ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf50k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1A4RMV8:ROK1_MAGGR ATP-dependent RNA helicase ROK1 - Magnaporthe ... 36 0.33
2P31902:HYPB_RALEH Hydrogenase nickel incorporation protein hypB ... 33 2.2

>A4RMV8:ROK1_MAGGR ATP-dependent RNA helicase ROK1 - Magnaporthe grisea (Rice blast|
            fungus) (Pyricularia grisea)
          Length = 775
 Score = 36.2 bits (82), Expect = 0.33
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -1

Query: 1130 GSSTNQILI*TTRKAVTDRSKLQPIFIDSCFLFFNQSR---SILPKRTAIEPQKEEEETT 960
            GS T    +   +K   +  K +PI +D C       R   ++LP + A  P K E+ + 
Sbjct: 95   GSKTKAADVKKAKKDADEADKARPIELDECKRILRSHRLKYTLLPVQKAA-PAKVEKSSA 153

Query: 959  SGKRKKEKTDEIQEAIQ 909
              K+KK+K D++  A Q
Sbjct: 154  KKKKKKDKGDKVDGAAQ 170



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>P31902:HYPB_RALEH Hydrogenase nickel incorporation protein hypB - Ralstonia eutropha|
           (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
           (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337))
          Length = 361

 Score = 33.5 bits (75), Expect = 2.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -2

Query: 718 GRAVDPEVVVAGDPRAHLPPHPAVDAHVHQHVPGRLVLRERDGELRREHDAVHGSEVGRP 539
           G+    + ++  +    LP H A  AH H+H       R+ DG+    HD  H       
Sbjct: 159 GKGCHLDALMVANAYERLPLHAAAHAHTHEH-------RQEDGQHSHHHDHEHARHDHHD 211

Query: 538 HR 533
           HR
Sbjct: 212 HR 213


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 170,860,525
Number of extensions: 3072896
Number of successful extensions: 9126
Number of sequences better than 10.0: 2
Number of HSP's gapped: 9079
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 345
Effective length of database: 68,593,924
Effective search space: 23664903780
Effective search space used: 23664903780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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