ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf55c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O94953:JHD3B_HUMAN JmjC domain-containing histone demethylation ... 31 4.5
2Q9Y2P4:S27A6_HUMAN Long-chain fatty acid transport protein 6 - H... 30 7.7

>O94953:JHD3B_HUMAN JmjC domain-containing histone demethylation protein 3B - Homo|
           sapiens (Human)
          Length = 1096
 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 190 PGLPRSPAAAPSGPQLGMK--LQPLKHG*GSRSRAGSPLPGAVQAISPSVSSE 38
           P LP  PA  PS   L +   L+P   G G  +   SPLP  +  + P V SE
Sbjct: 464 PQLPPPPAHFPSEEALWLPSPLEPPVLGPGPAAMEESPLPAPLNVVPPEVPSE 516



to top

>Q9Y2P4:S27A6_HUMAN Long-chain fatty acid transport protein 6 - Homo sapiens (Human)|
          Length = 619

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +1

Query: 7   PSWVGTLEEMLQMRQMERLPALHLAVVTLLGFCCLIHASRAATSFPTAALRAQLQ 171
           P  V +L+E L     E +P  H  VV+LL   CL   +   T  P AA+ +QLQ
Sbjct: 187 PQGVISLKEKLSTSPDEPVPRSH-HVVSLLKSTCLYIFTSGTTGLPKAAVISQLQ 240


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 100,333,469
Number of extensions: 1980117
Number of successful extensions: 4925
Number of sequences better than 10.0: 2
Number of HSP's gapped: 4921
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 108
Effective length of database: 70,788,284
Effective search space: 7645134672
Effective search space used: 7645134672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top