ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf58n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001055897.1| Oryza sativa (japonica cultivar-group) Os03g... 56 3e-04
2gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 56 3e-04
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-04
4gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 56 3e-04
5dbj|AK120639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-04
6dbj|AK099757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-04
7gb|AF024491.1| Caenorhabditis elegans cosmid C24A1, complete seq... 46 0.30
8emb|CR954257.1| Anopheles gambiae Pen-1 region; BAC clone 32F02 ... 44 1.2
9emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chro... 44 1.2
10emb|BX842240.3| Zebrafish DNA sequence from clone DKEY-13I15 in ... 44 1.2
11gb|AC024810.1| Caenorhabditis elegans cosmid Y54E10A, complete s... 44 1.2
12emb|BX072534.9| Zebrafish DNA sequence from clone DKEY-16C1, com... 44 1.2
13ref|XM_001030852.1| Tetrahymena thermophila SB210 hypothetical p... 42 4.6
14ref|XM_640924.1| Dictyostelium discoideum AX4 hypothetical prote... 42 4.6
15gb|AY191427.1| Mycoplasma hyorhinis strain ATCC 23839 RNA polyme... 42 4.6
16gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, comple... 42 4.6
17gb|AC110603.7| Homo sapiens chromosome 18, clone CTD-2006O16, co... 42 4.6
18dbj|AK028736.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 4.6
19gb|AC084365.16| Homo sapiens 12 BAC RP11-632B21 (Roswell Park Ca... 42 4.6
20ref|XM_806337.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 4.6
21gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 4.6
22ref|XM_681838.1| PREDICTED: Danio rerio hypothetical protein LOC... 42 4.6
23gb|AC106895.5| Homo sapiens BAC clone RP11-161D15 from 4, comple... 42 4.6
24gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosom... 42 4.6
25emb|BX571681.7| Zebrafish DNA sequence from clone DKEY-73N10 in ... 42 4.6
26gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence 42 4.6
27gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome... 42 4.6
28gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone... 42 4.6
29gb|AC161759.5| Mus musculus BAC clone RP23-436J17 from chromosom... 42 4.6
30gb|L23846.1|POLVP4B Poliovirus type 3 Saukett E capsid protein (... 42 4.6
31gb|L23845.1|POLVP4A Poliovirus type 3 Saukett A capsid protein (... 42 4.6
32gb|L23844.1|POLVP4 Poliovirus type 3 Saukett COP capsid protein ... 42 4.6 
>ref|NM_001055897.1| Oryza sativa (japonica cultivar-group) Os03g0213400 (Os03g0213400)
            mRNA, partial cds
          Length = 3792
 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 288  aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
            |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 1785 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 1832
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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 288    aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
              |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 123118 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 123071
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                               
Query: 288     aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
               |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 5893501 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 5893454
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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 288   aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
             |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 43910 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 43863
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>dbj|AK120639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153O16, full
            insert sequence
          Length = 3353

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 288  aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
            |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 1315 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 1362
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>dbj|AK099757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093D24, full
            insert sequence
          Length = 3792

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 288  aaccaaggcagttcttcagcatggcagataattctctacacatgattc 335
            |||||||||||||| | |||||||||||||| |||||  |||||||||
Sbjct: 1785 aaccaaggcagttcctaagcatggcagataactctctcgacatgattc 1832
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>gb|AF024491.1| Caenorhabditis elegans cosmid C24A1, complete sequence
          Length = 39248

 Score = 46.1 bits (23), Expect = 0.30
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 657  ctattttttcaatttactttcgt 679
            |||||||||||||||||||||||
Sbjct: 8190 ctattttttcaatttactttcgt 8168
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>emb|CR954257.1| Anopheles gambiae Pen-1 region; BAC clone 32F02 from library NotreDame1
              of Anopheles gambiae (African malaria mosquito) strain PEST
          Length = 137277

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 725    gaatttgtttgatggtgttgtt 746
              ||||||||||||||||||||||
Sbjct: 102198 gaatttgtttgatggtgttgtt 102219
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>emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chromosome X, complete
             sequence
          Length = 125933

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 599   ttcagtctacttctctctgttt 620
             ||||||||||||||||||||||
Sbjct: 11972 ttcagtctacttctctctgttt 11993
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>emb|BX842240.3| Zebrafish DNA sequence from clone DKEY-13I15 in linkage group 20,
              complete sequence
          Length = 168556

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 851    atttattatttgtgatgttttt 872
              ||||||||||||||||||||||
Sbjct: 127437 atttattatttgtgatgttttt 127458
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>gb|AC024810.1| Caenorhabditis elegans cosmid Y54E10A, complete sequence
          Length = 101640

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1150  agaatgaatgcattttactgtg 1171
             ||||||||||||||||||||||
Sbjct: 68722 agaatgaatgcattttactgtg 68743
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>emb|BX072534.9| Zebrafish DNA sequence from clone DKEY-16C1, complete sequence
          Length = 205800

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 851   atttattatttgtgatgttttt 872
             ||||||||||||||||||||||
Sbjct: 82292 atttattatttgtgatgttttt 82271
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>ref|XM_001030852.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_01006600)
            mRNA, complete cds
          Length = 7173

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 816  acaaaaatattcacgcttttagatt 840
            ||||||| |||||||||||||||||
Sbjct: 4756 acaaaaagattcacgcttttagatt 4780
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>ref|XM_640924.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0190308)
            mRNA, complete cds
          Length = 5361

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 789  caatatttattgaaagcaaca 809
            |||||||||||||||||||||
Sbjct: 3202 caatatttattgaaagcaaca 3222
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>gb|AY191427.1| Mycoplasma hyorhinis strain ATCC 23839 RNA polymerase beta subunit
           (rpoB) gene, partial cds
          Length = 315

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 852 tttattatttgtgatgttttt 872
           |||||||||||||||||||||
Sbjct: 150 tttattatttgtgatgttttt 130
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>gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, complete sequence
          Length = 175645

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 656   tctattttttcaatttacttt 676
             |||||||||||||||||||||
Sbjct: 19801 tctattttttcaatttacttt 19821
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>gb|AC110603.7| Homo sapiens chromosome 18, clone CTD-2006O16, complete sequence
          Length = 149256

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 655   atctattttttcaatttactt 675
             |||||||||||||||||||||
Sbjct: 27226 atctattttttcaatttactt 27246
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>dbj|AK028736.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732450B20 product:ribosomal protein L32,
            pseudogene, full insert sequence
          Length = 2718

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1151 gaatgaatgcattttactgtgtgacaaag 1179
            |||| ||| ||||||||||||||||||||
Sbjct: 2692 gaataaatacattttactgtgtgacaaag 2664
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>gb|AC084365.16| Homo sapiens 12 BAC RP11-632B21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188629

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 950    agaattgtaaaacatgaatttctggaaga 978
              |||||||||||| |||||||| |||||||
Sbjct: 183109 agaattgtaaaatatgaatttgtggaaga 183081
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>ref|XM_806337.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506727.60) partial mRNA
          Length = 795

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 43  ttgacctcgtgcacggaggcg 63
           |||||||||||||||||||||
Sbjct: 235 ttgacctcgtgcacggaggcg 255
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 466     atttctaggttctatacaatc 486
               |||||||||||||||||||||
Sbjct: 1727393 atttctaggttctatacaatc 1727413
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>ref|XM_681838.1| PREDICTED: Danio rerio hypothetical protein LOC558609 (LOC558609),
            mRNA
          Length = 3990

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 408  ggactttgatgatgtgctttc 428
            |||||||||||||||||||||
Sbjct: 3498 ggactttgatgatgtgctttc 3478
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>gb|AC106895.5| Homo sapiens BAC clone RP11-161D15 from 4, complete sequence
          Length = 135450

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 958    aaaacatgaatttctggaaga 978
              |||||||||||||||||||||
Sbjct: 115911 aaaacatgaatttctggaaga 115931
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>gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosome ul, complete
             sequence
          Length = 178322

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   gattcagcatggcggatttgt 351
             |||||||||||||||||||||
Sbjct: 33975 gattcagcatggcggatttgt 33995
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>emb|BX571681.7| Zebrafish DNA sequence from clone DKEY-73N10 in linkage group 18,
             complete sequence
          Length = 184543

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 408   ggactttgatgatgtgctttc 428
             |||||||||||||||||||||
Sbjct: 11865 ggactttgatgatgtgctttc 11845
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>gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence
          Length = 100258

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 950   agaattgtaaaacatgaatttctggaaga 978
             |||||||||||| |||||||| |||||||
Sbjct: 86147 agaattgtaaaatatgaatttgtggaaga 86119
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>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence
          Length = 190832

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 1151   gaatgaatgcattttactgtgtgacaaag 1179
              |||| ||| ||||||||||||||||||||
Sbjct: 100088 gaataaatacattttactgtgtgacaaag 100116
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>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
             sequence
          Length = 218889

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1030  ttccctgctccacccccacagaagg 1054
             |||||||| ||||||||||||||||
Sbjct: 75908 ttccctgccccacccccacagaagg 75932
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>gb|AC161759.5| Mus musculus BAC clone RP23-436J17 from chromosome 15, complete
             sequence
          Length = 108899

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tattgtgctattactgtttga 373
             |||||||||||||||||||||
Sbjct: 73170 tattgtgctattactgtttga 73150
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>gb|L23846.1|POLVP4B Poliovirus type 3 Saukett E capsid protein (VP4, VP2, VP3, and VP1)
           RNA, 5'end
          Length = 2634

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 498 tcaattcaccaaatgtggagg 518
           |||||||||||||||||||||
Sbjct: 203 tcaattcaccaaatgtggagg 223
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>gb|L23845.1|POLVP4A Poliovirus type 3 Saukett A capsid protein (VP4, VP2, VP3, and VP1)
           RNA, 5' end
          Length = 2634

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 498 tcaattcaccaaatgtggagg 518
           |||||||||||||||||||||
Sbjct: 203 tcaattcaccaaatgtggagg 223
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>gb|L23844.1|POLVP4 Poliovirus type 3 Saukett COP capsid protein (VP4, VP2, VP3, and
           VP1) RNA, 5' end
          Length = 2634

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 498 tcaattcaccaaatgtggagg 518
           |||||||||||||||||||||
Sbjct: 203 tcaattcaccaaatgtggagg 223


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 239,229,766
Number of extensions: 13264948
Number of successful extensions: 268263
Number of sequences better than 10.0: 32
Number of HSP's gapped: 268263
Number of HSP's successfully gapped: 32
Length of query: 1224
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1201
Effective length of database: 18,503,978,556
Effective search space: 22223278245756
Effective search space used: 22223278245756
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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