKEYWV 267 P P +T++H+ AG QP+ G + E GE+P+ + W Sbjct: 1476 LLEPCSPIPILTDAHELQPQAEGIQEAGWQPEAGTEALGRVEDEPEFGRGEIPEGLQDWE 1535 Query: 266 EMRRETQLGAYDEALVD 216 E R +++ E L D Sbjct: 1536 EGREDSEADELGETLPD 1552
>Q8BIY1:GPTC3_MOUSE G patch domain-containing protein 3 - Mus musculus (Mouse)| Length = 525 Score = 33.1 bits (74), Expect = 1.4 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -3 Query: 428 EQTERRRGLQAAVVPEPDVTESHDAGG--QPDDAGEQREHHEKAGGEV-PDRKEYW 270 EQ E + +P+ +E AG +P+D G+Q+E E++G E DR E W Sbjct: 246 EQEEHVYTAEGEEIPQGSCSEDPAAGSFDEPEDEGQQQEEEEESGSEEDDDRGEEW 301
>Q4L7C4:CRCB1_STAHJ Protein crcB homolog 1 - Staphylococcus haemolyticus (strain| JCSC1435) Length = 117 Score = 32.7 bits (73), Expect = 1.8 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Frame = +3 Query: 78 GGILRKYVRSAEMADNLKPVALFLLMLNFCMYLILAIIGGWAVNFAIDQGFIIGPELRLP 257 G ++R ++ + P+ + L++N ++ + G A ++ + F I L Sbjct: 14 GAVIRAWLTDVFKSKITSPIPIATLIVNLVGSFLIGFVYGIAQDYQLFSLFFITGVLGGL 73 Query: 258 AHFHPIFFPIGNFATGFF-----VVFSLLAGVVGLASCIVGFS 371 F + + I F + F +S+L V+G SC +G+S Sbjct: 74 TTFSTLSYEIVQFISPSFKPVQFFSYSILQFVIGFISCFIGYS 116
>P63966:DNAJ2_MYCTU Chaperone protein dnaJ 2 - Mycobacterium tuberculosis| Length = 382 Score = 32.0 bits (71), Expect = 3.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 635 PPTRSAAQGVVPFDLDGAVTARLDHEDVEELRHC*GYRER 516 P RS +G + ++ V RLDH+D+E LR G R+R Sbjct: 317 PHLRSNTRGDLHVHVEVVVPTRLDHQDIELLRELKGRRDR 356
>P63967:DNAJ2_MYCBO Chaperone protein dnaJ 2 - Mycobacterium bovis| Length = 382 Score = 32.0 bits (71), Expect = 3.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 635 PPTRSAAQGVVPFDLDGAVTARLDHEDVEELRHC*GYRER 516 P RS +G + ++ V RLDH+D+E LR G R+R Sbjct: 317 PHLRSNTRGDLHVHVEVVVPTRLDHQDIELLRELKGRRDR 356
>Q9N2G5:CLIC6_RABIT Chloride intracellular channel 6 - Oryctolagus cuniculus (Rabbit)| Length = 637 Score = 32.0 bits (71), Expect = 3.1 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = -3 Query: 446 DGKRPGEQTERRRGLQAAVVPEPDVTESHDAGGQPDDAGE-QREHHEKAGGEVPDRKEYW 270 +G PGE E +AA EP+ +E DA G+ D G Q E ++A + P + Sbjct: 281 EGHSPGESVEDAAAEEAAGTREPEGSE--DAAGEDGDQGRPQEETEQQAERQEPGPETQS 338 Query: 269 VEMRRETQLGAYDEALVDGEVDRPPAD 189 E R EA +P A+ Sbjct: 339 EEEERPPDRSPDGEAAASTRAAQPEAE 365
>Q4G061:IF39_RAT Eukaryotic translation initiation factor 3 subunit 9 - Rattus| norvegicus (Rat) Length = 797 Score = 31.6 bits (70), Expect = 4.0 Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 4/88 (4%) Frame = -3 Query: 437 RPGEQTERRRGLQAAVVPEPDVTESHDAGGQPDDAGEQREH----HEKAGGEVPDRKEYW 270 +P Q+E A P P + A G+ + GEQ H E+ GG E Sbjct: 63 KPAAQSEEETAASPAASPTPQSAQEPSAPGKAEAGGEQARHPSARAEEEGGSDGSAAE-- 120 Query: 269 VEMRRETQLGAYDEALVDGEVDRPPADD 186 A AL +GE D P D Sbjct: 121 ----------AEPRALENGEADEPSFSD 138
>O43491:E41L2_HUMAN Band 4.1-like protein 2 - Homo sapiens (Human)| Length = 1005 Score = 31.2 bits (69), Expect = 5.2 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -3 Query: 443 GKRPGEQTERRRGLQAAVVPEPDVTESHDAGGQPDDAGEQREHHEKAGGEVPDRKEYWVE 264 G PGE + Q + S + + +D GE R HH G + + +EY E Sbjct: 717 GSGPGEIRKVEPVTQKDSTSLSSESSSSSSESEEEDVGEYRPHHRVTEGTIREEQEYEEE 776 Query: 263 MRRETQLGA 237 + E + A Sbjct: 777 VEEEPRPAA 785
>Q03560:YKD1_CAEEL TPR repeat-containing protein B0464.2 - Caenorhabditis elegans| Length = 1150 Score = 30.4 bits (67), Expect = 8.9 Identities = 30/94 (31%), Positives = 43/94 (45%) Frame = -3 Query: 560 EDVEELRHC*GYRERLHGPQLRISSVKTDLLASQPHG*DGKRPGEQTERRRGLQAAVVPE 381 E VEE R G R+R + + +D A G +G GE+ ERR+ +AA Sbjct: 930 EIVEEKRRGGGGRKRRNDDGDEFVNDSSD--AGNYDGEEGGEDGERRERRKKDKAAKKAS 987 Query: 380 PDVTESHDAGGQPDDAGEQREHHEKAGGEVPDRK 279 E D+GG PD +R+ ++ E DRK Sbjct: 988 RKKRERRDSGG-PD--SNRRDEKKRKRKEERDRK 1018 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 142,556,262 Number of extensions: 3142738 Number of successful extensions: 8682 Number of sequences better than 10.0: 11 Number of HSP's gapped: 8678 Number of HSP's successfully gapped: 12 Length of query: 277 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 165 Effective length of database: 69,965,399 Effective search space: 11544290835 Effective search space used: 11544290835 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
