ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf53b22 |
|---|---|
| Clone Library Name | barley_pub |
>Q99ND9:RWDD1_RAT RWD domain-containing protein 1 - Rattus norvegicus (Rat)| Length = 243 Score = 86.3 bits (212), Expect = 2e-16 Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 4/174 (2%) Frame = +1 Query: 265 IDTNSRCFEILLSPQDDDFDEAAHVPVQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLT 444 + N F I ++ + + DE VQ L F ++EKYPDE PL I S ++ +D++ Sbjct: 26 LSENPPSFTITVTSEAGENDET----VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVS 81 Query: 445 SLKEKLDQEATENLGMAMVYTLLDSAKEWLTEKYGQ----NAGXXXXXXXXXXXXXVIIP 612 + + L +A ENLGM M++TL+ + +E L E Q + Sbjct: 82 DILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLF 141 Query: 613 HGEAVTVESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 774 HG VT+E+F++W+ +F+AEL + K M E + KLSG+Q FE+ ++ Sbjct: 142 HGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193
>Q9CQK7:RWDD1_MOUSE RWD domain-containing protein 1 - Mus musculus (Mouse)| Length = 243 Score = 85.1 bits (209), Expect = 5e-16 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 4/167 (2%) Frame = +1 Query: 286 FEILLSPQDDDFDEAAHVPVQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLTSLKEKLD 465 F I ++ + + DE VQ L F ++EKYPDE PL I S ++ +D++ + + L Sbjct: 33 FTITVTSEAGENDET----VQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLA 88 Query: 466 QEATENLGMAMVYTLLDSAKEWLTEKYGQ----NAGXXXXXXXXXXXXXVIIPHGEAVTV 633 +A ENLGM M++TL+ + +E L E Q + HG VT+ Sbjct: 89 LQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTI 148 Query: 634 ESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 774 E+F++W+ +F+AEL + K M E + KLSG+Q FE+ ++ Sbjct: 149 ENFLSWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193
>Q9H446:RWDD1_HUMAN RWD domain-containing protein 1 - Homo sapiens (Human)| Length = 243 Score = 85.1 bits (209), Expect = 5e-16 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 4/174 (2%) Frame = +1 Query: 265 IDTNSRCFEILLSPQDDDFDEAAHVPVQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLT 444 + N F I ++ + + DE VQ L F ++EKYPDE PL I S ++ +D++ Sbjct: 26 LSENPPSFTITVTSEAGENDET----VQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVS 81 Query: 445 SLKEKLDQEATENLGMAMVYTLLDSAKEWLTEKYGQ----NAGXXXXXXXXXXXXXVIIP 612 + + L +A ENLGM M++TL+ + +E L E Q + Sbjct: 82 DILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLF 141 Query: 613 HGEAVTVESFMAWRERFEAELALQRAKLMPESALTAPKEKKLSGRQYFESGRHI 774 HG VT+E+F+ W+ +F+AEL + K M E + KLSG+Q FE+ ++ Sbjct: 142 HGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFETDHNL 193
>Q9QZR0:RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 - Mus musculus (Mouse)| Length = 456 Score = 47.0 bits (110), Expect = 2e-04 Identities = 23/66 (34%), Positives = 37/66 (56%) Frame = +1 Query: 343 VQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLTSLKEKLDQEATENLGMAMVYTLLDSA 522 V LV +YP E P ++I++ RG+ + + + + L A E LG AM+Y L++ Sbjct: 61 VCFTLVLRIPVQYPHEVPQISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKG 120 Query: 523 KEWLTE 540 KE LT+ Sbjct: 121 KEILTD 126
>Q03768:GIR2_YEAST Protein GIR2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 265 Score = 46.2 bits (108), Expect = 3e-04 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Frame = +1 Query: 373 EKYPDEPPLVNIKSVRGIKPDDLTSLKEKLDQEATENLGMAMVYTLLDSAKE----WLTE 540 +K+ + P L++ K G P+ L+ +++ + LGM M + L+ S KE W +E Sbjct: 108 KKFENLPDLISFK---GYLPELTVQLESQIETDML--LGMQMCFALISSIKERCEQWYSE 162 Query: 541 KYGQNAGXXXXXXXXXXXXXVIIPHGEAVTVESFMAWRERFEAELAL-QRAKLMPESALT 717 + + HG VT ES++ WR +F EL L +R ++ A Sbjct: 163 QLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEWRSKFRQELKLDERDQVRRMKA-- 220 Query: 718 APKEKKLSGRQYFESG 765 KL+G+Q FE G Sbjct: 221 --HHGKLTGKQMFEQG 234
>Q5E9N3:RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 - Bos taurus (Bovine)| Length = 458 Score = 45.4 bits (106), Expect = 5e-04 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +1 Query: 343 VQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLTSLKEKLDQEATENLGMAMVYTLLDSA 522 V LV +YP E P ++I++ RG+ + + + + L A LG AM+Y L++ Sbjct: 62 VCFTLVLQVPTQYPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKG 121 Query: 523 KEWLTE 540 KE LT+ Sbjct: 122 KEILTD 127
>Q96BH1:RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 - Homo sapiens (Human)| Length = 459 Score = 44.3 bits (103), Expect = 0.001 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = +1 Query: 343 VQMALVFAHTEKYPDEPPLVNIKSVRGIKPDDLTSLKEKLDQEATENLGMAMVYTLLDSA 522 V LV +YP E P ++I++ RG+ + + ++ + L A LG AM+Y L++ Sbjct: 62 VCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKG 121 Query: 523 KEWLTE 540 KE LT+ Sbjct: 122 KEILTD 127
>Q569B7:RWDD4_RAT RWD domain-containing protein 4 - Rattus norvegicus (Rat)| Length = 188 Score = 37.4 bits (85), Expect = 0.12 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +1 Query: 340 PVQMALVFAHTEKYPDEPPLVNIKSV--RGIKPDDLTSLKEKLDQEATENLGMAMVYTLL 513 P + + TE YP PP++++ + I S+ KL + NLG AM YTL Sbjct: 42 PKAFLIEISWTETYPQTPPVISMNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLF 101 Query: 514 DSAKE 528 + AK+ Sbjct: 102 EYAKD 106
>Q6NW29:RWDD4_HUMAN RWD domain-containing protein 4A - Homo sapiens (Human)| Length = 188 Score = 37.4 bits (85), Expect = 0.12 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +1 Query: 340 PVQMALVFAHTEKYPDEPPLVNIKSV--RGIKPDDLTSLKEKLDQEATENLGMAMVYTLL 513 P + + TE YP PP++++ + I S+ KL + NLG AM YTL Sbjct: 42 PKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLF 101 Query: 514 DSAKE 528 + AK+ Sbjct: 102 EYAKD 106
>Q9CPR1:RWDD4_MOUSE RWD domain-containing protein 4A - Mus musculus (Mouse)| Length = 188 Score = 33.9 bits (76), Expect = 1.4 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +1 Query: 340 PVQMALVFAHTEKYPDEPPLVNIKSV--RGIKPDDLTSLKEKLDQEATENLGMAMVYTLL 513 P + + TE YP P++++ + I S+ KL + NLG AM YTL Sbjct: 42 PKAFLIEVSWTETYPQTAPVISMNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLF 101 Query: 514 DSAKE 528 + AK+ Sbjct: 102 EYAKD 106
>Q9HGN1:GCN2_SCHPO Serine/threonine-protein kinase gcn2 - Schizosaccharomyces pombe| (Fission yeast) Length = 1576 Score = 32.7 bits (73), Expect = 3.0 Identities = 22/104 (21%), Positives = 47/104 (45%) Frame = +1 Query: 229 DDIKEIDPSESGIDTNSRCFEILLSPQDDDFDEAAHVPVQMALVFAHTEKYPDEPPLVNI 408 DD +E+ + TN + I L + + A + + + L YP P++ + Sbjct: 27 DDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIEL----GRSYPYVKPVIKL 82 Query: 409 KSVRGIKPDDLTSLKEKLDQEATENLGMAMVYTLLDSAKEWLTE 540 ++ + + L +KLD +A + LG M++ L +++L + Sbjct: 83 QNGENVLNSQIRFLLDKLDTKAKDLLGEEMIFELASIVQDYLND 126 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 179,832,065 Number of extensions: 3533178 Number of successful extensions: 8637 Number of sequences better than 10.0: 11 Number of HSP's gapped: 8630 Number of HSP's successfully gapped: 11 Length of query: 396 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 281 Effective length of database: 69,142,514 Effective search space: 19429046434 Effective search space used: 19429046434 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
