No.
Definition
Score (bits)
E Value
1 ref|NM_001059372.1| Oryza sativa (japonica cultivar-group) Os04g...
438
e-119
2 dbj|AK073390.1| Oryza sativa (japonica cultivar-group) cDNA clon...
438
e-119
3 dbj|AK068114.1| Oryza sativa (japonica cultivar-group) cDNA clon...
430
e-116
4 dbj|AK061916.1| Oryza sativa (japonica cultivar-group) cDNA clon...
232
5e-57
5 emb|CR855153.1| Oryza sativa genomic DNA, chromosome 4, BAC clon...
176
2e-40
6 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
176
2e-40
7 emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4,...
176
2e-40
8 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
62
1e-05
9 dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic D...
62
1e-05
10 dbj|AP006659.1| Lotus japonicus genomic DNA, chromosome 5, clone...
48
0.14
11 emb|Z79599.1|CEF47C8 Caenorhabditis elegans Cosmid F47C8, comple...
46
0.57
12 gb|AC193778.1| Solanum lycopersicum chromosome 4 clone C04HBa010...
44
2.3
13 emb|CT833294.1| Oryza sativa (indica cultivar-group) cDNA clone:...
44
2.3
14 ref|NM_001053637.1| Oryza sativa (japonica cultivar-group) Os02g...
44
2.3
15 ref|NM_001045482.1| Mus musculus RB-associated KRAB repressor (R...
44
2.3
16 ref|NM_021326.2| Mus musculus RB-associated KRAB repressor (Rbak...
44
2.3
17 emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete se...
44
2.3
18 gb|BC059913.1| Mus musculus RB-associated KRAB repressor, mRNA (...
44
2.3
19 gb|AC123686.11| Mus musculus chromosome 5, clone RP23-301L9, com...
44
2.3
20 emb|AL935124.31| Mouse DNA sequence from clone RP23-88C15 on chr...
44
2.3
21 dbj|AK051009.1| Mus musculus 9 days embryo whole body cDNA, RIKE...
44
2.3
22 gb|AC090531.18| Homo sapiens 12q BAC RP11-413B19 (Roswell Park C...
44
2.3
23 gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1...
44
2.3
24 emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chrom...
44
2.3
25 dbj|AK106428.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
2.3
26 ref|XM_001029234.1| Tetrahymena thermophila SB210 hypothetical p...
42
8.9
27 gb|CP000479.1| Mycobacterium avium 104, complete genome
42
8.9
28 ref|XR_026720.1| PREDICTED: Gallus gallus similar to 4930535B03R...
42
8.9
29 gb|AC166093.12| Medicago truncatula clone mth2-17k6, complete se...
42
8.9
30 gb|AC186673.3| Mus musculus BAC clone RP23-42L9 from chromosome ...
42
8.9
31 gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete ...
42
8.9
32 gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
42
8.9
33 gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, c...
42
8.9
34 gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, com...
42
8.9
35 gb|AC102509.6| Mus musculus chromosome 7, clone RP24-327G7, comp...
42
8.9
36 ref|XM_710819.1| Candida albicans SC5314 hypothetical protein (C...
42
8.9
37 ref|XM_710769.1| Candida albicans SC5314 hypothetical protein (C...
42
8.9
38 gb|AE006733.1| Sulfolobus solfataricus P2 section 92 of 272 of t...
42
8.9
39 gb|AC107794.13| Mus musculus chromosome 6, clone RP23-473P21, co...
42
8.9
40 gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, compl...
42
8.9
41 gb|AC104833.6| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, R...
42
8.9
42 ref|XM_960964.1| Plasmodium falciparum 3D7 coatomer subunit alph...
42
8.9
43 ref|NM_001078526.1| Ciona intestinalis transcription factor prot...
42
8.9
44 gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complet...
42
8.9
45 gb|AC158524.2| Mus musculus BAC clone RP23-377I1 from chromosome...
42
8.9
46 emb|CR382398.1| Plasmodium falciparum chromosome 6, complete seq...
42
8.9
47 emb|AJ720606.1| Gallus gallus mRNA for hypothetical protein, clo...
42
8.9
48 gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cance...
42
8.9
49 gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromo...
42
8.9
50 gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complet...
42
8.9
51 emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 i...
42
8.9
52 emb|CR524327.1| Gallus gallus finished cDNA, clone ChEST817d21
42
8.9
53 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
42
8.9
54 emb|AL627076.14| Mouse DNA sequence from clone RP23-402I22 on ch...
42
8.9
>dbj|AK068114.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013133O21, full
insert sequence
Length = 2203
Score = 430 bits (217), Expect = e-116
Identities = 367/417 (88%)
Strand = Plus / Plus
Query: 878 gatatcaattctagcttttgaggttgctaacacaatactgaaaggcgcgagtgttatgca 937
|||||||||||| |||||||||||||| ||||| ||| ||||||| || | | |||||||
Sbjct: 421 gatatcaattcttgcttttgaggttgcaaacacgatattgaaaggtgctactattatgca 480
Query: 938 atctctctccgaagactctgtcacatactttaaacaggtggtgcttccctctgaaggtgt 997
|||||| || |||||| |||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 481 atctctttcggaagacactgttacatacttcaaacaagtggtgcttccttctgaaggcgt 540
Query: 998 gcagaatttgatttccagtgatatgggcgagttgatgcggattgtagctaatgacagaag 1057
||||||||| ||||||||||| ||| | | |||||||||||||||||| ||||||| |||
Sbjct: 541 gcagaatttaatttccagtgacatgagtgtgttgatgcggattgtagccaatgacaaaag 600
Query: 1058 ggaagagctgaaagtattttcacaagagattgtgaggtttggcaaccgttgtaaagatcc 1117
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 601 ggaagagctgaaaatattttcacaagagattgtcagatttggcaaccgttgtaaagatcc 660
Query: 1118 ccaatggcataatctggaccgctattttgtaaaactagaatcagaaagtgtaccccagaa 1177
|||||||||||| ||||||||||||||||| || |||||||| |||| | ||| ||| |
Sbjct: 661 ccaatggcataacctggaccgctattttgtcaagctagaatcggaaaatccaccacagta 720
Query: 1178 gcagctgaaagaaactgccacagtggagatgcaaaagctgatggctcttgttcaacgtac 1237
|||||| |||||||| || | |||||||||||| |||||| ||||||||| |||||
Sbjct: 721 gcagctaaaagaaacagcagttgcagagatgcaaaagttgatggatcttgttcatcgtac 780
Query: 1238 aactgatttgtatcatgagctgcatgccttagatagatttgagcaagattaccgctg 1294
||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 781 aactgatttgtatcacgagctgcatgcgttggatagatttgagcaagattatcgctg 837
Score = 232 bits (117), Expect = 5e-57
Identities = 198/225 (88%)
Strand = Plus / Plus
Query: 1768 tgaaatggcttgttccgatggccatcaataccacctgtgcccgaggcttcttgcggttta 1827
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1548 tgaaatggcttgttccaatggccatcaataccacgtgtgcccgaggcttcttgcggttta 1607
Query: 1828 gtgaatgggcaaaatcagggaccgagcgggttggaagaggaccaggtcgaccggacgtga 1887
| |||||||| | ||||||||| ||| |||||||||| | ||||| | ||||||||||
Sbjct: 1608 gcgaatgggcgagatcagggactgagagggttggaaggaggccaggccaaccggacgtgg 1667
Query: 1888 tcgagacgctctaccacgccgacaaggcaaagacagaggcttacatacttgagttggtcg 1947
|||||||||||||||| || |||||||| ||||| |||| ||||| || || |||| |
Sbjct: 1668 tcgagacgctctaccatgcggacaaggcgaagaccgaggactacattctggacctggttg 1727
Query: 1948 tgtggcttcaccaccttgtcagccagagcaaccggccggcaaatg 1992
| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1728 tctggcttcaccaccttgtcaaccagagtaaccggccggcaaatg 1772
Score = 103 bits (52), Expect = 3e-18
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1532 ctgtcagagactaggacctgccggacttgcgttgcactatgcaaacactatcatacagat 1591
|||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 1087 ctgtcagagactaggacctgccggacttgcattacactatgcaaatattatcatacagat 1146
Query: 1592 ctatagcattgt 1603
||||||| ||||
Sbjct: 1147 ctatagcgttgt 1158
Score = 93.7 bits (47), Expect = 3e-15
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 1394 cttgaagaaaagatctctgtggtcaaagacattggaacaagttgttgagaagcttgttga 1453
|||||||||||||||| ||||||| |||||||||||| | |||||||||||||||| ||
Sbjct: 943 cttgaagaaaagatctttgtggtccaagacattggaagatattgttgagaagcttgtaga 1002
Query: 1454 cattgtgcaatatttacatgttgagatcagtgtctcatatggaacttatgatggaagtga 1513
||| ||||| || || ||| ||||||||| | || | |||| ||| ||||| | ||||
Sbjct: 1003 catcgtgcagtacttgcattttgagatcaacgcttcttttggatcttctgatgaaggtga 1062
Query: 1514 attgagttctg 1524
|||||||||||
Sbjct: 1063 attgagttctg 1073
Score = 65.9 bits (33), Expect = 6e-07
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 1602 gtttctcggtcagggtatgtacctgcaaattcaagagacgccctttaccaaggattgcca 1661
|||||||| ||||| ||| |||| ||||| ||||||| || || |||||||||||||||
Sbjct: 1391 gtttctcgatcaggatatataccaccaaatacaagagatgctctctaccaaggattgcca 1450
Query: 1662 ccaacggtcaggttggctctgccaaataaattaagaacttcctcaatgcctcgggag 1718
|||| || || | ||| || || |||| |||||||||||| ||| |||||| ||||
Sbjct: 1451 ccaagagtgagatcggcactacctaatagattaagaacttcgtcagtgcctcaggag 1507
>emb|CR855153.1 | Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete
sequence
Length = 85663
Score = 176 bits (89), Expect = 2e-40
Identities = 158/181 (87%)
Strand = Plus / Minus
Query: 878 gatatcaattctagcttttgaggttgctaacacaatactgaaaggcgcgagtgttatgca 937
|||||||||||| |||||||||||||| ||||| ||| ||||||| || | | |||||||
Sbjct: 15480 gatatcaattcttgcttttgaggttgcaaacacgatattgaaaggtgctactattatgca 15421
Query: 938 atctctctccgaagactctgtcacatactttaaacaggtggtgcttccctctgaaggtgt 997
|||||| || |||||| |||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 15420 atctctttcggaagacactgttacatacttcaaacaagtggtgcttccttctgaaggcgt 15361
Query: 998 gcagaatttgatttccagtgatatgggcgagttgatgcggattgtagctaatgacagaag 1057
||||||||| ||||||||||| ||| | | |||||||||||||||||| ||||||| |||
Sbjct: 15360 gcagaatttaatttccagtgacatgagtgtgttgatgcggattgtagccaatgacaaaag 15301
Query: 1058 g 1058
|
Sbjct: 15300 g 15300
Score = 151 bits (76), Expect = 1e-32
Identities = 88/92 (95%)
Strand = Plus / Minus
Query: 1056 agggaagagctgaaagtattttcacaagagattgtgaggtttggcaaccgttgtaaagat 1115
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 15209 agggaagagctgaaaatattttcacaagagattgtcagatttggcaaccgttgtaaagat 15150
Query: 1116 ccccaatggcataatctggaccgctattttgt 1147
|||||||||||||| |||||||||||||||||
Sbjct: 15149 ccccaatggcataacctggaccgctattttgt 15118
Score = 117 bits (59), Expect = 2e-22
Identities = 125/147 (85%)
Strand = Plus / Minus
Query: 1846 ggaccgagcgggttggaagaggaccaggtcgaccggacgtgatcgagacgctctaccacg 1905
|||| ||| |||||||||| | ||||| | |||||||||| |||||||||||||||| |
Sbjct: 13314 ggactgagagggttggaaggaggccaggccaaccggacgtggtcgagacgctctaccatg 13255
Query: 1906 ccgacaaggcaaagacagaggcttacatacttgagttggtcgtgtggcttcaccaccttg 1965
| |||||||| ||||| |||| ||||| || || |||| || ||||||||||||||||
Sbjct: 13254 cggacaaggcgaagaccgaggactacattctggacctggttgtctggcttcaccaccttg 13195
Query: 1966 tcagccagagcaaccggccggcaaatg 1992
||| |||||| ||||||||||||||||
Sbjct: 13194 tcaaccagagtaaccggccggcaaatg 13168
Score = 103 bits (52), Expect = 3e-18
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1532 ctgtcagagactaggacctgccggacttgcgttgcactatgcaaacactatcatacagat 1591
|||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 14154 ctgtcagagactaggacctgccggacttgcattacactatgcaaatattatcatacagat 14095
Query: 1592 ctatagcattgt 1603
||||||| ||||
Sbjct: 14094 ctatagcgttgt 14083
Score = 73.8 bits (37), Expect = 3e-09
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1242 gatttgtatcatgagctgcatgccttagatagatttgagcaagattaccgctg 1294
||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 14870 gatttgtatcacgagctgcatgcgttggatagatttgagcaagattatcgctg 14818
Score = 63.9 bits (32), Expect = 2e-06
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1804 gtgcccgaggcttcttgcggtttagtgaatgggcaaaatcaggg 1847
||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 13460 gtgcccgaggcttcttgcggtttagcgaatgggcgagatcaggg 13417
Score = 63.9 bits (32), Expect = 2e-06
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 1602 gtttctcggtcagggtatgtacctgcaaattcaagagacgccctttaccaaggattgcca 1661
|||||||| ||||| ||| |||| ||||| ||||||| | || |||||||||||||||
Sbjct: 13850 gtttctcgatcaggatatataccaccaaatacaagagattctctctaccaaggattgcca 13791
Query: 1662 ccaacggtcaggttggctctgccaaataaattaagaacttcctcaatgcctcgggaggta 1721
|||| || || | ||| || || |||| |||||||||||| ||| |||||| ||||||
Sbjct: 13790 ccaagagtgagatcggcactacctaatagattaagaacttcgtcagtgcctcaggaggtg 13731
Query: 1722 atac 1725
||||
Sbjct: 13730 atac 13727
Score = 60.0 bits (30), Expect = 4e-05
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1768 tgaaatggcttgttccgatggccatcaataccac 1801
|||||||||||||||| |||||||||||||||||
Sbjct: 13618 tgaaatggcttgttccaatggccatcaataccac 13585
Score = 58.0 bits (29), Expect = 2e-04
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 1394 cttgaagaaaagatctctgtggtcaaagacattggaa 1430
|||||||||||||||| ||||||| ||||||||||||
Sbjct: 14464 cttgaagaaaagatctttgtggtccaagacattggaa 14428
Score = 56.0 bits (28), Expect = 6e-04
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1203 gagatgcaaaagctgatggctcttgttcaacgtacaactg 1242
|||||||||||| |||||| ||||||||| ||||||||||
Sbjct: 14983 gagatgcaaaagttgatggatcttgttcatcgtacaactg 14944
Score = 48.1 bits (24), Expect = 0.14
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1435 ttgttgagaagcttgttgacattgtgcaatatttacatgttgagatca 1482
|||||||||||||||| ||||| ||||| || || ||| |||||||||
Sbjct: 14334 ttgttgagaagcttgtagacatcgtgcagtacttgcattttgagatca 14287
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
Length = 35498469
Score = 176 bits (89), Expect = 2e-40
Identities = 158/181 (87%)
Strand = Plus / Minus
Query: 878 gatatcaattctagcttttgaggttgctaacacaatactgaaaggcgcgagtgttatgca 937
|||||||||||| |||||||||||||| ||||| ||| ||||||| || | | |||||||
Sbjct: 21550541 gatatcaattcttgcttttgaggttgcaaacacgatattgaaaggtgctactattatgca 21550482
Query: 938 atctctctccgaagactctgtcacatactttaaacaggtggtgcttccctctgaaggtgt 997
|||||| || |||||| |||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 21550481 atctctttcggaagacactgttacatacttcaaacaagtggtgcttccttctgaaggcgt 21550422
Query: 998 gcagaatttgatttccagtgatatgggcgagttgatgcggattgtagctaatgacagaag 1057
||||||||| ||||||||||| ||| | | |||||||||||||||||| ||||||| |||
Sbjct: 21550421 gcagaatttaatttccagtgacatgagtgtgttgatgcggattgtagccaatgacaaaag 21550362
Query: 1058 g 1058
|
Sbjct: 21550361 g 21550361
Score = 151 bits (76), Expect = 1e-32
Identities = 88/92 (95%)
Strand = Plus / Minus
Query: 1056 agggaagagctgaaagtattttcacaagagattgtgaggtttggcaaccgttgtaaagat 1115
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 21550270 agggaagagctgaaaatattttcacaagagattgtcagatttggcaaccgttgtaaagat 21550211
Query: 1116 ccccaatggcataatctggaccgctattttgt 1147
|||||||||||||| |||||||||||||||||
Sbjct: 21550210 ccccaatggcataacctggaccgctattttgt 21550179
Score = 117 bits (59), Expect = 2e-22
Identities = 125/147 (85%)
Strand = Plus / Minus
Query: 1846 ggaccgagcgggttggaagaggaccaggtcgaccggacgtgatcgagacgctctaccacg 1905
|||| ||| |||||||||| | ||||| | |||||||||| |||||||||||||||| |
Sbjct: 21548378 ggactgagagggttggaaggaggccaggccaaccggacgtggtcgagacgctctaccatg 21548319
Query: 1906 ccgacaaggcaaagacagaggcttacatacttgagttggtcgtgtggcttcaccaccttg 1965
| |||||||| ||||| |||| ||||| || || |||| || ||||||||||||||||
Sbjct: 21548318 cggacaaggcgaagaccgaggactacattctggacctggttgtctggcttcaccaccttg 21548259
Query: 1966 tcagccagagcaaccggccggcaaatg 1992
||| |||||| ||||||||||||||||
Sbjct: 21548258 tcaaccagagtaaccggccggcaaatg 21548232
Score = 103 bits (52), Expect = 3e-18
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1532 ctgtcagagactaggacctgccggacttgcgttgcactatgcaaacactatcatacagat 1591
|||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 21549218 ctgtcagagactaggacctgccggacttgcattacactatgcaaatattatcatacagat 21549159
Query: 1592 ctatagcattgt 1603
||||||| ||||
Sbjct: 21549158 ctatagcgttgt 21549147
Score = 73.8 bits (37), Expect = 3e-09
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1242 gatttgtatcatgagctgcatgccttagatagatttgagcaagattaccgctg 1294
||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 21549932 gatttgtatcacgagctgcatgcgttggatagatttgagcaagattatcgctg 21549880
Score = 71.9 bits (36), Expect = 1e-08
Identities = 102/124 (82%)
Strand = Plus / Minus
Query: 1602 gtttctcggtcagggtatgtacctgcaaattcaagagacgccctttaccaaggattgcca 1661
|||||||| ||||| ||| |||| ||||| ||||||| || || |||||||||||||||
Sbjct: 21548914 gtttctcgatcaggatatataccaccaaatacaagagatgctctctaccaaggattgcca 21548855
Query: 1662 ccaacggtcaggttggctctgccaaataaattaagaacttcctcaatgcctcgggaggta 1721
|||| || || | ||| || || |||| |||||||||||| ||| |||||| ||||||
Sbjct: 21548854 ccaagagtgagatcggcactacctaatagattaagaacttcgtcagtgcctcaggaggtg 21548795
Query: 1722 atac 1725
||||
Sbjct: 21548794 atac 21548791
Score = 63.9 bits (32), Expect = 2e-06
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1804 gtgcccgaggcttcttgcggtttagtgaatgggcaaaatcaggg 1847
||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 21548524 gtgcccgaggcttcttgcggtttagcgaatgggcgagatcaggg 21548481
Score = 60.0 bits (30), Expect = 4e-05
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1768 tgaaatggcttgttccgatggccatcaataccac 1801
|||||||||||||||| |||||||||||||||||
Sbjct: 21548682 tgaaatggcttgttccaatggccatcaataccac 21548649
Score = 58.0 bits (29), Expect = 2e-04
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 1394 cttgaagaaaagatctctgtggtcaaagacattggaa 1430
|||||||||||||||| ||||||| ||||||||||||
Sbjct: 21549528 cttgaagaaaagatctttgtggtccaagacattggaa 21549492
Score = 56.0 bits (28), Expect = 6e-04
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1203 gagatgcaaaagctgatggctcttgttcaacgtacaactg 1242
|||||||||||| |||||| ||||||||| ||||||||||
Sbjct: 21550044 gagatgcaaaagttgatggatcttgttcatcgtacaactg 21550005
Score = 48.1 bits (24), Expect = 0.14
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1435 ttgttgagaagcttgttgacattgtgcaatatttacatgttgagatca 1482
|||||||||||||||| ||||| ||||| || || ||| |||||||||
Sbjct: 21549398 ttgttgagaagcttgtagacatcgtgcagtacttgcattttgagatca 21549351
>emb|AL606626.3 |OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19,
complete sequence
Length = 156002
Score = 176 bits (89), Expect = 2e-40
Identities = 158/181 (87%)
Strand = Plus / Minus
Query: 878 gatatcaattctagcttttgaggttgctaacacaatactgaaaggcgcgagtgttatgca 937
|||||||||||| |||||||||||||| ||||| ||| ||||||| || | | |||||||
Sbjct: 72630 gatatcaattcttgcttttgaggttgcaaacacgatattgaaaggtgctactattatgca 72571
Query: 938 atctctctccgaagactctgtcacatactttaaacaggtggtgcttccctctgaaggtgt 997
|||||| || |||||| |||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 72570 atctctttcggaagacactgttacatacttcaaacaagtggtgcttccttctgaaggcgt 72511
Query: 998 gcagaatttgatttccagtgatatgggcgagttgatgcggattgtagctaatgacagaag 1057
||||||||| ||||||||||| ||| | | |||||||||||||||||| ||||||| |||
Sbjct: 72510 gcagaatttaatttccagtgacatgagtgtgttgatgcggattgtagccaatgacaaaag 72451
Query: 1058 g 1058
|
Sbjct: 72450 g 72450
Score = 151 bits (76), Expect = 1e-32
Identities = 88/92 (95%)
Strand = Plus / Minus
Query: 1056 agggaagagctgaaagtattttcacaagagattgtgaggtttggcaaccgttgtaaagat 1115
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 72359 agggaagagctgaaaatattttcacaagagattgtcagatttggcaaccgttgtaaagat 72300
Query: 1116 ccccaatggcataatctggaccgctattttgt 1147
|||||||||||||| |||||||||||||||||
Sbjct: 72299 ccccaatggcataacctggaccgctattttgt 72268
Score = 117 bits (59), Expect = 2e-22
Identities = 125/147 (85%)
Strand = Plus / Minus
Query: 1846 ggaccgagcgggttggaagaggaccaggtcgaccggacgtgatcgagacgctctaccacg 1905
|||| ||| |||||||||| | ||||| | |||||||||| |||||||||||||||| |
Sbjct: 70467 ggactgagagggttggaaggaggccaggccaaccggacgtggtcgagacgctctaccatg 70408
Query: 1906 ccgacaaggcaaagacagaggcttacatacttgagttggtcgtgtggcttcaccaccttg 1965
| |||||||| ||||| |||| ||||| || || |||| || ||||||||||||||||
Sbjct: 70407 cggacaaggcgaagaccgaggactacattctggacctggttgtctggcttcaccaccttg 70348
Query: 1966 tcagccagagcaaccggccggcaaatg 1992
||| |||||| ||||||||||||||||
Sbjct: 70347 tcaaccagagtaaccggccggcaaatg 70321
Score = 103 bits (52), Expect = 3e-18
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1532 ctgtcagagactaggacctgccggacttgcgttgcactatgcaaacactatcatacagat 1591
|||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 71307 ctgtcagagactaggacctgccggacttgcattacactatgcaaatattatcatacagat 71248
Query: 1592 ctatagcattgt 1603
||||||| ||||
Sbjct: 71247 ctatagcgttgt 71236
Score = 73.8 bits (37), Expect = 3e-09
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1242 gatttgtatcatgagctgcatgccttagatagatttgagcaagattaccgctg 1294
||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 72021 gatttgtatcacgagctgcatgcgttggatagatttgagcaagattatcgctg 71969
Score = 71.9 bits (36), Expect = 1e-08
Identities = 102/124 (82%)
Strand = Plus / Minus
Query: 1602 gtttctcggtcagggtatgtacctgcaaattcaagagacgccctttaccaaggattgcca 1661
|||||||| ||||| ||| |||| ||||| ||||||| || || |||||||||||||||
Sbjct: 71003 gtttctcgatcaggatatataccaccaaatacaagagatgctctctaccaaggattgcca 70944
Query: 1662 ccaacggtcaggttggctctgccaaataaattaagaacttcctcaatgcctcgggaggta 1721
|||| || || | ||| || || |||| |||||||||||| ||| |||||| ||||||
Sbjct: 70943 ccaagagtgagatcggcactacctaatagattaagaacttcgtcagtgcctcaggaggtg 70884
Query: 1722 atac 1725
||||
Sbjct: 70883 atac 70880
Score = 63.9 bits (32), Expect = 2e-06
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1804 gtgcccgaggcttcttgcggtttagtgaatgggcaaaatcaggg 1847
||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 70613 gtgcccgaggcttcttgcggtttagcgaatgggcgagatcaggg 70570
Score = 60.0 bits (30), Expect = 4e-05
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1768 tgaaatggcttgttccgatggccatcaataccac 1801
|||||||||||||||| |||||||||||||||||
Sbjct: 70771 tgaaatggcttgttccaatggccatcaataccac 70738
Score = 58.0 bits (29), Expect = 2e-04
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 1394 cttgaagaaaagatctctgtggtcaaagacattggaa 1430
|||||||||||||||| ||||||| ||||||||||||
Sbjct: 71617 cttgaagaaaagatctttgtggtccaagacattggaa 71581
Score = 56.0 bits (28), Expect = 6e-04
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1203 gagatgcaaaagctgatggctcttgttcaacgtacaactg 1242
|||||||||||| |||||| ||||||||| ||||||||||
Sbjct: 72133 gagatgcaaaagttgatggatcttgttcatcgtacaactg 72094
Score = 48.1 bits (24), Expect = 0.14
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1435 ttgttgagaagcttgttgacattgtgcaatatttacatgttgagatca 1482
|||||||||||||||| ||||| ||||| || || ||| |||||||||
Sbjct: 71487 ttgttgagaagcttgtagacatcgtgcagtacttgcattttgagatca 71440
>dbj|AP006659.1 | Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L15, TM0344,
complete sequence
Length = 87645
Score = 48.1 bits (24), Expect = 0.14
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1095 tttggcaaccgttgtaaagatccccaatggcataatctggaccgctattttg 1146
||||| || |||||||||||||| || ||||| || ||||| ||||||||||
Sbjct: 80094 tttggaaatcgttgtaaagatcctcagtggcacaacctggatcgctattttg 80145
Score = 42.1 bits (21), Expect = 8.9
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1248 tatcatgagctgcatgccttagatagatttgagcaagatta 1288
|||||||| ||||||||||||| || ||||| ||||||||
Sbjct: 80549 tatcatgaattgcatgccttagacaggtttgatcaagatta 80589
>emb|AL627076.14 | Mouse DNA sequence from clone RP23-402I22 on chromosome 4, complete
sequence
Length = 163353
Score = 42.1 bits (21), Expect = 8.9
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 872 gactcagatatcaattctagc 892
|||||||||||||||||||||
Sbjct: 65632 gactcagatatcaattctagc 65612
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 424,209,979
Number of extensions: 22645014
Number of successful extensions: 126906
Number of sequences better than 10.0: 54
Number of HSP's gapped: 126895
Number of HSP's successfully gapped: 102
Length of query: 2335
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2312
Effective length of database: 18,503,978,556
Effective search space: 42781198421472
Effective search space used: 42781198421472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)