ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf54p20 |
|---|---|
| Clone Library Name | barley_pub |
>Q9FHW7:SKP1B_ARATH SKP1-like protein 1B - Arabidopsis thaliana (Mouse-ear cress)| Length = 171 Score = 184 bits (468), Expect = 3e-46 Identities = 96/168 (57%), Positives = 111/168 (66%), Gaps = 5/168 (2%) Frame = +3 Query: 117 VKNLTLKXXXXXXXXXXXXXXXXXQTIKHLVDDGCADNIIPLPNVSANILIKVIDYCKQH 296 V+ +TLK QTIKH+++D C DN IPLPNV++ IL KVI+YCK+H Sbjct: 4 VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRH 63 Query: 297 VLNGXXXXXXXXXXXXXXVKP-----DEVNLKAFDEHFVKVDQTVLFDLILAANYLEIKG 461 V + +LK +D F+KVDQ LFDLILAANYL IKG Sbjct: 64 VEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKG 123 Query: 462 LLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQEEEEIRRENQWAFE 605 LLDLTCQTVADMIKGKTPEEIRKTFNI NDFTP+EEEE+RRENQWAFE Sbjct: 124 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>Q39255:SKP1A_ARATH SKP1-like protein 1A - Arabidopsis thaliana (Mouse-ear cress)| Length = 160 Score = 177 bits (449), Expect = 5e-44 Identities = 88/139 (63%), Positives = 103/139 (74%) Frame = +3 Query: 189 QTIKHLVDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEV 368 QTI H+V+D C DN +PLPNV++ IL KVI+YCK+HV + Sbjct: 27 QTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV-----EAAASKAEAVEGAATSDD 81 Query: 369 NLKAFDEHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVN 548 +LKA+D F+K+DQ LF+LILAANYL IK LLDLTCQTVADMIKGKTPEEIR TFNI N Sbjct: 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKN 141 Query: 549 DFTPQEEEEIRRENQWAFE 605 DFTP+EEEE+RRENQWAFE Sbjct: 142 DFTPEEEEEVRRENQWAFE 160
>P52285:FP21_DICDI Glycoprotein FP21 precursor - Dictyostelium discoideum (Slime mold)| Length = 162 Score = 144 bits (363), Expect = 5e-34 Identities = 77/139 (55%), Positives = 99/139 (71%), Gaps = 4/139 (2%) Frame = +3 Query: 192 TIKHLVDD-GCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEV 368 TIK++++D G +D+ IPLPNV++ IL KV+DYC+ H + K DE Sbjct: 26 TIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDD---------KKDEK 76 Query: 369 NLK---AFDEHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFN 539 L +D F KVDQ LF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FN Sbjct: 77 RLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFN 136 Query: 540 IVNDFTPQEEEEIRRENQW 596 I NDFTP+EEE+IR+EN+W Sbjct: 137 IKNDFTPEEEEQIRKENEW 155
>Q71U00:SKP1_XENLA S-phase kinase-associated protein 1A - Xenopus laevis (African| clawed frog) Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q6PEC4:SKP1_RAT S-phase kinase-associated protein 1A - Rattus norvegicus (Rat)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q5R512:SKP1_PONPY S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q9WTX5:SKP1_MOUSE S-phase kinase-associated protein 1A - Mus musculus (Mouse)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q4R5B9:SKP1_MACFA S-phase kinase-associated protein 1A - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>P63208:SKP1_HUMAN S-phase kinase-associated protein 1A - Homo sapiens (Human)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q5ZKF5:SKP1_CHICK S-phase kinase-associated protein 1A - Gallus gallus (Chicken)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>P63209:SKP1_CAVPO S-phase kinase-associated protein 1A - Cavia porcellus (Guinea pig)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q3ZCF3:SKP1_BOVIN S-phase kinase-associated protein 1A - Bos taurus (Bovine)| Length = 163 Score = 137 bits (345), Expect = 6e-32 Identities = 72/133 (54%), Positives = 93/133 (69%) Frame = +3 Query: 207 VDDGCADNIIPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 +DD D+ +PLPNV+A IL KVI +C H + D++ + +D Sbjct: 36 MDDEGDDDPVPLPNVNAAILKKVIQWCTHH----KDDPPPPEDDENKEKRTDDIPV--WD 89 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 + F+KVDQ LF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNI NDFT +E Sbjct: 90 QEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 149 Query: 567 EEEIRRENQWAFE 605 E ++R+ENQW E Sbjct: 150 EAQVRKENQWCEE 162
>Q9Y709:SKP1_SCHPO Suppressor of kinetochore protein 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 161 Score = 130 bits (326), Expect = 9e-30 Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 1/136 (0%) Frame = +3 Query: 195 IKHLVDDGCADNI-IPLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVN 371 IK++++D N+ IPLPNVS+N+L KV+++C+ H N D Sbjct: 27 IKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHK-NDLYSGTEEESDIRLKKSTD--- 82 Query: 372 LKAFDEHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVND 551 + +D F+ VDQ +LF+++LA+NYL+IK LLD C+TVA+MI+GK+PE+IRKTFNI ND Sbjct: 83 IDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPND 142 Query: 552 FTPQEEEEIRRENQWA 599 FTP+EEE+IR+EN+WA Sbjct: 143 FTPEEEEQIRKENEWA 158
>P52286:SKP1_YEAST Suppressor of kinetochore protein 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 194 Score = 119 bits (299), Expect = 1e-26 Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 1/131 (0%) Frame = +3 Query: 210 DDGCADNII-PLPNVSANILIKVIDYCKQHVLNGXXXXXXXXXXXXXXVKPDEVNLKAFD 386 DD D I+ P+PNV +++L KVI++ + H + V ++D Sbjct: 68 DDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVD-------SWD 120 Query: 387 EHFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQE 566 F+KVDQ +L+++ILAANYL IK LLD C+ VA+MI+G++PEEIR+TFNIVNDFTP+E Sbjct: 121 REFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEE 180 Query: 567 EEEIRRENQWA 599 E IRREN+WA Sbjct: 181 EAAIRRENEWA 191
>Q1A1A2:FOXG1_EQUBU Forkhead box protein G1 - Equus burchelli (Plains zebra) (Equus| quagga) Length = 488 Score = 34.7 bits (78), Expect = 0.52 Identities = 19/78 (24%), Positives = 31/78 (39%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESEPTYIFPTSLVSEPQN 685 +QN+ H S H+ Q ++HH+ PP PP+ +P P +P Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQPP---PPPQAPQPSQ 84 Query: 684 VNGCSQAFNEATFPSLLV 631 G A ++ LL+ Sbjct: 85 ARGVPAADDDKGPQQLLL 102
>Q1A1A5:FOXG1_CERPY Forkhead box protein G1 - Cercopithecus pygerythrus (Vervet monkey)| Length = 489 Score = 33.9 bits (76), Expect = 0.89 Identities = 16/59 (27%), Positives = 24/59 (40%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESEPTYIFPTSLVSEPQ 688 +QN+ H S H+ Q ++HH+ PP PP+ +P P PQ Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQPPPPPPPPAPQPPQ 86
>Q9S3Q2:HTPG_PORGI Chaperone protein htpG - Porphyromonas gingivalis (Bacteroides| gingivalis) Length = 684 Score = 32.3 bits (72), Expect = 2.6 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +3 Query: 390 HFVKVDQTVLFDLILAANYLEIKGLLDLTCQTVADMIKGKTPEEIRKTFNIVNDFTPQEE 569 HFV+VD + +LI E+K L D T+ + + + P + +K FN+ + E Sbjct: 471 HFVRVDSDTINNLIRKEERAEVK-LSDTERATLVKLFEARLPRDEKKHFNVAFESLGAEG 529 Query: 570 EEI 578 E I Sbjct: 530 EAI 532
>P02719:SCNA_ELEEL Sodium channel protein - Electrophorus electricus (Electric eel)| Length = 1820 Score = 31.6 bits (70), Expect = 4.4 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = -1 Query: 542 DVEGLADLLRSLALD--HVGDRLTGQVEEP-LDLQVVRSQDEVEEDRLVD 402 D EG D L LD + D +T VE P L+L +V+ + E+EE+ LVD Sbjct: 855 DNEGKKDTLPLNYLDGEKIVDGITNCVESPTLNLPIVKGESEIEEEGLVD 904
>P55316:FOXG1_HUMAN Forkhead box protein G1 - Homo sapiens (Human)| Length = 489 Score = 30.8 bits (68), Expect = 7.5 Identities = 15/59 (25%), Positives = 23/59 (38%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESEPTYIFPTSLVSEPQ 688 +QN+ H S H+ Q ++HH+ PP PP+ + P PQ Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQ 86
>Q1A1A6:FOXG1_CEBCA Forkhead box protein G1 - Cebus capucinus (White-faced sapajou)| Length = 489 Score = 30.8 bits (68), Expect = 7.5 Identities = 15/59 (25%), Positives = 23/59 (38%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESEPTYIFPTSLVSEPQ 688 +QN+ H S H+ Q ++HH+ PP PP+ + P PQ Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPPPAPQPPQ 86
>P49216:RS26_ORYSJ 40S ribosomal protein S26 - Oryza sativa subsp. japonica (Rice)| Length = 133 Score = 30.4 bits (67), Expect = 9.8 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +2 Query: 371 PQGLRRALRQSRPDGPLRPHPGCELPGDQGAPRPDLS 481 P+ RR R+ RP GP RP G PG AP P+++ Sbjct: 98 PERFRR--REDRPQGP-RPGGGAPAPGGAAAPAPNVA 131
>Q00939:FOXG1_RAT Forkhead box protein G1 - Rattus norvegicus (Rat)| Length = 480 Score = 30.4 bits (67), Expect = 9.8 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESE 730 +QN+ H S H+ Q ++HH+ + PP PP+ + Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQQQ 72
>Q60987:FOXG1_MOUSE Forkhead box protein G1 - Mus musculus (Mouse)| Length = 481 Score = 30.4 bits (67), Expect = 9.8 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESE 730 +QN+ H S H+ Q ++HH+ + PP PP+ + Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPPQQQ 72
>Q1A1A3:FOXG1_EPOGA Forkhead box protein G1 - Epomophorus gambianus (Gambian epauletted| fruit bat) Length = 485 Score = 30.4 bits (67), Expect = 9.8 Identities = 18/78 (23%), Positives = 30/78 (38%) Frame = -3 Query: 864 LQNNQHTISFPHNQVPRVQQNYHHNQKERVVSQNGKDPPDPPESEPTYIFPTSLVSEPQN 685 +QN+ H S H+ Q ++HH+ + PP P + P P +P Sbjct: 28 VQNDNHHASHGHHNSHHPQHHHHHHHHHHPPPPAPQPPPPPQQQPP----PPPQAPQPPQ 83 Query: 684 VNGCSQAFNEATFPSLLV 631 G A ++ LL+ Sbjct: 84 ARGAPAADDDKGPQQLLL 101 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 107,259,363 Number of extensions: 2160496 Number of successful extensions: 7546 Number of sequences better than 10.0: 24 Number of HSP's gapped: 7492 Number of HSP's successfully gapped: 24 Length of query: 293 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 181 Effective length of database: 69,965,399 Effective search space: 12663737219 Effective search space used: 12663737219 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
