ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf50k10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001069477.1| Oryza sativa (japonica cultivar-group) Os09g0346900 (Os09g0346900) mRNA, complete cds Length = 1283 Score = 232 bits (117), Expect = 2e-57 Identities = 345/421 (81%) Strand = Plus / Plus Query: 383 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 442 |||| ||||||||||||| ||| | | ||||||| |||||||| |||||||| |||||| Sbjct: 422 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 481 Query: 443 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 502 | ||||||| ||| |||||||||| ||| ||||| || | ||| |||||| ||| ||| Sbjct: 482 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 541 Query: 503 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 562 ||||| ||||| || ||| |||||||||| ||||| || |||| ||||||||||| Sbjct: 542 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 601 Query: 563 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 622 | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| | Sbjct: 602 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 661 Query: 623 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 682 |||||||| | ||| ||||||| |||||||| |||||||||||||||||||||| Sbjct: 662 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 721 Query: 683 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 742 ||||| |||||||||||||||| || |||| ||||| ||||||||||||||||||||| Sbjct: 722 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacatgatataaggg 781 Query: 743 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 802 | |||||||| ||||| || ||||| || |||||| || |||||||| |||||||| Sbjct: 782 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 841 Query: 803 t 803 | Sbjct: 842 t 842 Score = 121 bits (61), Expect = 6e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 86 gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 145 |||||||||| |||| || |||||||| ||||| ||| |||||| |||| ||||||| Sbjct: 47 gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 106 Query: 146 ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 205 ||||||||||||||||||||||| || | ||||| | ||||||||| ||| | ||||| Sbjct: 107 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 166 Query: 206 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 265 ||| |||||| | ||||||||||||| ||||| ||| ||||| ||||||| ||| |||| Sbjct: 167 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 226 Query: 266 aggct 270 ||||| Sbjct: 227 aggct 231
>dbj|AK069895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039B22, full insert sequence Length = 1285 Score = 232 bits (117), Expect = 2e-57 Identities = 345/421 (81%) Strand = Plus / Plus Query: 383 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 442 |||| ||||||||||||| ||| | | ||||||| |||||||| |||||||| |||||| Sbjct: 424 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 483 Query: 443 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 502 | ||||||| ||| |||||||||| ||| ||||| || | ||| |||||| ||| ||| Sbjct: 484 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 543 Query: 503 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 562 ||||| ||||| || ||| |||||||||| ||||| || |||| ||||||||||| Sbjct: 544 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 603 Query: 563 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 622 | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| | Sbjct: 604 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 663 Query: 623 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 682 |||||||| | ||| ||||||| |||||||| |||||||||||||||||||||| Sbjct: 664 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 723 Query: 683 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 742 ||||| |||||||||||||||| || |||| ||||| ||||||||||||||||||||| Sbjct: 724 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacatgatataaggg 783 Query: 743 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 802 | |||||||| ||||| || ||||| || |||||| || |||||||| |||||||| Sbjct: 784 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 843 Query: 803 t 803 | Sbjct: 844 t 844 Score = 121 bits (61), Expect = 6e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 86 gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 145 |||||||||| |||| || |||||||| ||||| ||| |||||| |||| ||||||| Sbjct: 49 gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 108 Query: 146 ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 205 ||||||||||||||||||||||| || | ||||| | ||||||||| ||| | ||||| Sbjct: 109 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 168 Query: 206 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 265 ||| |||||| | ||||||||||||| ||||| ||| ||||| ||||||| ||| |||| Sbjct: 169 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 228 Query: 266 aggct 270 ||||| Sbjct: 229 aggct 233
>emb|CT832609.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108G01, full insert sequence Length = 1069 Score = 224 bits (113), Expect = 5e-55 Identities = 344/421 (81%) Strand = Plus / Plus Query: 383 tttctccggatttacctaaagagactacagataaggttcctgaatttgaagacttgcagt 442 |||| ||||||||||||| ||| | | ||||||| |||||||| |||||||| |||||| Sbjct: 429 tttcgccggatttacctatagacaacatagataagcttcctgaaattgaagacatgcagt 488 Query: 443 ttgaggctaagtcatcaaaggattctgcatggtacgacgttgcccttttcttggcacaca 502 | ||||||| ||| |||||||||| ||| ||||| || | ||| |||||| ||| ||| Sbjct: 489 tcgaggctaggtcttcaaaggattttgcttggtatgatatcgccactttcttagcataca 548 Query: 503 ggaagacaagtttgggagaagttgaagtccgggtgaggttcgtcggatatggggctgaag 562 ||||| ||||| || ||| |||||||||| ||||| || |||| ||||||||||| Sbjct: 549 ggaagttaagttctggtgaatttgaagtccgagtgagatttcaaggatttggggctgaag 608 Query: 563 aagatgagtgggtgaatgtcaggaaggctgtccgccagcaatccattccattggaatcct 622 | ||||| ||| | |||||| |||||||| |||||| ||||||||| || |||||||| | Sbjct: 609 aggatgaatggatcaatgtccggaaggctatccgcctgcaatccatcccgttggaatcat 668 Query: 623 cagaatgccgaagcattgtcaaaggagatcttgtcctgtgtttcaaggagagcaatgatg 682 |||||||| | ||| ||||||| |||||||| |||||||||||||||||||||| Sbjct: 669 cagaatgcaaactcatcagggaaggagaccttgtcctctgtttcaaggagagcaatgatg 728 Query: 683 aagcactgcatttcgatgcgcacattgtggatgtccagtggaaacaacatgatataaggg 742 ||||| |||||||||||||||| || |||| ||||| |||||||||| |||||||||| Sbjct: 729 aagcattgcatttcgatgcgcatgttctggaaatccagcggaaacaacacgatataaggg 788 Query: 743 gatgcagatgcctcttcaccgttgaatatgatcatgatcaaagccaggagatggtgaacc 802 | |||||||| ||||| || ||||| || |||||| || |||||||| |||||||| Sbjct: 789 ggtgcagatgtgtcttccttgtcgaatacgaccatgatggaacccaggagagggtgaacc 848 Query: 803 t 803 | Sbjct: 849 t 849 Score = 121 bits (61), Expect = 6e-24 Identities = 154/185 (83%) Strand = Plus / Plus Query: 86 gacctcgccgccggccagcgatggagcgacgatccagcacccgcttctcgccctccgaga 145 |||||||||| |||| || |||||||| ||||| ||| |||||| |||| ||||||| Sbjct: 54 gacctcgccggcggcgagaaatggagcggcgatcgagcgttcgcttcgcgccatccgaga 113 Query: 146 ttgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtttct 205 ||||||||||||||||||||||| || | ||||| | ||||||||| ||| | ||||| Sbjct: 114 ttgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattttct 173 Query: 206 gccagaagcttgtagaagaatttaatcgttctgcagctcgagtcggaagtagagctctac 265 ||| |||||| | ||||||||||||| ||||| ||| ||||| ||||||| ||| |||| Sbjct: 174 gccggaagctcgcagaagaatttaattgttctccaggccgagttggaagtaaagcactac 233 Query: 266 aggct 270 ||||| Sbjct: 234 aggct 238
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 105 bits (53), Expect = 3e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 668 aggagagcaatgatgaagcactgcatttcgatgcgcacattgtggatgtccagtggaaac 727 |||||||||||||||||||| |||||||||||||||| || |||| ||||| |||||| Sbjct: 10820434 aggagagcaatgatgaagcattgcatttcgatgcgcatgttctggaaatccagcggaaac 10820375 Query: 728 aacatgatataaggggatgcagatg 752 |||||||||||||||| |||||||| Sbjct: 10820374 aacatgatataagggggtgcagatg 10820350 Score = 79.8 bits (40), Expect = 2e-11 Identities = 73/84 (86%) Strand = Plus / Minus Query: 547 ggatatggggctgaagaagatgagtgggtgaatgtcaggaaggctgtccgccagcaatcc 606 |||| |||||||||||| ||||| ||| | |||||| |||||||| |||||| ||||||| Sbjct: 10820730 ggatttggggctgaagaggatgaatggatcaatgtccggaaggctatccgcctgcaatcc 10820671 Query: 607 attccattggaatcctcagaatgc 630 || || |||||||| ||||||||| Sbjct: 10820670 atcccgttggaatcatcagaatgc 10820647 Score = 71.9 bits (36), Expect = 5e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 143 agattgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtt 202 |||||||||||||||||||||||||| || | ||||| | ||||||||| ||| | || Sbjct: 10823643 agattgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattt 10823584 Query: 203 tctgccagaagcttgtagaagaatttaa 230 |||||| |||||| | |||||||||||| Sbjct: 10823583 tctgccggaagctcgcagaagaatttaa 10823556 Score = 48.1 bits (24), Expect = 0.069 Identities = 87/108 (80%) Strand = Plus / Plus Query: 526 gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 585 |||||||| |||||||| |||| |||||||||||| ||||| ||| | |||||| || Sbjct: 10780350 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 10780409 Query: 586 aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 633 |||||| |||| | | ||||||| || | ||||| | |||||||||| Sbjct: 10780410 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 10780457 Score = 48.1 bits (24), Expect = 0.069 Identities = 27/28 (96%) Strand = Plus / Plus Query: 668 aggagagcaatgatgaagcactgcattt 695 |||||||||||||||||||| ||||||| Sbjct: 10780670 aggagagcaatgatgaagcattgcattt 10780697
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 105 bits (53), Expect = 3e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 668 aggagagcaatgatgaagcactgcatttcgatgcgcacattgtggatgtccagtggaaac 727 |||||||||||||||||||| |||||||||||||||| || |||| ||||| |||||| Sbjct: 44157 aggagagcaatgatgaagcattgcatttcgatgcgcatgttctggaaatccagcggaaac 44098 Query: 728 aacatgatataaggggatgcagatg 752 |||||||||||||||| |||||||| Sbjct: 44097 aacatgatataagggggtgcagatg 44073 Score = 79.8 bits (40), Expect = 2e-11 Identities = 73/84 (86%) Strand = Plus / Minus Query: 547 ggatatggggctgaagaagatgagtgggtgaatgtcaggaaggctgtccgccagcaatcc 606 |||| |||||||||||| ||||| ||| | |||||| |||||||| |||||| ||||||| Sbjct: 44453 ggatttggggctgaagaggatgaatggatcaatgtccggaaggctatccgcctgcaatcc 44394 Query: 607 attccattggaatcctcagaatgc 630 || || |||||||| ||||||||| Sbjct: 44393 atcccgttggaatcatcagaatgc 44370 Score = 71.9 bits (36), Expect = 5e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 143 agattgcaaggatggagaagttggtttcagacaaaaaaggggaagtcttggttgatagtt 202 |||||||||||||||||||||||||| || | ||||| | ||||||||| ||| | || Sbjct: 47366 agattgcaaggatggagaagttggttacacataaaaaggaacaagtcttggatgaaattt 47307 Query: 203 tctgccagaagcttgtagaagaatttaa 230 |||||| |||||| | |||||||||||| Sbjct: 47306 tctgccggaagctcgcagaagaatttaa 47279 Score = 48.1 bits (24), Expect = 0.069 Identities = 87/108 (80%) Strand = Plus / Plus Query: 526 gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 585 |||||||| |||||||| |||| |||||||||||| ||||| ||| | |||||| || Sbjct: 4073 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 4132 Query: 586 aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 633 |||||| |||| | | ||||||| || | ||||| | |||||||||| Sbjct: 4133 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 4180 Score = 48.1 bits (24), Expect = 0.069 Identities = 27/28 (96%) Strand = Plus / Plus Query: 668 aggagagcaatgatgaagcactgcattt 695 |||||||||||||||||||| ||||||| Sbjct: 4393 aggagagcaatgatgaagcattgcattt 4420
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 48.1 bits (24), Expect = 0.069 Identities = 87/108 (80%) Strand = Plus / Plus Query: 526 gaagtccgggtgaggttcgtcggatatggggctgaagaagatgagtgggtgaatgtcagg 585 |||||||| |||||||| |||| |||||||||||| ||||| ||| | |||||| || Sbjct: 116968 gaagtccgagtgaggtttcaaggatttggggctgaagaggatgaatggatcaatgtccgg 117027 Query: 586 aaggctgtccgccagcaatccattccattggaatcctcagaatgccga 633 |||||| |||| | | ||||||| || | ||||| | |||||||||| Sbjct: 117028 aaggctatccgactgtaatccatcccgctagaatcatgagaatgccga 117075 Score = 48.1 bits (24), Expect = 0.069 Identities = 27/28 (96%) Strand = Plus / Plus Query: 668 aggagagcaatgatgaagcactgcattt 695 |||||||||||||||||||| ||||||| Sbjct: 117288 aggagagcaatgatgaagcattgcattt 117315
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 698 atgcgcacattgtggatgtccag 720 ||||||||||||||||||||||| Sbjct: 303305 atgcgcacattgtggatgtccag 303327
>gb|DQ366737.1| Uncultured Prochlorococcus marinus clone HOT0M-5C8 genomic sequence Length = 20051 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 ctttctccggatttacctaaag 403 |||||||||||||||||||||| Sbjct: 9071 ctttctccggatttacctaaag 9092
>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5 Length = 262202 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 ctttctccggatttacctaaag 403 |||||||||||||||||||||| Sbjct: 59326 ctttctccggatttacctaaag 59305
>gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome Length = 2708355 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 595 cgccagcaatccattccattg 615 ||||||||||||||||||||| Sbjct: 2258477 cgccagcaatccattccattg 2258457
>gb|AC113309.7| Mus musculus chromosome 6, clone RP23-440D19, complete sequence Length = 229553 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 caggctacacagcctttagcc 285 ||||||||||||||||||||| Sbjct: 70569 caggctacacagcctttagcc 70589
>gb|AE005820.1| Caulobacter crescentus CB15 section 146 of 359 of the complete genome Length = 14021 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 acctcgccgccggccagcgat 107 ||||||||||||||||||||| Sbjct: 9970 acctcgccgccggccagcgat 9990
>dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34M22, TM0282, complete sequence Length = 107979 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 557 ctgaagaagatgagtgggtgaatgt 581 ||||||||||||||||||| ||||| Sbjct: 79169 ctgaagaagatgagtgggttaatgt 79193
>emb|AL627075.13| Mouse DNA sequence from clone RP23-166L2 on chromosome 4, complete sequence Length = 194998 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 tcagacaaaaaaggggaagtcttgg 193 |||||||||||||||||||| |||| Sbjct: 70957 tcagacaaaaaaggggaagtattgg 70981 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 188,755,298 Number of extensions: 9637388 Number of successful extensions: 208026 Number of sequences better than 10.0: 14 Number of HSP's gapped: 208018 Number of HSP's successfully gapped: 29 Length of query: 1124 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1101 Effective length of database: 18,503,978,556 Effective search space: 20372880390156 Effective search space used: 20372880390156 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
