| Clone Name | FLbaf59c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001051853.1| Oryza sativa (japonica cultivar-group) Os01g0935300 (Os01g0935300) mRNA, complete cds Length = 1496 Score = 525 bits (265), Expect = e-145 Identities = 773/937 (82%), Gaps = 4/937 (0%) Strand = Plus / Plus Query: 242 gttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctgg 301 ||||| || ||||||||||||||||||||||| | ||||||| ||||||||||||||||| Sbjct: 116 gttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctgg 175 Query: 302 aaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtaca 361 ||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| | Sbjct: 176 aagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgga 235 Query: 362 aggcctactgttgctgagtacatgaattgctatgactgtgcttatagaatggctgtgcag 421 ||||| ||||| |||||||||||||| |||||| || ||||| | |||||||||||| Sbjct: 236 aggccaactgtgaatgagtacatgaattactatgattgcgcttaccggatggctgtgcag 295 Query: 422 aca-accagctattgtgaagagatgtacaatggttacagggctacacttgcagaatctgt 480 | | ||||| |||||| |||||||||||||| ||||| || |||| || | | || Sbjct: 296 aaagaccag-tattgtcaagagatgtacaattcttacaaagcaacacatgaaagttgcgt 354 Query: 481 tcgtgcactggttttaccccatctgatgcacaagagagatgactaccttttgagacagct 540 ||||| |||||||||||||||||||||| ||| || ||||| ||| |||| |||| Sbjct: 355 ctgtgcaatggttttaccccatctgatgcataagcaaggtgacttattttggagagagct 414 Query: 541 tgagaaaatgtggtcgaactattgtatcatggttaaatgtatatctggcttcttcaacta 600 || |||||||||||| ||||||||| |||| ||| || | | ||||||| || ||| Sbjct: 415 tgtgaaaatgtggtcaaactattgtgccatgattagattcacaactggctttttggccta 474 Query: 601 tttggaccgttgctttgttgagca-aagaaagctaccttgtcttgaagacactgctgcca 659 ||||||||| ||||||||| || |||||| ||||||| ||||||||| ||||||| | Sbjct: 475 tttggaccgctgctttgttacacataagaaa-ctaccttcgcttgaagacgctgctgcta 533 Query: 660 cttcttttttctcgacagtcttttccttctttagccatgaagtatcagaggctctactta 719 ||||||| || || |||||||||||| ||| | ||||| ||||||| | |||||| | Sbjct: 534 cttctttcttttctccagtcttttcctacttcaataatgaaatatcagatgttctactga 593 Query: 720 ctttgattcgccaagagcgtgatggaagcaatgttgatatggacatcttgatggtcatta 779 || ||||||||||||||||||||||| |||||||||||||||| | ||||||| |||| Sbjct: 594 ctctgattcgccaagagcgtgatggatgcaatgttgatatggatcttttgatgggtatta 653 Query: 780 tgcgtggcatatgtcgctctgaagtcaaatccttcatgagaaatgctgttgtccaagata 839 |||||||||||||||| |||||||||||| || ||| || ||||||| | ||||||| Sbjct: 654 tgcgtggcatatgtcgttctgaagtcaaaaccaagctgaaaagtgctgttattcaagata 713 Query: 840 catatgcttactactccaggaaaagttctgaatggatagttcagtaccctctacaagatt 899 |||| ||||||||||||||||||| ||||||||| || || |||||| | ||||||| Sbjct: 714 catacttgtactactccaggaaaagttatgaatggattgtgcaataccctttgcaagatt 773 Query: 900 accttgccatggtccaggattgtatggagaaggaaaccatgagattgattagctatctgc 959 ||||||| | ||||||||| | || ||||||||| | |||| ||||| ||||||| Sbjct: 774 accttgctaaggtccaggaaactgtgcagaaggaaatgaagagactgattcactatctgt 833 Query: 960 atattcctgagggagatagcacagaactctgtttgaaggttgttagtgctccattgatgc 1019 |||| |||||| ||| | ||| ||||||||||||| |||||||||||||||||||| Sbjct: 834 gtatttctgaggaagagggttcaggcctctgtttgaaggctgttagtgctccattgatgc 893 Query: 1020 aaatgtatgacagctatgcaagagagaaacagattggtggccaacttttgcttcaaacat 1079 || ||||| | |||| | | ||||||||| |||||||| ||| ||||||||||||||| Sbjct: 894 aagcttatgaaaactatacgaaagagaaacatattggtggtcaagttttgcttcaaacat 953 Query: 1080 acaagactgtggaggatgatctgctggccagatgcaatcgcttgacaattgacagcggcg 1139 |||||||||| ||||||||||| |||| |||||||| ||||||||||||||||| ||| Sbjct: 954 acaagactgtagaggatgatcttctggacagatgcagtcgcttgacaattgacaatggct 1013 Query: 1140 tggacaacagttctggcagttacatggagtagaaagg 1176 ||||||||| |||| |||| ||||||||||| |||| Sbjct: 1014 tggacaacaattctttcagtcacatggagtagtaagg 1050
>dbj|AK064133.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G01, full insert sequence Length = 1496 Score = 517 bits (261), Expect = e-143 Identities = 772/937 (82%), Gaps = 4/937 (0%) Strand = Plus / Plus Query: 242 gttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctgg 301 ||||| || ||||||||||||||||||||||| | ||||||| ||||||||||||||||| Sbjct: 116 gttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctgg 175 Query: 302 aaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtaca 361 ||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| | Sbjct: 176 aagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgga 235 Query: 362 aggcctactgttgctgagtacatgaattgctatgactgtgcttatagaatggctgtgcag 421 ||||| ||||| |||||||||||||| |||||| || ||||| | |||||||||||| Sbjct: 236 aggccaactgtgaatgagtacatgaattactatgattgcgcttaccggatggctgtgcag 295 Query: 422 aca-accagctattgtgaagagatgtacaatggttacagggctacacttgcagaatctgt 480 | | ||||| |||||| |||||||||||||| ||||| || |||| || | | || Sbjct: 296 aaagaccag-tattgtcaagagatgtacaattcttacaaagcaacacatgaaagttgcgt 354 Query: 481 tcgtgcactggttttaccccatctgatgcacaagagagatgactaccttttgagacagct 540 ||||| |||||||||||||||||||||| ||| || ||||| ||| |||| |||| Sbjct: 355 ctgtgcaatggttttaccccatctgatgcataagcaaggtgacttattttggagagagct 414 Query: 541 tgagaaaatgtggtcgaactattgtatcatggttaaatgtatatctggcttcttcaacta 600 || |||||||||||| ||||||||| |||| ||| || | | ||||||| || ||| Sbjct: 415 tgtgaaaatgtggtcaaactattgtgccatgattagattcacaactggctttttggccta 474 Query: 601 tttggaccgttgctttgttgagca-aagaaagctaccttgtcttgaagacactgctgcca 659 ||||||||| ||||||||| || |||||| ||||||| ||||||||| ||||||| | Sbjct: 475 tttggaccgctgctttgttacacataagaaa-ctaccttcgcttgaagacgctgctgcta 533 Query: 660 cttcttttttctcgacagtcttttccttctttagccatgaagtatcagaggctctactta 719 ||||||| || || |||||||||||| ||| | ||||| ||||||| | |||||| | Sbjct: 534 cttctttcttttctccagtcttttcctacttcaataatgaaatatcagatgttctactga 593 Query: 720 ctttgattcgccaagagcgtgatggaagcaatgttgatatggacatcttgatggtcatta 779 || ||||||||||||||||||||||| |||||||||||||||| | ||||||| |||| Sbjct: 594 ctctgattcgccaagagcgtgatggatgcaatgttgatatggatcttttgatgggtatta 653 Query: 780 tgcgtggcatatgtcgctctgaagtcaaatccttcatgagaaatgctgttgtccaagata 839 |||||||||||||||| |||||||||||| || ||| || ||||||| | ||||||| Sbjct: 654 tgcgtggcatatgtcgttctgaagtcaaaaccaagctgaaaagtgctgttattcaagata 713 Query: 840 catatgcttactactccaggaaaagttctgaatggatagttcagtaccctctacaagatt 899 |||| ||||||||||||||||||| ||||||||| || || |||||| | ||||||| Sbjct: 714 catacttgtactactccaggaaaagttatgaatggattgtgcaataccctttgcaagatt 773 Query: 900 accttgccatggtccaggattgtatggagaaggaaaccatgagattgattagctatctgc 959 ||||||| | ||||||||| | || ||||||||| | |||| ||||| ||||||| Sbjct: 774 accttgctaaggtccaggaaactgtgcagaaggaaatgaagagactgattcactatctgt 833 Query: 960 atattcctgagggagatagcacagaactctgtttgaaggttgttagtgctccattgatgc 1019 |||| |||||| ||| | ||| ||||||||||||| |||||||||||||||||||| Sbjct: 834 gtatttctgaggaagagggttcaggcctctgtttgaaggctgttagtgctccattgatgc 893 Query: 1020 aaatgtatgacagctatgcaagagagaaacagattggtggccaacttttgcttcaaacat 1079 || ||||| | |||| | | | ||||||| |||||||| ||| ||||||||||||||| Sbjct: 894 aagcttatgaaaactatacgaaaaagaaacatattggtggtcaagttttgcttcaaacat 953 Query: 1080 acaagactgtggaggatgatctgctggccagatgcaatcgcttgacaattgacagcggcg 1139 |||||||||| ||||||||||| |||| |||||||| ||||||||||||||||| ||| Sbjct: 954 acaagactgtagaggatgatcttctggacagatgcagtcgcttgacaattgacaatggct 1013 Query: 1140 tggacaacagttctggcagttacatggagtagaaagg 1176 ||||||||| |||| |||| ||||||||||| |||| Sbjct: 1014 tggacaacaattctttcagtcacatggagtagtaagg 1050
>dbj|AK062782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B04, full insert sequence Length = 515 Score = 172 bits (87), Expect = 3e-39 Identities = 182/211 (86%), Gaps = 2/211 (0%) Strand = Plus / Plus Query: 242 gttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctgg 301 ||||| || ||||||||||||||||||||||| | ||||||| ||||||||||||||||| Sbjct: 123 gttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctgg 182 Query: 302 aaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtaca 361 ||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| | Sbjct: 183 aagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgga 242 Query: 362 aggcctactgttgctgagtacatgaattgctatgactgtgcttatagaatggctgtgcag 421 ||||| ||||| |||||||||||||| |||||| || ||||| | |||||||||||| Sbjct: 243 aggccaactgtgaatgagtacatgaattactatgattgcgcttaccggatggctgtgcag 302 Query: 422 aca-accagctattgtgaagagatgtacaat 451 | | ||||| |||||| |||||||||||||| Sbjct: 303 aaagaccag-tattgtcaagagatgtacaat 332
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 157 bits (79), Expect = 2e-34 Identities = 157/183 (85%) Strand = Plus / Plus Query: 724 gattcgccaagagcgtgatggaagcaatgttgatatggacatcttgatggtcattatgcg 783 |||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct: 41047157 gattcgccaagagcgtgatggatgcaatgttgatatggatcttttgatgggtattatgcg 41047216 Query: 784 tggcatatgtcgctctgaagtcaaatccttcatgagaaatgctgttgtccaagatacata 843 |||||||||||| |||||||||||| || ||| || ||||||| | ||||||||||| Sbjct: 41047217 tggcatatgtcgttctgaagtcaaaaccaagctgaaaagtgctgttattcaagatacata 41047276 Query: 844 tgcttactactccaggaaaagttctgaatggatagttcagtaccctctacaagattacct 903 ||||||||||||||||||| ||||||||| || || |||||| | ||||||||||| Sbjct: 41047277 cttgtactactccaggaaaagttatgaatggattgtgcaataccctttgcaagattacct 41047336 Query: 904 tgc 906 ||| Sbjct: 41047337 tgc 41047339 Score = 151 bits (76), Expect = 9e-33 Identities = 136/156 (87%) Strand = Plus / Plus Query: 241 agttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctg 300 |||||| || ||||||||||||||||||||||| | ||||||| |||||||||||||||| Sbjct: 41045813 agttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctg 41045872 Query: 301 gaaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtac 360 |||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| Sbjct: 41045873 gaagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgg 41045932 Query: 361 aaggcctactgttgctgagtacatgaattgctatga 396 |||||| ||||| |||||||||||||| |||||| Sbjct: 41045933 aaggccaactgtgaatgagtacatgaattactatga 41045968 Score = 91.7 bits (46), Expect = 7e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 1083 agactgtggaggatgatctgctggccagatgcaatcgcttgacaattgacagcggcgtgg 1142 ||||||| ||||||||||| |||| |||||||| ||||||||||||||||| ||| ||| Sbjct: 41048229 agactgtagaggatgatcttctggacagatgcagtcgcttgacaattgacaatggcttgg 41048288 Query: 1143 acaacagttctggcagttacatggagtagaaagg 1176 |||||| |||| |||| ||||||||||| |||| Sbjct: 41048289 acaacaattctttcagtcacatggagtagtaagg 41048322 Score = 81.8 bits (41), Expect = 7e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 1000 tgttagtgctccattgatgcaaatgtatgacagctatgcaagagagaaacagattggtgg 1059 |||||||||||||||||||||| ||||| | |||| | | ||||||||| |||||||| Sbjct: 41048061 tgttagtgctccattgatgcaagcttatgaaaactatacgaaagagaaacatattggtgg 41048120 Query: 1060 ccaacttttgcttcaaacatacaag 1084 ||| |||||||||||||||||||| Sbjct: 41048121 tcaagttttgcttcaaacatacaag 41048145 Score = 75.8 bits (38), Expect = 4e-10 Identities = 145/178 (81%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 490 ggttttaccccatctgatgcacaagagagatgactaccttttgagacagcttgagaaaat 549 ||||||||||||||||||||| ||| || ||||| ||| |||| |||||| |||||| Sbjct: 41046739 ggttttaccccatctgatgcataagcaaggtgacttattttggagagagcttgtgaaaat 41046798 Query: 550 gtggtcgaactattgtatcatggttaaatgtatatctggcttcttcaactatttggaccg 609 |||||| ||||||||| |||| ||| || | | ||||||| || |||||||||||| Sbjct: 41046799 gtggtcaaactattgtgccatgattagattcacaactggctttttggcctatttggaccg 41046858 Query: 610 ttgctttgttgagca-aagaaagctaccttgtcttgaagacactgctgccacttcttt 666 ||||||||| || |||||| ||||||| ||||||||| ||||||| |||||||| Sbjct: 41046859 ctgctttgttacacataagaaa-ctaccttcgcttgaagacgctgctgctacttcttt 41046915 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 gagacggcggcggcggcgagc 91 ||||||||||||||||||||| Sbjct: 36383496 gagacggcggcggcggcgagc 36383516
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 157 bits (79), Expect = 2e-34 Identities = 157/183 (85%) Strand = Plus / Plus Query: 724 gattcgccaagagcgtgatggaagcaatgttgatatggacatcttgatggtcattatgcg 783 |||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct: 84087 gattcgccaagagcgtgatggatgcaatgttgatatggatcttttgatgggtattatgcg 84146 Query: 784 tggcatatgtcgctctgaagtcaaatccttcatgagaaatgctgttgtccaagatacata 843 |||||||||||| |||||||||||| || ||| || ||||||| | ||||||||||| Sbjct: 84147 tggcatatgtcgttctgaagtcaaaaccaagctgaaaagtgctgttattcaagatacata 84206 Query: 844 tgcttactactccaggaaaagttctgaatggatagttcagtaccctctacaagattacct 903 ||||||||||||||||||| ||||||||| || || |||||| | ||||||||||| Sbjct: 84207 cttgtactactccaggaaaagttatgaatggattgtgcaataccctttgcaagattacct 84266 Query: 904 tgc 906 ||| Sbjct: 84267 tgc 84269 Score = 151 bits (76), Expect = 9e-33 Identities = 136/156 (87%) Strand = Plus / Plus Query: 241 agttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctg 300 |||||| || ||||||||||||||||||||||| | ||||||| |||||||||||||||| Sbjct: 82743 agttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctg 82802 Query: 301 gaaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtac 360 |||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| Sbjct: 82803 gaagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgg 82862 Query: 361 aaggcctactgttgctgagtacatgaattgctatga 396 |||||| ||||| |||||||||||||| |||||| Sbjct: 82863 aaggccaactgtgaatgagtacatgaattactatga 82898 Score = 91.7 bits (46), Expect = 7e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 1083 agactgtggaggatgatctgctggccagatgcaatcgcttgacaattgacagcggcgtgg 1142 ||||||| ||||||||||| |||| |||||||| ||||||||||||||||| ||| ||| Sbjct: 85159 agactgtagaggatgatcttctggacagatgcagtcgcttgacaattgacaatggcttgg 85218 Query: 1143 acaacagttctggcagttacatggagtagaaagg 1176 |||||| |||| |||| ||||||||||| |||| Sbjct: 85219 acaacaattctttcagtcacatggagtagtaagg 85252 Score = 81.8 bits (41), Expect = 7e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 1000 tgttagtgctccattgatgcaaatgtatgacagctatgcaagagagaaacagattggtgg 1059 |||||||||||||||||||||| ||||| | |||| | | ||||||||| |||||||| Sbjct: 84991 tgttagtgctccattgatgcaagcttatgaaaactatacgaaagagaaacatattggtgg 85050 Query: 1060 ccaacttttgcttcaaacatacaag 1084 ||| |||||||||||||||||||| Sbjct: 85051 tcaagttttgcttcaaacatacaag 85075 Score = 75.8 bits (38), Expect = 4e-10 Identities = 145/178 (81%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 490 ggttttaccccatctgatgcacaagagagatgactaccttttgagacagcttgagaaaat 549 ||||||||||||||||||||| ||| || ||||| ||| |||| |||||| |||||| Sbjct: 83669 ggttttaccccatctgatgcataagcaaggtgacttattttggagagagcttgtgaaaat 83728 Query: 550 gtggtcgaactattgtatcatggttaaatgtatatctggcttcttcaactatttggaccg 609 |||||| ||||||||| |||| ||| || | | ||||||| || |||||||||||| Sbjct: 83729 gtggtcaaactattgtgccatgattagattcacaactggctttttggcctatttggaccg 83788 Query: 610 ttgctttgttgagca-aagaaagctaccttgtcttgaagacactgctgccacttcttt 666 ||||||||| || |||||| ||||||| ||||||||| ||||||| |||||||| Sbjct: 83789 ctgctttgttacacataagaaa-ctaccttcgcttgaagacgctgctgctacttcttt 83845
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 157 bits (79), Expect = 2e-34 Identities = 157/183 (85%) Strand = Plus / Plus Query: 724 gattcgccaagagcgtgatggaagcaatgttgatatggacatcttgatggtcattatgcg 783 |||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct: 175582 gattcgccaagagcgtgatggatgcaatgttgatatggatcttttgatgggtattatgcg 175641 Query: 784 tggcatatgtcgctctgaagtcaaatccttcatgagaaatgctgttgtccaagatacata 843 |||||||||||| |||||||||||| || ||| || ||||||| | ||||||||||| Sbjct: 175642 tggcatatgtcgttctgaagtcaaaaccaagctgaaaagtgctgttattcaagatacata 175701 Query: 844 tgcttactactccaggaaaagttctgaatggatagttcagtaccctctacaagattacct 903 ||||||||||||||||||| ||||||||| || || |||||| | ||||||||||| Sbjct: 175702 cttgtactactccaggaaaagttatgaatggattgtgcaataccctttgcaagattacct 175761 Query: 904 tgc 906 ||| Sbjct: 175762 tgc 175764 Score = 151 bits (76), Expect = 9e-33 Identities = 136/156 (87%) Strand = Plus / Plus Query: 241 agttcactgtaggagcaaagcagtaaaaatgaatgcgcacctcagctttgaggatggctg 300 |||||| || ||||||||||||||||||||||| | ||||||| |||||||||||||||| Sbjct: 174238 agttcattgcaggagcaaagcagtaaaaatgaacgagcacctccgctttgaggatggctg 174297 Query: 301 gaaggtcctggaacagggcattttgacatgctcaaagattttggagggttccactggtac 360 |||| ||||||||||||| ||| ||| |||||||||| ||||||||| || | ||||| Sbjct: 174298 gaagatcctggaacaggggattgtgaaatgctcaaagcttttggaggattgccctggtgg 174357 Query: 361 aaggcctactgttgctgagtacatgaattgctatga 396 |||||| ||||| |||||||||||||| |||||| Sbjct: 174358 aaggccaactgtgaatgagtacatgaattactatga 174393 Score = 91.7 bits (46), Expect = 7e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 1083 agactgtggaggatgatctgctggccagatgcaatcgcttgacaattgacagcggcgtgg 1142 ||||||| ||||||||||| |||| |||||||| ||||||||||||||||| ||| ||| Sbjct: 176654 agactgtagaggatgatcttctggacagatgcagtcgcttgacaattgacaatggcttgg 176713 Query: 1143 acaacagttctggcagttacatggagtagaaagg 1176 |||||| |||| |||| ||||||||||| |||| Sbjct: 176714 acaacaattctttcagtcacatggagtagtaagg 176747 Score = 81.8 bits (41), Expect = 7e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 1000 tgttagtgctccattgatgcaaatgtatgacagctatgcaagagagaaacagattggtgg 1059 |||||||||||||||||||||| ||||| | |||| | | ||||||||| |||||||| Sbjct: 176486 tgttagtgctccattgatgcaagcttatgaaaactatacgaaagagaaacatattggtgg 176545 Query: 1060 ccaacttttgcttcaaacatacaag 1084 ||| |||||||||||||||||||| Sbjct: 176546 tcaagttttgcttcaaacatacaag 176570 Score = 75.8 bits (38), Expect = 4e-10 Identities = 145/178 (81%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 490 ggttttaccccatctgatgcacaagagagatgactaccttttgagacagcttgagaaaat 549 ||||||||||||||||||||| ||| || ||||| ||| |||| |||||| |||||| Sbjct: 175164 ggttttaccccatctgatgcataagcaaggtgacttattttggagagagcttgtgaaaat 175223 Query: 550 gtggtcgaactattgtatcatggttaaatgtatatctggcttcttcaactatttggaccg 609 |||||| ||||||||| |||| ||| || | | ||||||| || |||||||||||| Sbjct: 175224 gtggtcaaactattgtgccatgattagattcacaactggctttttggcctatttggaccg 175283 Query: 610 ttgctttgttgagca-aagaaagctaccttgtcttgaagacactgctgccacttcttt 666 ||||||||| || |||||| ||||||| ||||||||| ||||||| |||||||| Sbjct: 175284 ctgctttgttacacataagaaa-ctaccttcgcttgaagacgctgctgctacttcttt 175340
>gb|BT019124.1| Zea mays clone Contig738.F mRNA sequence Length = 931 Score = 52.0 bits (26), Expect = 0.006 Identities = 104/130 (80%) Strand = Plus / Minus Query: 986 ctctgtttgaaggttgttagtgctccattgatgcaaatgtatgacagctatgcaagagag 1045 ||||||||| ||| ||||| |||||| |||||| ||| |||| ||||||| | |||| Sbjct: 517 ctctgtttgcaggctgttaatgctcctttgatggaaacatatgtgagctatgtgacagag 458 Query: 1046 aaacagattggtggccaacttttgcttcaaacatacaagactgtggaggatgatctgctg 1105 |||||||| | ||| || || ||||| |||| ||||||| ||| ||||| || ||||| Sbjct: 457 aaacagatcgctggtcagctgatgcttgaaacgtacaagattgttgaggaggaactgctc 398 Query: 1106 gccagatgca 1115 | |||||||| Sbjct: 397 ggcagatgca 388 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 586 tggcttcttcaactatttggaccgttgct 614 ||||||||||| |||||||||||| |||| Sbjct: 914 tggcttcttcagctatttggaccgctgct 886
>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence Length = 153684 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Minus Query: 629 aagctaccttgtcttgaagacactgctg 656 ||||| |||||||||||||||||||||| Sbjct: 134780 aagctgccttgtcttgaagacactgctg 134753
>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence Length = 141316 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 629 aagctaccttgtcttgaagacactgctg 656 ||||| |||||||||||||||||||||| Sbjct: 123532 aagctgccttgtcttgaagacactgctg 123559
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcaccg 95 ||||||||||||||||||||||| Sbjct: 1675325 gacggcggcggcggcgagcaccg 1675347
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 gcgagacggcggcggcggcgagc 91 ||||||||||||||||||||||| Sbjct: 255616 gcgagacggcggcggcggcgagc 255638
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 gcgagacggcggcggcggcgagc 91 ||||||||||||||||||||||| Sbjct: 253708 gcgagacggcggcggcggcgagc 253730
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 cggcggcggcgagcaccgcccg 99 |||||||||||||||||||||| Sbjct: 2147413 cggcggcggcgagcaccgcccg 2147392
>ref|XM_869392.1| PREDICTED: Bos taurus similar to Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) (LOC617186), mRNA Length = 727 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1581 tctaagcttatctatgacttga 1602 |||||||||||||||||||||| Sbjct: 471 tctaagcttatctatgacttga 492
>ref|NM_001046066.1| Bos taurus histidyl-tRNA synthetase-like (HARSL), mRNA gb|BC112731.1| Bos taurus histidyl-tRNA synthetase-like, mRNA (cDNA clone MGC:137668 IMAGE:8163650), complete cds Length = 1926 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1581 tctaagcttatctatgacttga 1602 |||||||||||||||||||||| Sbjct: 356 tctaagcttatctatgacttga 377
>dbj|AK079004.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230108N11 product:unclassifiable, full insert sequence Length = 1042 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 573 ttaaatgtatatctggcttctt 594 |||||||||||||||||||||| Sbjct: 1034 ttaaatgtatatctggcttctt 1013
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 aggcgagacggcggcggcggcg 88 |||||||||||||||||||||| Sbjct: 5406372 aggcgagacggcggcggcggcg 5406393 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcac 93 ||||||||||||||||||||| Sbjct: 12585272 gacggcggcggcggcgagcac 12585292
>gb|AC016773.8| Homo sapiens BAC clone RP11-572O17 from 4, complete sequence Length = 189223 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Minus Query: 62 acggcaggcgagacggcggcggcggcgagc 91 |||||||||| || |||||||||||||||| Sbjct: 60927 acggcaggcgggaaggcggcggcggcgagc 60898
>emb|AL732490.10| Mouse DNA sequence from clone RP23-17C2 on chromosome 11 Contains part of a novel gene, the Phb gene for prohibitin and the 3' end of a novel gene, complete sequence Length = 84919 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 573 ttaaatgtatatctggcttctt 594 |||||||||||||||||||||| Sbjct: 40307 ttaaatgtatatctggcttctt 40328
>gb|AC141556.5| Homo sapiens 12 BAC RP11-386N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85712 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 651 ctgctgccacttcttttttctc 672 |||||||||||||||||||||| Sbjct: 5068 ctgctgccacttcttttttctc 5089
>dbj|AP005788.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515A04 Length = 146160 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 aggcgagacggcggcggcggcg 88 |||||||||||||||||||||| Sbjct: 89348 aggcgagacggcggcggcggcg 89369
>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1031_C12 Length = 157574 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 aggcgagacggcggcggcggcg 88 |||||||||||||||||||||| Sbjct: 12211 aggcgagacggcggcggcggcg 12232
>gb|M63543.1|HUMHDAD Human cosmid HDAD (8C10E13) DNA Length = 40103 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Plus Query: 62 acggcaggcgagacggcggcggcggcgagc 91 |||||||||| || |||||||||||||||| Sbjct: 28865 acggcaggcgggaaggcggcggcggcgagc 28894
>gb|M63544.1|HUMHDABCD Human DNA sequence of contig comprising 3 cosmids (HDAB, HDAC, HDAD) Length = 58864 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Plus Query: 62 acggcaggcgagacggcggcggcggcgagc 91 |||||||||| || |||||||||||||||| Sbjct: 47626 acggcaggcgggaaggcggcggcggcgagc 47655
>emb|CR855052.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0132O24, complete sequence Length = 75454 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 37950 gacggcggcggcggcgaggaccgcc 37974
>ref|NM_001073594.1| Oryza sativa (japonica cultivar-group) Os12g0567700 (Os12g0567700) mRNA, complete cds Length = 1071 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 53 ggcgagacggcggcggcggcg 33
>ref|NM_001069579.1| Oryza sativa (japonica cultivar-group) Os09g0376700 (Os09g0376700) mRNA, complete cds Length = 1325 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcac 93 ||||||||||||||||||||| Sbjct: 1225 gacggcggcggcggcgagcac 1245
>ref|NM_001061300.1| Oryza sativa (japonica cultivar-group) Os05g0169800 (Os05g0169800) mRNA, complete cds Length = 1323 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 369 cggcggcggcggcgagcaccg 389
>ref|NM_001058687.1| Oryza sativa (japonica cultivar-group) Os04g0173800 (Os04g0173800) mRNA, complete cds Length = 1095 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 139 gacggcggcggcggcgaggaccgcc 115
>ref|NM_001051328.1| Oryza sativa (japonica cultivar-group) Os01g0846900 (Os01g0846900) mRNA, complete cds Length = 2176 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 gagacggcggcggcggcgagc 91 ||||||||||||||||||||| Sbjct: 175 gagacggcggcggcggcgagc 155
>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841 Length = 5057142 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 1552843 cggcggcggcggcgagcaccg 1552823
>ref|XM_001135911.1| PREDICTED: Pan troglodytes ATP/GTP binding protein 1, transcript variant 1 (AGTPBP1), mRNA Length = 4385 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggcaggcgagacggcggcggcggcg 88 |||||||||| |||||||||||||| Sbjct: 97 ggcaggcgaggcggcggcggcggcg 73
>ref|XM_001136417.1| PREDICTED: Pan troglodytes ATP/GTP binding protein 1, transcript variant 4 (AGTPBP1), mRNA Length = 4396 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggcaggcgagacggcggcggcggcg 88 |||||||||| |||||||||||||| Sbjct: 117 ggcaggcgaggcggcggcggcggcg 93
>ref|XM_001136499.1| PREDICTED: Pan troglodytes ATP/GTP binding protein 1, transcript variant 5 (AGTPBP1), mRNA Length = 4516 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggcaggcgagacggcggcggcggcg 88 |||||||||| |||||||||||||| Sbjct: 117 ggcaggcgaggcggcggcggcggcg 93
>ref|XM_001136238.1| PREDICTED: Pan troglodytes ATP/GTP binding protein 1, transcript variant 2 (AGTPBP1), mRNA Length = 4428 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggcaggcgagacggcggcggcggcg 88 |||||||||| |||||||||||||| Sbjct: 87 ggcaggcgaggcggcggcggcggcg 63
>dbj|AK230086.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-72-I10 Length = 1671 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 87 acctattgagacagcttgagaaaat 111
>ref|NM_180669.1| Arabidopsis thaliana unknown protein (AT3G11560) mRNA, complete cds Length = 3037 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 2646 acctattgagacagcttgagaaaat 2670
>ref|NM_111989.3| Arabidopsis thaliana unknown protein (AT3G11560) mRNA, complete cds Length = 3194 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 2646 acctattgagacagcttgagaaaat 2670
>gb|AY023105.1| Oryza sativa microsatellite MRG5430 containing (GAG)X9, closest to marker R2232, genomic sequence Length = 227 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 140 cggcggcggcggcgagcaccg 160
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 12235 cggcggcggcggcgagcaccg 12215
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 acggcaggcgagacggcggcg 82 ||||||||||||||||||||| Sbjct: 1858343 acggcaggcgagacggcggcg 1858363
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 100450 cggcggcggcggcgagcaccg 100430
>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence Length = 147280 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 tattgtgaagagatgtacaat 451 ||||||||||||||||||||| Sbjct: 93132 tattgtgaagagatgtacaat 93112
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 23383691 ggcgagacggcggcggcggcg 23383671
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 20924733 cggcggcggcggcgagcaccg 20924753
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 29179297 ggcgagacggcggcggcggcg 29179317
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 4125756 cggcggcggcggcgagcaccg 4125736
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 4970649 gacggcggcggcggcgaggaccgcc 4970673
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 21615761 cggcggcggcggcgagcaccg 21615781
>emb|AL355336.15| Human DNA sequence from clone RP11-405O10 on chromosome 6 Contains the 5' end of the RREB1 gene for ras responsive element binding protein 1, part of a novel gene and CpG islands, complete sequence Length = 169616 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 tctggaacatttgtgtactagtgaa 182 ||||||||||||||||| ||||||| Sbjct: 133751 tctggaacatttgtgtagtagtgaa 133775
>gb|AY086649.1| Arabidopsis thaliana clone 265955 mRNA, complete sequence Length = 588 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 245 acctattgagacagcttgagaaaat 269
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gcggcggcggcgagcaccgcc 97 ||||||||||||||||||||| Sbjct: 277377 gcggcggcggcgagcaccgcc 277357
>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06, complete sequence Length = 147676 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 83056 gacggcggcggcggcgaggaccgcc 83080
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 gagacggcggcggcggcgagc 91 ||||||||||||||||||||| Sbjct: 35335 gagacggcggcggcggcgagc 35355
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 gagacggcggcggcggcgagc 91 ||||||||||||||||||||| Sbjct: 133373 gagacggcggcggcggcgagc 133393
>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_B08 Length = 131184 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 103034 cggcggcggcggcgagcaccg 103054
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1165_F02 Length = 125993 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 19371 ggcgagacggcggcggcggcg 19391
>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence Length = 117296 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 87956 acctattgagacagcttgagaaaat 87980
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 cggcggcggcggcgagcaccg 95 ||||||||||||||||||||| Sbjct: 104711 cggcggcggcggcgagcaccg 104731
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 75 cggcggcggcggcgagcaccgcccg 99 ||||||||||| ||||||||||||| Sbjct: 1925035 cggcggcggcgccgagcaccgcccg 1925011
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 114415 ggcgagacggcggcggcggcg 114435
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcac 93 ||||||||||||||||||||| Sbjct: 51210 gacggcggcggcggcgagcac 51230
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcac 93 ||||||||||||||||||||| Sbjct: 100599 gacggcggcggcggcgagcac 100619
>gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, complete sequence Length = 188171 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 63 cggcaggcgagacggcggcggcggc 87 ||||||||||| ||||||||||||| Sbjct: 126336 cggcaggcgaggcggcggcggcggc 126360
>dbj|AK104806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E03, full insert sequence Length = 1037 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 53 ggcgagacggcggcggcggcg 33
>dbj|AK103206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122E14, full insert sequence Length = 1097 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 140 gacggcggcggcggcgaggaccgcc 116
>dbj|AK101755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063K15, full insert sequence Length = 2176 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 gagacggcggcggcggcgagc 91 ||||||||||||||||||||| Sbjct: 175 gagacggcggcggcggcgagc 155
>dbj|AK070647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063F19, full insert sequence Length = 1072 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 54 ggcgagacggcggcggcggcg 34
>emb|BX647723.1|HSM807869 Homo sapiens mRNA; cDNA DKFZp686C2225 (from clone DKFZp686C2225) Length = 9088 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 tctggaacatttgtgtactagtgaa 182 ||||||||||||||||| ||||||| Sbjct: 544 tctggaacatttgtgtagtagtgaa 568
>gb|BT001998.1| Arabidopsis thaliana Unknown protein (At3g11570) mRNA, complete cds Length = 2946 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 accttttgagacagcttgagaaaat 549 |||| |||||||||||||||||||| Sbjct: 2585 acctattgagacagcttgagaaaat 2609
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgagacggcggcggcggcg 88 ||||||||||||||||||||| Sbjct: 118468 ggcgagacggcggcggcggcg 118488
>gb|M24504.1|RICLECTIN Oryza sativa lectin mRNA, complete cds Length = 1035 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 gacggcggcggcggcgagcaccgcc 97 |||||||||||||||||| |||||| Sbjct: 126 gacggcggcggcggcgaggaccgcc 102
>dbj|AB045121.1| Oryza sativa (japonica cultivar-group) RRF1 mRNA for RING finger 1, complete cds Length = 1453 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gacggcggcggcggcgagcac 93 ||||||||||||||||||||| Sbjct: 1225 gacggcggcggcggcgagcac 1245 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 303,039,816 Number of extensions: 16909733 Number of successful extensions: 456446 Number of sequences better than 10.0: 73 Number of HSP's gapped: 456431 Number of HSP's successfully gapped: 97 Length of query: 1632 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1609 Effective length of database: 18,503,978,556 Effective search space: 29772901496604 Effective search space used: 29772901496604 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)