>LOC_Os04g41040:12004.t03665:unspliced-genomic DNA-directed RNA polymerases II 24 kDa polypeptide, putative,|
expressed
Length = 3031
Score = 92.3 bits (195), Expect(5) = 2e-46
Identities = 37/47 (78%), Positives = 41/47 (87%)
Frame = +3 / +1
Query: 603 QLPRIQLTDPVARYYGMKRGQVVKITRKSEVAGEYETYRYVI*ASQH 743
QLPRIQ+TDP+ARYYGMKRGQVVKI R SE AG Y TYRYV+*+S H
Sbjct: 2512 QLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYVV*SSLH 2652
Score = 84.5 bits (178), Expect(5) = 2e-46
Identities = 40/91 (43%), Positives = 54/91 (59%)
Frame = +3 / +2
Query: 60 SPHRSWRKTSRXXXXXXXXMASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFV 239
SPH++ K MAS+ + RLFR+RRTV+QMLRDRGYLV + +I L +FV
Sbjct: 92 SPHKTLAKPRGGGGRERR*MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFV 271
Query: 240 QRYGDSVRRDEIVIHCEKDGDPNDKVDVFFL 332
R+GD V RD +V K + D+V + L
Sbjct: 272 ARFGDPVDRDHLVFSRHKKDNGADQVRLLLL 364
Score = 40.9 bits (83), Expect(5) = 2e-46
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / +2
Query: 362 QELRRQDEAAERHQWHTHLAEGAERPRPDR 451
QELR +DEA ER Q H A GA+R RP R
Sbjct: 530 QELRGEDEAGERVQRHPRRAAGAQRVRPQR 619
Score = 29.9 bits (59), Expect(5) = 2e-46
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 489 QEGELLVNITEHHLVP 536
QE ELLVNI +H LVP
Sbjct: 763 QEAELLVNIKDHTLVP 810
Score = 26.3 bits (51), Expect(5) = 2e-46
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 467 EVPPRGLPG 493
EVPPRGLPG
Sbjct: 638 EVPPRGLPG 664
Score = 60.6 bits (126), Expect(5) = 2e-30
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -2 / -3
Query: 745 ECCEAQMT*R*VSYSPATSLFRVIFTTCPRFMP*YLA 635
+C E T*R V+Y PA SL R+IFTTCPRFMP*YLA
Sbjct: 2654 KCSEDHTT*RYVTYLPAVSLARMIFTTCPRFMP*YLA 2544
Score = 50.1 bits (103), Expect(5) = 2e-30
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = -2 / -2
Query: 331 RKKTSTLSFGSPSFSQWMTISSRRTESPYRWTNSYRDSLISSSFTRYPRSRSICNTVRRT 152
R+++ T S + T SR T SP R T S +S+S TR P SRSIC TVRR
Sbjct: 363 RRRSRTWSAPLSFLWRLKTRWSRSTGSPKRATKSPLGRSMSNSVTR*PLSRSICITVRRM 184
Query: 151 RNSRLL 134
R SRL+
Sbjct: 183 RKSRLV 166
Score = 46.4 bits (95), Expect(5) = 2e-30
Identities = 24/45 (53%), Positives = 26/45 (57%)
Frame = -2 / -1
Query: 454 TSVRAGPLSAFCKMSMPLVTFCCFILSTQLLTTPKPVLDSSRKKT 320
T++RA LSA C MPL T CFILST LL P S KKT
Sbjct: 622 TALRANALSACCTTRMPLNTLSCFILST*LLIVFTPGFASLGKKT 488
Score = 35.4 bits (71), Expect(5) = 2e-30
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3 / -1
Query: 576 AAPSSPRHSGARAWERDGVP*CSQEAPLPGR 484
AA SS + SGARA + P*CSQ PLP +
Sbjct: 850 AASSSAQASGARALAQGYDP*CSQAVPLPAQ 758
Score = 26.3 bits (51), Expect(5) = 2e-30
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 492 PGRPRGGTS 466
PGRPRGGTS
Sbjct: 663 PGRPRGGTS 637
Score = 60.6 bits (126), Expect(3) = 3e-20
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +2 / +3
Query: 590 CPRNSAPQDSAHGSGGKILRHEAWAGGEDHPEERSRRRI*DLPLRHLSLTTF 745
C N+AP DS +G KILRHEAWA +DHP R +I D+PL + TTF
Sbjct: 2499 CIMNAAPPDSNYGPNSKILRHEAWASCKDHPC**DRWKICDVPLCGVIFTTF 2654
Score = 59.7 bits (124), Expect(3) = 3e-20
Identities = 24/53 (45%), Positives = 40/53 (75%)
Frame = +3 / +3
Query: 303 PNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQ 461
P+ ++ VFF ++K G+ +RS V++MKQ++V NGIL++Q+ALS AR+ V +
Sbjct: 471 PSSQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQE 629
Score = 24.4 bits (47), Expect(3) = 3e-20
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 137 QAAVPRAAHGVADAARPRVPGEG 205
+ A P HG ADAA +P +G
Sbjct: 169 EPAFPHPPHGDADAAGQGLPRDG 237
Score = 52.8 bits (109), Expect(3) = 2e-14
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = -1 / -2
Query: 731 SDDVAVGLIFSGDFALPGDLHHLPTLHAVVSCHRIRELNPGEL 603
S + V I S DL++LPTLHAV+SC+ +R LNPGEL
Sbjct: 2640 SHHITVRHISSSGLTSTDDLYNLPTLHAVISCYWVRNLNPGEL 2512
Score = 41.4 bits (84), Expect(3) = 2e-14
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1 / -1
Query: 239 DELVQGQLDFVVLHQVPAVSQHLQHRAPHAEQPLVVPVGRH 117
DE+ ++D + H+V V QHL HRA AE+P + + RH
Sbjct: 271 DEVAPREVDVQLRHEVAPVPQHLHHRAADAEKPARLLLRRH 149
Score = 30.9 bits (61), Expect(3) = 2e-14
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / -3
Query: 431 QRLLQDEYAIGDVLLLHLVDAAPD 360
+RLL DE A+ LLLH + APD
Sbjct: 599 ERLLHDEDAVEHALLLHPLHVAPD 528
Score = 38.2 bits (77), Expect = 0.10
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1 / +2
Query: 604 SSPGFSSRIRWQDTTA*SVGRW*RSPGRAKSPENMRPTATSSEPHNIPK 750
SSPGF R + QD TA*SVG+ *RS + E+M T + H I +
Sbjct: 2513 SSPGFKLRTQ*QDITA*SVGKL*RSSVLVRPLEDM*RTVMWCDLHYISR 2659
>LOC_Os01g59140:12001.t05304:unspliced-genomic DNA-directed RNA polymerases II 24 kDa polypeptide, putative,|
expressed
Length = 2865
Score = 82.2 bits (173), Expect(3) = 5e-33
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3 / +1
Query: 606 LPRIQLTDPVARYYGMKRGQVVKITRKSEVAGEYETYRYVI* 731
LPRIQ+TDP+ARYYG++RGQVVKI R SE AG Y TYRYV+*
Sbjct: 2278 LPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYVV* 2403
Score = 77.1 bits (162), Expect(3) = 5e-33
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +3 / +1
Query: 141 RLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKV 317
RL R+RRTV+QMLRDRGYLV + E+ + +F+++YG+S R++++I+ K DP+D+V
Sbjct: 157 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQV 333
Score = 29.0 bits (57), Expect(3) = 5e-33
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 486 FQEGELLVNITEHHLVP 536
F E ELL+NI EH LVP
Sbjct: 1377 F*EAELLINIKEHVLVP 1427
Score = 53.3 bits (110), Expect(3) = 1e-13
Identities = 31/59 (52%), Positives = 32/59 (54%)
Frame = -2 / -2
Query: 316 TLSFGSPSFSQWMTISSRRTESPYRWTNSYRDSLISSSFTRYPRSRSICNTVRRTRNSR 140
T S GS M SSR +SPY S R S S TRYP SRSIC TVRR R SR
Sbjct: 332 TWSEGSFFLYLLMRRSSRWKDSPYLRRKSRRPMASSCSTTRYPLSRSICITVRRIRTSR 156
Score = 46.4 bits (95), Expect(3) = 1e-13
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -2 / -2
Query: 724 T*R*VSYSPATSLFRVIFTTCPRFMP*YLA 635
T*R V+Y PA SL +IFTTCPR P*YLA
Sbjct: 2396 T*RYVTYLPAVSLGLMIFTTCPRLRP*YLA 2307
Score = 22.1 bits (42), Expect(3) = 1e-13
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2 / -3
Query: 535 GTRWCSVMFTRSSPSWK 485
GTR CS++F +S S K
Sbjct: 1426 GTRTCSLIFISNSAS*K 1376
Score = 40.0 bits (81), Expect(2) = 5e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1 / -1
Query: 239 DELVQGQLDFVVLHQVPAVSQHLQHRAPHAEQP 141
+E+ + V+ HQVP+V QHL HR P QP
Sbjct: 255 EEVAAAHGELVLHHQVPSVPQHLHHRPPDPHQP 157
Score = 35.4 bits (71), Expect(2) = 5e-06
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1 / -1
Query: 725 DVAVGLIFSGDFALPGDLHHLPTLHAVVSCHRIREL 618
++ + I +G A P DLH+L + A+V C+R+R L
Sbjct: 2397 NITICNISAGCLAGPDDLHNLSSSEAIVPCNRVRNL 2290
>LOC_Os12g04510:12012.t00340:unspliced-genomic DNA-directed RNA polymerase II 23 kDa polypeptide, putative,|
expressed
Length = 2822
Score = 52.4 bits (108), Expect(4) = 5e-19
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +3 / +3
Query: 603 QLPRIQLTDPVARYYGMKRGQVVKITRKSEVAGEYETYRYVI* 731
QLPR+ TD VARYYG +G VVK+T E+ G+ YR V *
Sbjct: 2439 QLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF* 2567
Score = 48.3 bits (99), Expect(4) = 5e-19
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3 / +3
Query: 132 DNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPND 311
++ RLF RRT ++MLRDRGY V + EI +L EF + + + + DP+
Sbjct: 459 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 638
Query: 312 KV 317
KV
Sbjct: 639 KV 644
Score = 36.3 bits (73), Expect(4) = 5e-19
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +3 / +2
Query: 312 KVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKYRLEVFQ 491
+V + F + +R + K++N++ +LILQ + AR + + K+++++FQ
Sbjct: 1382 QVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQ 1561
Score = 23.1 bits (44), Expect(4) = 5e-19
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 498 ELLVNITEHHLVP 536
+LLVNIT+H L P
Sbjct: 1800 DLLVNITKHVLKP 1838
Score = 41.4 bits (84), Expect = 0.011
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = -2 / -2
Query: 253 SPYRWTNSYRDSLISSSFTRYPRSRSICNTVRRTRNSRLL 134
S + NS R IS+S T YPRSRSI VRR RN R L
Sbjct: 580 SAHHARNSGRVRAISASGTLYPRSRSISIAVRRARNRRWL 461
Score = 35.4 bits (71), Expect = 0.67
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1 / -1
Query: 245 PLDELVQGQLDFVVLHQVPAVSQHLQHRAPHAEQPLVV 132
P EL +G D + H VPAV++HL RA EQ + +
Sbjct: 572 PCAELREGAGDLGLRHAVPAVAEHLHCRAARQEQAVAL 459
>LOC_Os11g04730:12011.t00366:unspliced-genomic DNA-directed RNA polymerase II 23 kDa polypeptide, putative,|
expressed
Length = 2548
Score = 49.6 bits (102), Expect(4) = 2e-18
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +3 / +3
Query: 603 QLPRIQLTDPVARYYGMKRGQVVKITRKSEVAGEYETYRYVI* 731
QLPR+ TD VARYYG +G VVK+ E+ G+ YR V *
Sbjct: 2061 QLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF* 2189
Score = 48.3 bits (99), Expect(4) = 2e-18
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3 / +1
Query: 132 DNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPND 311
++ RLF RRT ++MLRDRGY V + EI +L EF + + + + DP+
Sbjct: 85 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 264
Query: 312 KV 317
KV
Sbjct: 265 KV 270
Score = 36.8 bits (74), Expect(4) = 2e-18
Identities = 16/68 (23%), Positives = 36/68 (52%)
Frame = +3 / +1
Query: 312 KVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKYRLEVFQ 491
+V + F + +R + K++N++ +LILQ + AR + + K+++++FQ
Sbjct: 1009 QVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQ 1188
Query: 492 EGELLVNI 515
LV++
Sbjct: 1189 VCFCLVSM 1212
Score = 23.1 bits (44), Expect(4) = 2e-18
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3 / +1
Query: 498 ELLVNITEHHLVP 536
+LLVNIT+H L P
Sbjct: 1426 DLLVNITKHVLKP 1464
Score = 41.8 bits (85), Expect = 0.008
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = -2 / -3
Query: 253 SPYRWTNSYRDSLISSSFTRYPRSRSICNTVRRTRNSRLL 134
S ++ NS R IS+S T YPRSRSI VRR RN R L
Sbjct: 206 SAHQARNSGRVRAISASGTLYPRSRSISIAVRRARNRRWL 87
Score = 33.1 bits (66), Expect = 3.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1 / -2
Query: 245 PLDELVQGQLDFVVLHQVPAVSQHLQHRAPHAEQPLVV 132
P EL +G D + H VPAV++HL R EQ + +
Sbjct: 198 PGAELREGAGDLGLRHAVPAVAEHLHRRPARQEQAVAL 85
>LOC_Os02g41630:12002.t03749:unspliced-genomic phenylalanine ammonia-lyase, putative, expressed|
Length = 6620
Score = 36.3 bits (73), Expect(2) = 0.090
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = +2 / +3
Query: 395 RHQWHTHLAEGAERPRPDRGLTEQEVPPRGLPGRGASCEHYGTPSR 532
RHQ H + ER DR Q P R LPG C H PSR
Sbjct: 2523 RHQVHRARGQLRERQPGDRRPPRQGAPRRQLPGHPHRCVHGQRPSR 2660
Score = 25.4 bits (49), Expect(2) = 0.090
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1 / +2
Query: 673 RSPGRAKSPENMRPTATSSEPHNIPKA 753
R PGR++ P + PTA P +A
Sbjct: 3296 RCPGRSRPPASPSPTAPPPSPTGSSRA 3376
>LOC_Os07g36740:12007.t03343:unspliced-genomic CSLF4 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase|
Length = 6052
Score = 30.4 bits (60), Expect(2) = 0.16
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2 / +3
Query: 538 LGTRWCSVMFTRSSPSWKTSR 476
L TRW S +T SP W TSR
Sbjct: 4452 LTTRWTSAAWTCGSPCWCTSR 4514
Score = 24.4 bits (47), Expect(2) = 0.16
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -2 / +3
Query: 376 STQLLTTPKPVLDSSRKKTSTLSFGSPSFSQWMTISSRRTESPYRWTNSYRDSLISSS 203
ST TT S ++ ++ S G+ + + W + SSR + R + SSS
Sbjct: 4611 STSTATTTSTTRRRSVRRCASCSTGAAAATTWRSSSSRSGSTTSTRRTGTRTTTASSS 4784
>LOC_Os01g60430:12001.t05424:unspliced-genomic pentatricopeptide repeat-containing protein, putative, expressed|
Length = 2403
Score = 28.1 bits (55), Expect(2) = 0.23
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2 / -1
Query: 587 HCPRNSAPQDSAHGSGGKILRHEAWAGGEDHPEERSRR 700
H N A + A + ++ RHEA G E RSRR
Sbjct: 678 HLLENLAGKGGAAAAAARVDRHEAVGHGSVRGEPRSRR 565
Score = 26.3 bits (51), Expect(2) = 0.23
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRGASCEHYGTPSRSQ 538
A R R R + + VPPR LPG + P R +
Sbjct: 847 ARRRRGRRRASRRPVPPRRLPGHACAGTARRPPRRGR 737
Score = 32.2 bits (64), Expect = 6.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3 / -3
Query: 195 GTRGLAASATPCAARGTAACCPRRT 121
G RG PCA RG + C P R+
Sbjct: 151 GRRGGGGQGPPCAGRGASGCAPARS 77
>LOC_Os09g29820:12009.t02660:unspliced-genomic BZIP family transcription factor, putative, expressed|
Length = 886
Score = 24.4 bits (47), Expect(3) = 0.24
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 337 SSRKKTSTLSFGSPSFSQWMTI 272
SS +S LSF S +FSQW ++
Sbjct: 560 SSLVWSSALSFLSRAFSQWTSL 495
Score = 23.5 bits (45), Expect(3) = 0.24
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1 / -2
Query: 155 HAEQPLVVPVGRHP 114
HA P +PVG HP
Sbjct: 393 HARPPCRLPVGDHP 352
Score = 22.1 bits (42), Expect(3) = 0.24
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2 / -3
Query: 283 WMTISSRRTESPYRWTNSYRDSL 215
W++ S RR + RWT SL
Sbjct: 479 WLSSSRRRRLASRRWTTCPLSSL 411
>LOC_Os03g11670:12003.t00968:unspliced-genomic salt-inducible protein, putative, expressed|
Length = 2276
Score = 27.6 bits (54), Expect(2) = 1.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2 / +1
Query: 374 RQDEAAERHQWHTHLAEGAERPRPDRGLTEQEVPPRGLPGR 496
R+D H H+ G R RP RG + P R P R
Sbjct: 649 REDAGLRVLAGHAHVLGGDRRVRPRRGRRDGPPPVRPRPRR 771
Score = 24.4 bits (47), Expect(2) = 1.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2 / +1
Query: 596 RNSAPQDSAHGSGGKILRHEAWAGGEDHPEERSR 697
R A G+ +A GGEDHP+ S+
Sbjct: 877 RRQAKPGRVQHGAGRHGPRDAAVGGEDHPQGASQ 978
>LOC_Os11g41870:12011.t03720:unspliced-genomic galactose-proton symporter, putative, expressed|
Length = 5168
Score = 30.9 bits (61), Expect(2) = 1.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2 / -1
Query: 593 PRNSAPQDSAHGSGGKILRHEAWAGGEDHPEERSRRR 703
PR S P+ +A GG+ R AW G R RRR
Sbjct: 4559 PRPSPPRSTAAAGGGRRGRRGAWRRGWSTS*RRPRRR 4449
Score = 25.8 bits (50), Expect(2) = 1.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2 / -2
Query: 374 RQDEAAERHQWHTHLAEGAERPRPDR 451
R + A RH H H A RP+P R
Sbjct: 4789 RHAQHAARHPVHRHADARALRPQPQR 4712
>LOC_Os03g47590:12003.t04120:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3238
Score = 28.6 bits (56), Expect(3) = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRG 499
A RPRP RG + PR GRG
Sbjct: 1700 AARPRPRRGWPRKSSSPRAESGRG 1629
Score = 24.0 bits (46), Expect(3) = 2.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 149 PRAAHGVADAARPRVPGEG 205
PRA G A +RP + G G
Sbjct: 2945 PRAPRGAAGGSRPSLRGAG 2889
Score = 22.6 bits (43), Expect(3) = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1 / -1
Query: 661 GRW*RSPGRAKSPENMRPTATSSEP 735
G * SPG A+SP + ++S+ P
Sbjct: 1231 GAR*DSPGMARSPPSCGAASSSAPP 1157
>LOC_Os01g56530:12001.t05062:unspliced-genomic LOB domain protein 17, putative, expressed|
Length = 1084
Score = 30.4 bits (60), Expect(2) = 2.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3 / +3
Query: 168 TPCAARGTAACCPRRTP 118
TP R T++CC RRTP
Sbjct: 711 TPTRRRSTSSCCSRRTP 761
Score = 24.0 bits (46), Expect(2) = 2.1
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3 / +2
Query: 651 CRSILPPDP*AESWGAEFRGQCISAAAPSSPRHSGARA 538
C D A WG G+ SAA SSP +G A
Sbjct: 197 CSRRTSADAAAAGWGRA*EGEGGSAARRSSPPCTGCSA 310
>LOC_Os10g22370:12010.t01720:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 5568
Score = 29.5 bits (58), Expect(2) = 2.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3 / +2
Query: 201 SPGTRGLAASATPCAARGTAACCPRRTPSLLRLRC 97
S G RG AS TPC+ R + C R S RC
Sbjct: 593 SAGWRGTGASPTPCSTRR*STRCAIREGSPRPPRC 697
Score = 26.7 bits (52), Expect(2) = 2.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3 / +3
Query: 582 SAAAPSSPRHSGARAWERDG 523
+ A P PR GARA RDG
Sbjct: 546 AGALPPRPRRRGARAAPRDG 605
>LOC_Os04g20340:12004.t01772:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 2491
Score = 30.9 bits (61), Expect(2) = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRG 499
A RPRP RG T + PR GRG
Sbjct: 1049 AVRPRPRRGRTRKSSSPRAESGRG 978
Score = 24.0 bits (46), Expect(2) = 3.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 149 PRAAHGVADAARPRVPGEG 205
PRA G A +RP + G G
Sbjct: 2198 PRAPRGAAGGSRPSLRGAG 2142
>LOC_Os05g41100:12005.t03649:unspliced-genomic zz domain protein, putative, expressed|
Length = 2292
Score = 28.1 bits (55), Expect(2) = 5.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3 / -3
Query: 198 PGTRGLAASATPCAARGTAACCPR 127
P RG ++ A P AA AACC R
Sbjct: 268 PAGRGPSSCAPPGAAAPPAACCAR 197
Score = 25.8 bits (50), Expect(2) = 5.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / -3
Query: 591 QCISAAAPSSPRH 553
Q +SA +PSSPRH
Sbjct: 793 QSVSAQSPSSPRH 755
>LOC_Os03g47810:12003.t04143:unspliced-genomic nitrate and chloride transporter, putative, expressed|
Length = 3463
Score = 30.4 bits (60), Expect(2) = 5.8
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -2 / +2
Query: 319 STLSFGSPSFSQWMTISSRRTESPYRWTNSYRDSLISSSFTRYPRSRSICNTVRRTR 149
ST S + S S+W SRRT SP ++S S SSS ++ S RR R
Sbjct: 734 STSSS*TSSSSRWSASPSRRTTSPPPSSSSSSSSPSSSSSSKNSTPTSSLRRRRRRR 904
Score = 24.0 bits (46), Expect(2) = 5.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2 / +2
Query: 505 RSSPSWKTSRRYFLLCETSVRAGPLSA 425
RSSP +TSRR C RA SA
Sbjct: 431 RSSPPSRTSRRTAASCWGCSRASSASA 511
>LOC_Os11g32580:12011.t02854:unspliced-genomic chalcone synthase 3, putative, expressed|
Length = 1755
Score = 26.3 bits (51), Expect(3) = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2 / +3
Query: 331 RKKTSTLSFGSPSFSQWMTISSR 263
R+ TST + GSP + W T+ R
Sbjct: 159 RRSTSTGTSGSPRATTWSTLKPR 227
Score = 22.6 bits (43), Expect(3) = 7.0
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3 / +1
Query: 147 TAACCPRRTP 118
++ CCPRR P
Sbjct: 1006 SSTCCPRRRP 1035
Score = 22.6 bits (43), Expect(3) = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2 / +2
Query: 91 REVFRQDRWGEAAPARMA*GRCGGGLG 11
R+ R R APA GR GGG+G
Sbjct: 1331 RDHLRPRRAATPAPAAGWWGRRGGGVG 1411
>LOC_Os03g13910:12003.t01184:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3136
Score = 30.4 bits (60), Expect(2) = 7.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRGASCEH 514
A RPRP RG + PR GRG H
Sbjct: 1694 AVRPRPRRGWLRKSSSPRAESGRGLGSPH 1608
Score = 23.5 bits (45), Expect(2) = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 149 PRAAHGVADAARPRVPGEG 205
PRA G A +RP + G G
Sbjct: 2843 PRAPRGAAGESRPSLRGAG 2787
>LOC_Os03g01070:12003.t00007:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3135
Score = 29.9 bits (59), Expect(2) = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRG 499
A RPRP RG + + PR GRG
Sbjct: 1693 AARPRPRRGWPRKSLSPRAESGRG 1622
Score = 24.0 bits (46), Expect(2) = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 149 PRAAHGVADAARPRVPGEG 205
PRA G A +RP + G G
Sbjct: 2842 PRAPRGAAGGSRPSLRGAG 2786
>LOC_Os01g61650:12001.t05543:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3137
Score = 29.9 bits (59), Expect(2) = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2 / -3
Query: 428 AERPRPDRGLTEQEVPPRGLPGRG 499
A RPRP RG + + PR GRG
Sbjct: 1695 AARPRPRRGWPRKSLSPRAESGRG 1624
Score = 24.0 bits (46), Expect(2) = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 149 PRAAHGVADAARPRVPGEG 205
PRA G A +RP + G G
Sbjct: 2844 PRAPRGAAGGSRPSLRGAG 2788
>LOC_Os06g41030:12006.t03798:unspliced-genomic secreted protein, putative, expressed|
Length = 5158
Score = 27.2 bits (53), Expect(2) = 8.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2 / +1
Query: 392 ERHQWHTHLAEGAERPR 442
+ HQWH HL + PR
Sbjct: 3136 QEHQWHAHLWPTPQEPR 3186
Score = 27.2 bits (53), Expect(2) = 8.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +2
Query: 650 HEAWAGGEDHPEERSRRRI 706
H GGE HP R RRR+
Sbjct: 4133 HPRRLGGERHPRRRRRRRL 4189
>LOC_Os05g42250:12005.t03761:unspliced-genomic cyclic nucleotide-gated ion channel 2, putative, expressed|
Length = 4637
Score = 26.7 bits (52), Expect(3) = 8.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2 / +2
Query: 337 SSRKKTSTLSFGSPSFSQWMTISSR 263
SS ST S SPS + W T SSR
Sbjct: 3302 SSTTSASTSSARSPSSTTWTTSSSR 3376
Score = 23.5 bits (45), Expect(3) = 8.5
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2 / +2
Query: 418 KMSMPLVTFCCFI 380
K+ +PL++FC F+
Sbjct: 2948 KIHLPLISFCMFV 2986
Score = 23.5 bits (45), Expect(3) = 8.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3 / +3
Query: 192 TRGLAASATPCAARGTAACCPRRTP 118
T G +PC++RG RR+P
Sbjct: 4170 TGGGRGRPSPCSSRGGGTSTARRSP 4244
>LOC_Os01g01520:12001.t00050:unspliced-genomic anthranilate N-benzoyltransferase protein 1, putative, expressed|
Length = 4939
Score = 25.4 bits (49), Expect(3) = 9.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 252 DSVRRDEIVIHCEKDG 299
DSVRRD + CEK G
Sbjct: 1670 DSVRRDRL*FLCEKKG 1717
Score = 24.4 bits (47), Expect(3) = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1 / +3
Query: 676 SPGRAKSPENMRPTATSS 729
+PG + SP RPT SS
Sbjct: 4137 APGSSPSPRRPRPTCASS 4190
Score = 24.0 bits (46), Expect(3) = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3 / +2
Query: 57 ASPHRSWRK 83
A PH+SWRK
Sbjct: 473 AKPHKSWRK 499
>LOC_Os04g44030:12004.t03943:unspliced-genomic expressed protein|
Length = 3126
Score = 29.0 bits (57), Expect(2) = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3 / +1
Query: 159 AARGTAACCPRRTPSLLRL 103
A+ GT A CPR TPS RL
Sbjct: 742 ASAGTPATCPRTTPSSPRL 798
Score = 24.4 bits (47), Expect(2) = 9.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3 / +1
Query: 633 PDP*AESWGAEFRGQCISAAAPSSPRHSGARAWER 529
P + SWG+ + S + PSSP + RA R
Sbjct: 502 PSRPSTSWGSTAWSRTPSPSTPSSPPCAAGRAARR 606
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 312,192,954
Number of extensions: 4530442
Number of successful extensions: 31584
Number of sequences better than 10.0: 82
Length of query: 346
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 296
Effective length of database: 52,799,986
Effective search space: 15628795856
Effective search space used: 15628795856
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)