ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf53c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001049115.1| Oryza sativa (japonica cultivar-group) Os01g... 276 1e-70
2dbj|AK109164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 1e-70
3gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 103 1e-18
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 1e-18
5dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic D... 103 1e-18
6dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic D... 103 1e-18
7gb|CP000384.1| Mycobacterium sp. MCS, complete genome 48 0.051
8ref|NM_001063877.1| Oryza sativa (japonica cultivar-group) Os06g... 46 0.20
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.20
10emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 46 0.20
11dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.20
12dbj|AK109719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.20
13emb|CT837543.1| Oryza sativa (indica cultivar-group) cDNA clone:... 44 0.79
14gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.79
15gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.79
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.79
17gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 3.1
18gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 42 3.1
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 3.1
20emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 3.1
21gb|AC097347.6| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer... 42 3.1
22gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complet... 42 3.1
23gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, comple... 42 3.1

>ref|NM_001049115.1| Oryza sativa (japonica cultivar-group) Os01g0247900 (Os01g0247900)
           mRNA, complete cds
          Length = 894
 Score =  276 bits (139), Expect = 1e-70
 Identities = 379/459 (82%)
 Strand = Plus / Plus

                                                                       
Query: 108 gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
           ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 99  gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 158

                                                                       
Query: 168 atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
           |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 159 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 218

                                                                       
Query: 228 ttcatcataggccccgagctgcgtctcccggcgcatttccacccaatattctttccgatc 287
           |||||| ||||||| |   |||| || ||||||||||||||||| || ||||| ||||||
Sbjct: 219 ttcatcctaggcccgggattgcggctgccggcgcatttccacccgatgttcttcccgatc 278

                                                                       
Query: 288 gggaacttcgccaccggctttttcgtggtgttctcgctgctcgccggcgtcgtcgggttg 347
           || ||||  || || || || ||||| |||||||||||||||||||||||||||||  | 
Sbjct: 279 ggcaactgggcaacggggttcttcgtcgtgttctcgctgctcgccggcgtcgtcggcatc 338

                                                                       
Query: 348 gcctcctgcatcgtgggattcagtcacgtccggttctggaactacagcagcctgcagtcc 407
           |||||| || |||| || ||||| ||| ||||   ||||||||||  |  ||||||| | 
Sbjct: 339 gcctccggcctcgtcgggttcagccacatccgccactggaactactactccctgcagccg 398

                                                                       
Query: 408 gcggcgtcgctcggtctgctcgcctgggcgcttaccgtcttagccatggggctggcttgc 467
           |||||| |   ||| ||||| ||||||||||| |||||| | |||||||||||||| |||
Sbjct: 399 gcggcgaccaccggcctgcttgcctgggcgctcaccgtccttgccatggggctggcgtgc 458

                                                                       
Query: 468 caggagatcagttttgaccgaagaaatgcgaagctggggaccatggaggcgttcacgata 527
           |||||||||||| | ||| || | || ||||||||||| |||||||||||||||||||| 
Sbjct: 459 caggagatcagtctcgacagacgcaacgcgaagctgggaaccatggaggcgttcacgatc 518

                                                  
Query: 528 gccctaacagtgacgcagctcttctacatcctcgtgatc 566
           | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 519 gtcctgacggcgacgcagctcttctacgtcctcgcgatc 557



to top

>dbj|AK109164.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G11, full
           insert sequence
          Length = 895

 Score =  276 bits (139), Expect = 1e-70
 Identities = 379/459 (82%)
 Strand = Plus / Plus

                                                                       
Query: 108 gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
           ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 100 gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 159

                                                                       
Query: 168 atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
           |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 160 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 219

                                                                       
Query: 228 ttcatcataggccccgagctgcgtctcccggcgcatttccacccaatattctttccgatc 287
           |||||| ||||||| |   |||| || ||||||||||||||||| || ||||| ||||||
Sbjct: 220 ttcatcctaggcccgggattgcggctgccggcgcatttccacccgatgttcttcccgatc 279

                                                                       
Query: 288 gggaacttcgccaccggctttttcgtggtgttctcgctgctcgccggcgtcgtcgggttg 347
           || ||||  || || || || ||||| |||||||||||||||||||||||||||||  | 
Sbjct: 280 ggcaactgggcaacggggttcttcgtcgtgttctcgctgctcgccggcgtcgtcggcatc 339

                                                                       
Query: 348 gcctcctgcatcgtgggattcagtcacgtccggttctggaactacagcagcctgcagtcc 407
           |||||| || |||| || ||||| ||| ||||   ||||||||||  |  ||||||| | 
Sbjct: 340 gcctccggcctcgtcgggttcagccacatccgccactggaactactactccctgcagccg 399

                                                                       
Query: 408 gcggcgtcgctcggtctgctcgcctgggcgcttaccgtcttagccatggggctggcttgc 467
           |||||| |   ||| ||||| ||||||||||| |||||| | |||||||||||||| |||
Sbjct: 400 gcggcgaccaccggcctgcttgcctgggcgctcaccgtccttgccatggggctggcgtgc 459

                                                                       
Query: 468 caggagatcagttttgaccgaagaaatgcgaagctggggaccatggaggcgttcacgata 527
           |||||||||||| | ||| || | || ||||||||||| |||||||||||||||||||| 
Sbjct: 460 caggagatcagtctcgacagacgcaacgcgaagctgggaaccatggaggcgttcacgatc 519

                                                  
Query: 528 gccctaacagtgacgcagctcttctacatcctcgtgatc 566
           | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 520 gtcctgacggcgacgcagctcttctacgtcctcgcgatc 558



to top

>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score =  103 bits (52), Expect = 1e-18
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                          
Query: 255    ccggcgcatttccacccaatattctttccgatcgggaacttcgccaccggctttttcgtg 314
              ||||||||||||||||| || ||||| |||||||| ||||  || || || || ||||| 
Sbjct: 110652 ccggcgcatttccacccgatgttcttcccgatcggcaactgggcaacggggttcttcgtc 110593

                                                                          
Query: 315    gtgttctcgctgctcgccggcgtcgtcgggttggcctcctgcatcgtgggattcagtcac 374
              |||||||||||||||||||||||||||||  | |||||| || |||| || ||||| |||
Sbjct: 110592 gtgttctcgctgctcgccggcgtcgtcggcatcgcctccggcctcgtcgggttcagccac 110533

                                                                          
Query: 375    gtccggttctggaactacagcagcctgcagtccgcggcgtcgctcggtctgctcgcctgg 434
               ||||   ||||||||||  |  ||||||| | |||||| |   ||| ||||| ||||||
Sbjct: 110532 atccgccactggaactactactccctgcagccggcggcgaccaccggcctgcttgcctgg 110473

                                      
Query: 435    gcgcttaccgtcttagccatgggg 458
              ||||| |||||| | |||||||||
Sbjct: 110472 gcgctcaccgtccttgccatgggg 110449



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                          
Query: 108    gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
              ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 111082 gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 111023

                                                                          
Query: 168    atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
              |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 111022 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 110963

                         
Query: 228    ttcatcatagg 238
              |||||| ||||
Sbjct: 110962 ttcatcctagg 110952



 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 507    accatggaggcgttcacgatagccctaacagtgacgcagctcttctacatcctcgtgatc 566
              |||||||||||||||||||| | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 109959 accatggaggcgttcacgatcgtcctgacggcgacgcagctcttctacgtcctcgcgatc 109900



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  103 bits (52), Expect = 1e-18
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                           
Query: 255     ccggcgcatttccacccaatattctttccgatcgggaacttcgccaccggctttttcgtg 314
               ||||||||||||||||| || ||||| |||||||| ||||  || || || || ||||| 
Sbjct: 8146531 ccggcgcatttccacccgatgttcttcccgatcggcaactgggcaacggggttcttcgtc 8146472

                                                                           
Query: 315     gtgttctcgctgctcgccggcgtcgtcgggttggcctcctgcatcgtgggattcagtcac 374
               |||||||||||||||||||||||||||||  | |||||| || |||| || ||||| |||
Sbjct: 8146471 gtgttctcgctgctcgccggcgtcgtcggcatcgcctccggcctcgtcgggttcagccac 8146412

                                                                           
Query: 375     gtccggttctggaactacagcagcctgcagtccgcggcgtcgctcggtctgctcgcctgg 434
                ||||   ||||||||||  |  ||||||| | |||||| |   ||| ||||| ||||||
Sbjct: 8146411 atccgccactggaactactactccctgcagccggcggcgaccaccggcctgcttgcctgg 8146352

                                       
Query: 435     gcgcttaccgtcttagccatgggg 458
               ||||| |||||| | |||||||||
Sbjct: 8146351 gcgctcaccgtccttgccatgggg 8146328



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                           
Query: 108     gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
               ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 8146961 gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 8146902

                                                                           
Query: 168     atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
               |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 8146901 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 8146842

                          
Query: 228     ttcatcatagg 238
               |||||| ||||
Sbjct: 8146841 ttcatcctagg 8146831



 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 507     accatggaggcgttcacgatagccctaacagtgacgcagctcttctacatcctcgtgatc 566
               |||||||||||||||||||| | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 8145838 accatggaggcgttcacgatcgtcctgacggcgacgcagctcttctacgtcctcgcgatc 8145779



to top

>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034C11
          Length = 139399

 Score =  103 bits (52), Expect = 1e-18
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                         
Query: 255   ccggcgcatttccacccaatattctttccgatcgggaacttcgccaccggctttttcgtg 314
             ||||||||||||||||| || ||||| |||||||| ||||  || || || || ||||| 
Sbjct: 64249 ccggcgcatttccacccgatgttcttcccgatcggcaactgggcaacggggttcttcgtc 64190

                                                                         
Query: 315   gtgttctcgctgctcgccggcgtcgtcgggttggcctcctgcatcgtgggattcagtcac 374
             |||||||||||||||||||||||||||||  | |||||| || |||| || ||||| |||
Sbjct: 64189 gtgttctcgctgctcgccggcgtcgtcggcatcgcctccggcctcgtcgggttcagccac 64130

                                                                         
Query: 375   gtccggttctggaactacagcagcctgcagtccgcggcgtcgctcggtctgctcgcctgg 434
              ||||   ||||||||||  |  ||||||| | |||||| |   ||| ||||| ||||||
Sbjct: 64129 atccgccactggaactactactccctgcagccggcggcgaccaccggcctgcttgcctgg 64070

                                     
Query: 435   gcgcttaccgtcttagccatgggg 458
             ||||| |||||| | |||||||||
Sbjct: 64069 gcgctcaccgtccttgccatgggg 64046



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                         
Query: 108   gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
             ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 64679 gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 64620

                                                                         
Query: 168   atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
             |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 64619 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 64560

                        
Query: 228   ttcatcatagg 238
             |||||| ||||
Sbjct: 64559 ttcatcctagg 64549



 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                         
Query: 507   accatggaggcgttcacgatagccctaacagtgacgcagctcttctacatcctcgtgatc 566
             |||||||||||||||||||| | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 63556 accatggaggcgttcacgatcgtcctgacggcgacgcagctcttctacgtcctcgcgatc 63497



to top

>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0004G10
          Length = 150379

 Score =  103 bits (52), Expect = 1e-18
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                          
Query: 255    ccggcgcatttccacccaatattctttccgatcgggaacttcgccaccggctttttcgtg 314
              ||||||||||||||||| || ||||| |||||||| ||||  || || || || ||||| 
Sbjct: 143182 ccggcgcatttccacccgatgttcttcccgatcggcaactgggcaacggggttcttcgtc 143123

                                                                          
Query: 315    gtgttctcgctgctcgccggcgtcgtcgggttggcctcctgcatcgtgggattcagtcac 374
              |||||||||||||||||||||||||||||  | |||||| || |||| || ||||| |||
Sbjct: 143122 gtgttctcgctgctcgccggcgtcgtcggcatcgcctccggcctcgtcgggttcagccac 143063

                                                                          
Query: 375    gtccggttctggaactacagcagcctgcagtccgcggcgtcgctcggtctgctcgcctgg 434
               ||||   ||||||||||  |  ||||||| | |||||| |   ||| ||||| ||||||
Sbjct: 143062 atccgccactggaactactactccctgcagccggcggcgaccaccggcctgcttgcctgg 143003

                                      
Query: 435    gcgcttaccgtcttagccatgggg 458
              ||||| |||||| | |||||||||
Sbjct: 143002 gcgctcaccgtccttgccatgggg 142979



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                          
Query: 108    gcagaaatggcggataacctgaagcccgtggccctcttcctgctgatgctcaacttctgc 167
              ||||| ||||| || | |||||||||||| ||| |  | |||||||| |||||| |||||
Sbjct: 143612 gcagagatggccgaaaccctgaagcccgtagccttgctgctgctgatactcaacctctgc 143553

                                                                          
Query: 168    atgtacctcattctcgccatcatcggcgggtgggcggtcaacttcgccatcgaccagggc 227
              |||||| |||| ||||||||||||||||| ||||| |||||| || ||||||| |  |||
Sbjct: 143552 atgtacgtcatcctcgccatcatcggcggctgggccgtcaacatctccatcgatcgcggc 143493

                         
Query: 228    ttcatcatagg 238
              |||||| ||||
Sbjct: 143492 ttcatcctagg 143482



 Score = 63.9 bits (32), Expect = 9e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 507    accatggaggcgttcacgatagccctaacagtgacgcagctcttctacatcctcgtgatc 566
              |||||||||||||||||||| | ||| || | |||||||||||||||| |||||| ||||
Sbjct: 142489 accatggaggcgttcacgatcgtcctgacggcgacgcagctcttctacgtcctcgcgatc 142430



to top

>gb|CP000384.1| Mycobacterium sp. MCS, complete genome
          Length = 5705448

 Score = 48.1 bits (24), Expect = 0.051
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 314    ggtgttctcgctgctcgccggcgtcgtc 341
              ||||||| ||||||||||||||||||||
Sbjct: 788004 ggtgttcccgctgctcgccggcgtcgtc 788031



to top

>ref|NM_001063877.1| Oryza sativa (japonica cultivar-group) Os06g0265400 (Os06g0265400)
           mRNA, complete cds
          Length = 1565

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 320 ctcgctgctcgccggcgtcgtcg 342
           |||||||||||||||||||||||
Sbjct: 393 ctcgctgctcgccggcgtcgtcg 371



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 320     ctcgctgctcgccggcgtcgtcg 342
               |||||||||||||||||||||||
Sbjct: 8798590 ctcgctgctcgccggcgtcgtcg 8798612



to top

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 328     tcgccggcgtcgtcgggttggcc 350
               |||||||||||||||||||||||
Sbjct: 1082337 tcgccggcgtcgtcgggttggcc 1082359



to top

>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1001_B06
          Length = 134810

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 320   ctcgctgctcgccggcgtcgtcg 342
             |||||||||||||||||||||||
Sbjct: 68911 ctcgctgctcgccggcgtcgtcg 68933



to top

>dbj|AK109719.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A04, full
           insert sequence
          Length = 1565

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 320 ctcgctgctcgccggcgtcgtcg 342
           |||||||||||||||||||||||
Sbjct: 393 ctcgctgctcgccggcgtcgtcg 371



to top

>emb|CT837543.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA006P02, full
           insert sequence
          Length = 842

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 322 cgctgctcgccggcgtcgtcgg 343
           ||||||||||||||||||||||
Sbjct: 306 cgctgctcgccggcgtcgtcgg 327



 Score = 42.1 bits (21), Expect = 3.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 450 gccatggggctggcttgccaggagatcag 478
           |||||||||||||| ||| ||||||||||
Sbjct: 434 gccatggggctggcgtgcaaggagatcag 462



to top

>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
              complete sequence
          Length = 146303

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 322    cgctgctcgccggcgtcgtcgg 343
              ||||||||||||||||||||||
Sbjct: 141230 cgctgctcgccggcgtcgtcgg 141251



to top

>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0035J16, complete sequence
          Length = 170233

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 322   cgctgctcgccggcgtcgtcgg 343
             ||||||||||||||||||||||
Sbjct: 40504 cgctgctcgccggcgtcgtcgg 40525



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.79
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 322      cgctgctcgccggcgtcgtcgg 343
                ||||||||||||||||||||||
Sbjct: 19337155 cgctgctcgccggcgtcgtcgg 19337176



to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 313     tggtgttctcgctgctcgccg 333
               |||||||||||||||||||||
Sbjct: 1436581 tggtgttctcgctgctcgccg 1436561



to top

>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 325     tgctcgccggcgtcgtcgggttggc 349
               |||||||||| ||||||||||||||
Sbjct: 2208618 tgctcgccggtgtcgtcgggttggc 2208594



to top

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 324    ctgctcgccggcgtcgtcgggttggcctc 352
              ||||||||||| |||||||| ||||||||
Sbjct: 780424 ctgctcgccggggtcgtcggattggcctc 780452



to top

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    cgctgctcgccggcgtcgtcg 342
              |||||||||||||||||||||
Sbjct: 353474 cgctgctcgccggcgtcgtcg 353494



to top

>gb|AC097347.6| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160325

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 696   ttttcacacatgtgaatgatg 716
             |||||||||||||||||||||
Sbjct: 11898 ttttcacacatgtgaatgatg 11918



to top

>gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complete sequence
          Length = 157757

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   aagcccgtggccctcttcctgctga 153
             ||||||||||| |||||||||||||
Sbjct: 75042 aagcccgtggctctcttcctgctga 75066



to top

>gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, complete sequence
          Length = 167842

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   aagcccgtggccctcttcctgctga 153
             ||||||||||| |||||||||||||
Sbjct: 21140 aagcccgtggctctcttcctgctga 21164


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 123,198,433
Number of extensions: 6542796
Number of successful extensions: 129507
Number of sequences better than 10.0: 23
Number of HSP's gapped: 129501
Number of HSP's successfully gapped: 32
Length of query: 832
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 810
Effective length of database: 18,508,616,841
Effective search space: 14991979641210
Effective search space used: 14991979641210
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top