>Q80UW8:RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 - Mus|
           musculus (Mouse)
          Length = 210
 Score =  164 bits (414), Expect = 7e-40
 Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 6/209 (2%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSV-----RRDEIVI 281
           M  + +  RL+++R+T++Q+  DRGYLV  DE+  +L EF  ++GD       RR ++ +
Sbjct: 1   MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60

Query: 282 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTE-VS 458
               + DP D++ VFF +E K G+  ++    +M+++N+T  ++++Q+ ++  A+   V 
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120

Query: 459 QSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVA 638
            + KY LE F + ELL+NITEH LVP                Y   E+QLPRIQ  DPVA
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA 180

Query: 639 RYYGMKRGQVVKITRKSEVAGEYETYRYV 725
           RY+G+KRGQVVKI R SE AG Y TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209

>Q9N5K2:RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Caenorhabditis elegans
          Length = 211

 Score =  163 bits (413), Expect = 9e-40
 Identities = 89/211 (42%), Positives = 128/211 (60%), Gaps = 7/211 (3%)
 Frame = +3

Query: 117 MASDG-DNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGD-----SVRRDEIV 278
           MA D  +  RL+R+R+TVLQM+ DRGYLV  DE+   L  F  +YGD        R ++ 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 279 IHCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVS 458
           I    + DP D++ VFF +++K G+  +++   +M++QN++  I+++Q  ++  A+  + 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 459 Q-SKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPV 635
             + KY LE F E EL+VNITEH LVP                Y   ++QLPRIQ  DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180

Query: 636 ARYYGMKRGQVVKITRKSEVAGEYETYRYVI 728
           ARY+G++RGQVVKI R SE AG Y TYR V+
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

>Q5R587:RPAB1_PONPY DNA-directed RNA polymerases I, II, and III subunit RPABC1 - Pongo|
           pygmaeus (Orangutan)
          Length = 210

 Score =  163 bits (412), Expect = 1e-39
 Identities = 85/209 (40%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSV-----RRDEIVI 281
           M  + +  RL+++R+T++Q+  DRGYLV  DE+  +L EF  ++GD       RR ++ +
Sbjct: 1   MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTV 60

Query: 282 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTE-VS 458
               + DP D++ VFF +E K G+  ++    +M+++N+T  ++++Q+ ++  A+   V 
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120

Query: 459 QSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVA 638
            + KY LE F + ELL+NITEH LVP                Y   E QLPRIQ  DPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180

Query: 639 RYYGMKRGQVVKITRKSEVAGEYETYRYV 725
           RY+G+KRGQVVKI R SE AG Y TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209

>P19388:RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 - Homo|
           sapiens (Human)
          Length = 210

 Score =  161 bits (408), Expect = 4e-39
 Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 6/209 (2%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSV-----RRDEIVI 281
           M  + +  RL+++R+T++Q+  DRGYLV  DE+  +L EF  + GD       RR ++ +
Sbjct: 1   MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60

Query: 282 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTE-VS 458
               + DP D++ VFF +E K G+  ++    +M+++N+T  ++++Q+ ++  A+   V 
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120

Query: 459 QSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVA 638
            + KY LE F + ELL+NITEH LVP                Y   E QLPRIQ  DPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180

Query: 639 RYYGMKRGQVVKITRKSEVAGEYETYRYV 725
           RY+G+KRGQVVKI R SE AG Y TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209

>Q2T9T3:RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 - Bos|
           taurus (Bovine)
          Length = 210

 Score =  158 bits (399), Expect = 4e-38
 Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 6/209 (2%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSV-----RRDEIVI 281
           M  + +  RL+++R+T++Q+  DRGYLV  D +  +L EF  ++G        RR ++ +
Sbjct: 1   MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTV 60

Query: 282 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTE-VS 458
               + DP D++ VFF +E K G+  ++    +M+++N+T  ++++Q+ ++  A+   V 
Sbjct: 61  LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120

Query: 459 QSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVA 638
            + KY LE F + ELL+NITEH LVP                Y   E QLPRIQ  DPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180

Query: 639 RYYGMKRGQVVKITRKSEVAGEYETYRYV 725
           RY+G+KRGQVVKI R SE AG Y TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209

>Q6BIJ0:RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 214

 Score =  134 bits (336), Expect = 8e-31
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 9/208 (4%)
 Frame = +3

Query: 123 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 302
           +D    RL+R  +TV +M+RDRGY +  +EI +SL EF  R  DS+   +  + C +   
Sbjct: 4   TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63

Query: 303 PNDKVDVF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEV 455
             + ++ F         F DE+  G+  +R+    + ++N + GI I Q +++  A   +
Sbjct: 64  TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123

Query: 456 SQSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPV 635
                  +E FQEG+L+VNIT H LVP                Y   E+QLPRIQ  DPV
Sbjct: 124 PTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPV 183

Query: 636 ARYYGMKRGQVVKITRKSEVAGEYETYR 719
            RY G+KRG+VVKI R+SE +G Y +YR
Sbjct: 184 GRYLGLKRGEVVKIIRRSETSGRYASYR 211

>Q9P4B9:RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Kluyveromyces marxianus (Yeast) (Candida kefyr)
          Length = 215

 Score =  129 bits (323), Expect = 3e-29
 Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 9/202 (4%)
 Frame = +3

Query: 141 RLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 320
           RL+R  RTV +M+RDRGY +  +EI LSL +F  +Y DS+ + +  +   +     + ++
Sbjct: 11  RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIE 70

Query: 321 VF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKY 473
            F         F DE+  G+  +++ V  + ++N   GI I Q  ++  A   +  +   
Sbjct: 71  KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130

Query: 474 RLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGM 653
            +E F E  L+VNIT H LVP                Y   E+QLPRIQ  DPVA Y G+
Sbjct: 131 VIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLGL 190

Query: 654 KRGQVVKITRKSEVAGEYETYR 719
           KRG+V+KI RKSE +G Y +YR
Sbjct: 191 KRGEVIKIIRKSETSGRYASYR 212

>Q6CJ62:RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 215

 Score =  128 bits (321), Expect = 4e-29
 Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 9/202 (4%)
 Frame = +3

Query: 141 RLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 320
           RL+R  +TV +M+RDRGY +  +EI LSL +F  +Y DS+ + +  +   +     + ++
Sbjct: 11  RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70

Query: 321 VF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKY 473
            F         F DE+  G+  +++ V  + ++N   GI I Q  ++  A   +  +   
Sbjct: 71  KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130

Query: 474 RLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGM 653
            +E F E  L+VNIT H LVP                Y   E+QLPRIQ  DPVA Y G+
Sbjct: 131 VIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLGL 190

Query: 654 KRGQVVKITRKSEVAGEYETYR 719
           KRG+V+KI RKSE +G Y +YR
Sbjct: 191 KRGEVIKIIRKSETSGRYASYR 212

>P20434:RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 215

 Score =  126 bits (317), Expect = 1e-28
 Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 9/202 (4%)
 Frame = +3

Query: 141 RLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 320
           RL+R  RTV +M++DRGY +  +E++L L +F  +Y DS+ R +  +   +     + + 
Sbjct: 11  RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESIS 70

Query: 321 VF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKY 473
            F         F DE   G+  +++ V  ++++N   GI + Q  ++  A   V      
Sbjct: 71  KFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPA 130

Query: 474 RLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGM 653
            +E F E  L+VNIT H LVP                Y   E+QLPRIQ  DPVA Y G+
Sbjct: 131 TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGL 190

Query: 654 KRGQVVKITRKSEVAGEYETYR 719
           KRG+VVKI RKSE +G Y +YR
Sbjct: 191 KRGEVVKIIRKSETSGRYASYR 212

>Q757H7:RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1 - Ashbya|
           gossypii (Yeast) (Eremothecium gossypii)
          Length = 215

 Score =  126 bits (316), Expect = 2e-28
 Identities = 80/211 (37%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
 Frame = +3

Query: 126 DGDNKR----LFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEK 293
           D DN+R    L+R  RTV +M+RDRGY +  +E+ LSL +F  +Y DS+ R +  +   +
Sbjct: 2   DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQ 61

Query: 294 DG--------DPN-DKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPAR 446
                      PN   V V F DE   G+  +++ V  + ++N   GI I Q  ++  A 
Sbjct: 62  SNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSAL 121

Query: 447 TEVSQSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLT 626
             +       +E F E  L+VNIT H LVP                Y   E+QLPRIQ  
Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRM 181

Query: 627 DPVARYYGMKRGQVVKITRKSEVAGEYETYR 719
           DPVA Y G+KRG+VVKI RKSE +G Y +YR
Sbjct: 182 DPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

>Q09191:RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 210

 Score =  125 bits (313), Expect = 4e-28
 Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
 Frame = +3

Query: 141 RLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRY---GDSVRRDEIVIHCEKDGDPND 311
           R+FR  +T  Q++ DRGY V   E+ L+L +F   +   G ++ R  +  + +   D N 
Sbjct: 10  RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69

Query: 312 -KVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALS-GPARTEVSQSKKYRLEV 485
             + + F  E   G+  +R+ V  +   N   GILI   +++   A+   + + ++ +E 
Sbjct: 70  GTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIET 129

Query: 486 FQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQ 665
           FQE +L+VNIT H LVP                Y   ETQLPRIQL DPVARY G+KRG+
Sbjct: 130 FQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGE 189

Query: 666 VVKITRKSEVAGEYETYR 719
           VVKI R+SE +G Y +YR
Sbjct: 190 VVKIVRRSETSGRYNSYR 207

>Q6FQA6:RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 215

 Score =  125 bits (313), Expect = 4e-28
 Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 9/208 (4%)
 Frame = +3

Query: 123 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 302
           +D    RL+R  RTV +M+RDRGY +  +E+ L+L +F  +Y DS+ R +  +   +   
Sbjct: 5   NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64

Query: 303 PNDKVDVF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEV 455
             + +  F         F DE   G+  +++ V  ++++    GI I Q  ++  A   V
Sbjct: 65  TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124

Query: 456 SQSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPV 635
                  +E F E  L+VNIT H LVP                Y   E+QLPRIQ  DPV
Sbjct: 125 PSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPV 184

Query: 636 ARYYGMKRGQVVKITRKSEVAGEYETYR 719
           A Y G+KRG+VVKI RKSE AG Y +YR
Sbjct: 185 ALYLGLKRGEVVKIIRKSETAGRYASYR 212

>Q6CA26:RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1 -|
           Yarrowia lipolytica (Candida lipolytica)
          Length = 212

 Score =  117 bits (294), Expect = 6e-26
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 9/210 (4%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKD 296
           M+SD D ++L++V RT  ++++DRGY + D E+ LS  +FV    D + +      C   
Sbjct: 1   MSSD-DAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMA 59

Query: 297 GDPNDKVDVF---------FLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPART 449
               + ++ F         F +E+   +  +R+    + +     GIL+ +  ++  A  
Sbjct: 60  SPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANR 119

Query: 450 EVSQSKKYRLEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTD 629
            +       ++ FQE +LLVNIT+H LVP                Y   E+QLPRIQ  D
Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQRED 179

Query: 630 PVARYYGMKRGQVVKITRKSEVAGEYETYR 719
           PVARY G++RGQ+VKI R+SE +G Y +YR
Sbjct: 180 PVARYLGLRRGQIVKIIRRSETSGRYASYR 209

>O27122:RPOH_METTH DNA-directed RNA polymerase subunit H - Methanobacterium|
           thermoautotrophicum
          Length = 77

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 32/71 (45%), Positives = 38/71 (53%)
 Frame = +3

Query: 513 ITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKSE 692
           I +H LVP                  AH  QLP+I+ TDPVA+  G KRG +VKI RKS 
Sbjct: 5   ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64

Query: 693 VAGEYETYRYV 725
            A E+ TYR V
Sbjct: 65  TAEEFVTYRLV 75

>P11521:RPOH_SULAC DNA-directed RNA polymerase subunit H - Sulfolobus acidocaldarius|
          Length = 84

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 30/74 (40%), Positives = 38/74 (51%)
 Frame = +3

Query: 507 VNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRK 686
           ++I+ H LVP                      QLP I+ +DPVA+  G K G ++KITRK
Sbjct: 9   IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68

Query: 687 SEVAGEYETYRYVI 728
           S   GE  TYRYVI
Sbjct: 69  SPFTGESVTYRYVI 82

>Q976A3:RPOH_SULTO DNA-directed RNA polymerase subunit H - Sulfolobus tokodaii|
          Length = 84

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +3

Query: 498 ELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKI 677
           ++ ++ ++H LVP                      QLP I+ +DP+A+  G K G ++KI
Sbjct: 6   KIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKI 65

Query: 678 TRKSEVAGEYETYRYVI 728
           TRKS ++GE   YRYVI
Sbjct: 66  TRKSSLSGEVVVYRYVI 82

>Q8PUQ8:RPOH_METMA DNA-directed RNA polymerase subunit H - Methanosarcina mazei|
           (Methanosarcina frisia)
          Length = 78

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/73 (38%), Positives = 38/73 (52%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKS 689
           ++ +H  VP                Y   + QLP+I++ DPV +  G   G VVKITRKS
Sbjct: 5   SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKS 64

Query: 690 EVAGEYETYRYVI 728
           + AGE + YR VI
Sbjct: 65  QTAGEADYYRLVI 77

>Q8TRB4:RPOH_METAC DNA-directed RNA polymerase subunit H - Methanosarcina acetivorans|
          Length = 78

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKS 689
           ++ +H  VP                Y   + QLP+I++ DPV++  G   G VV+ITRKS
Sbjct: 5   SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKS 64

Query: 690 EVAGEYETYRYVI 728
           + AGE + YR VI
Sbjct: 65  QTAGEADYYRLVI 77

>Q9V116:RPOH_PYRAB DNA-directed RNA polymerase subunit H - Pyrococcus abyssi|
          Length = 82

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 27/78 (34%), Positives = 37/78 (47%)
 Frame = +3

Query: 495 GELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVK 674
           G+   NI +H LVP                Y     QLP+I+ +DP  +  G K G +++
Sbjct: 3   GKSEFNIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIE 62

Query: 675 ITRKSEVAGEYETYRYVI 728
           I RKS  AG Y  YR V+
Sbjct: 63  IKRKSPTAGVYYYYRVVV 80

>O28394:RPOH_ARCFU DNA-directed RNA polymerase subunit H - Archaeoglobus fulgidus|
          Length = 76

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 27/72 (37%), Positives = 36/72 (50%)
 Frame = +3

Query: 513 ITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKSE 692
           + +H LVP                    + QLP+I+  DP+A+  G K G +VKITRKS 
Sbjct: 5   LQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSL 64

Query: 693 VAGEYETYRYVI 728
            AGE   YR V+
Sbjct: 65  TAGESVFYRLVV 76

>Q5UPX7:RPO5_MIMIV DNA-directed RNA polymerase subunit 5 - Mimivirus|
          Length = 205

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 43/204 (21%), Positives = 87/204 (42%)
 Frame = +3

Query: 117 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRRDEIVIHCEKD 296
           M S+ D  ++  +   ++ ML +R Y+  + + K  L +    + +   R + V   + D
Sbjct: 11  MKSNSDKVKI--ILGNIITMLGNRIYIDNNGDSK-PLLDPTNAFKNMEERGDNVFIIKAD 67

Query: 297 GDPNDKVDVFFLDESKTGLGVVRSCVDKMKQQNVTNGILILQKALSGPARTEVSQSKKYR 476
                 V V F    K      +S + +   +  T   +I+ K  +G   T + ++    
Sbjct: 68  NGDLYAVKVIF---QKITAISKQSVISEFLDEYETYKKIIVTKDYTGKIDTFILRNSG-- 122

Query: 477 LEVFQEGELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMK 656
            ++F+E E L ++  +   P                Y A+   L +I  +DP+ RY+ +K
Sbjct: 123 -QIFKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALK 181

Query: 657 RGQVVKITRKSEVAGEYETYRYVI 728
           +  +++I R S  +G+   YR V+
Sbjct: 182 KNDIIRIIRPSATSGQGIDYRVVV 205

>Q980Q9:RPOH_SULSO DNA-directed RNA polymerase subunit H - Sulfolobus solfataricus|
          Length = 84

 Score = 48.5 bits (114), Expect = 4e-05
 Identities = 26/69 (37%), Positives = 35/69 (50%)
 Frame = +3

Query: 522 HHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKSEVAG 701
           H+LVP                      QLP I+ +DPVAR    K G +++I RKS++ G
Sbjct: 14  HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73

Query: 702 EYETYRYVI 728
           E  +YRYVI
Sbjct: 74  EVVSYRYVI 82

>Q5JE31:RPOH_PYRKO DNA-directed RNA polymerase subunit H - Pyrococcus kodakaraensis|
           (Thermococcus kodakaraensis)
          Length = 82

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKS 689
           NI +H LVP                Y    +QLP+I+ +DP     G K G V++I RKS
Sbjct: 8   NIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKS 67

Query: 690 EVAGEYETYRYVI 728
             AG Y  YR V+
Sbjct: 68  PTAGYYYYYRLVV 80

>Q9YAT3:RPOH_AERPE DNA-directed RNA polymerase subunit H - Aeropyrum pernix|
          Length = 90

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = +3

Query: 513 ITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKSE 692
           I EH  VP                      QLP+I + DP+AR    K G +++ITR+S 
Sbjct: 12  ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEITRRSY 71

Query: 693 VAGEYETYRYVI 728
            AGE + YR+V+
Sbjct: 72  TAGEAKYYRFVV 83

>O74019:RPOH_PYRHO DNA-directed RNA polymerase subunit H - Pyrococcus horikoshii|
          Length = 82

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKS 689
           NI +H LVP                Y     QLP+I+ +DP  +  G K G +++I R+S
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67

Query: 690 EVAGEYETYRYVI 728
             AG Y  YR V+
Sbjct: 68  PTAGVYYYYRVVV 80

>Q8U0M2:RPOH_PYRFU DNA-directed RNA polymerase subunit H - Pyrococcus furiosus|
          Length = 82

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 27/78 (34%), Positives = 37/78 (47%)
 Frame = +3

Query: 495 GELLVNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVK 674
           G+   +I +H LVP                Y     QLP+I+ +DP  +  G K G V++
Sbjct: 3   GKKEFSIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIE 62

Query: 675 ITRKSEVAGEYETYRYVI 728
           I RKS  AG Y  YR V+
Sbjct: 63  IKRKSPTAGVYYYYRVVV 80

>Q58443:RPOH_METJA DNA-directed RNA polymerase subunit H - Methanococcus jannaschii|
          Length = 78

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 27/74 (36%), Positives = 34/74 (45%)
 Frame = +3

Query: 507 VNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRK 686
           + +T+H LVP                Y     QLP+I   DPV +  G K G VV++ RK
Sbjct: 1   MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60

Query: 687 SEVAGEYETYRYVI 728
           S  AG    YR VI
Sbjct: 61  SPTAGVSIAYRLVI 74

>P31815:RPOH_THECE DNA-directed RNA polymerase subunit H - Thermococcus celer|
          Length = 82

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 26/73 (35%), Positives = 34/73 (46%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRKS 689
           +I  H LVP                Y    +QLP+I+ +DP     G K G V++I RKS
Sbjct: 8   DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67

Query: 690 EVAGEYETYRYVI 728
             AG Y  YR V+
Sbjct: 68  RTAGYYYYYRLVV 80

>P41559:RPOH_METVA DNA-directed RNA polymerase subunit H - Methanococcus vannielii|
          Length = 78

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 507 VNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRK 686
           + ++ H +VP                Y     Q P++ ++DP+    G K G +VKITRK
Sbjct: 1   MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60

Query: 687 SEVAGEYETYRYVI 728
           S+ AGE   +R V+
Sbjct: 61  SQTAGETVYFRLVV 74

>P61519:RPOH_METMP DNA-directed RNA polymerase subunit H - Methanococcus maripaludis|
          Length = 78

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 26/74 (35%), Positives = 33/74 (44%)
 Frame = +3

Query: 507 VNITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVARYYGMKRGQVVKITRK 686
           + I+ H +VP                Y+    Q P++  TDP+    G   G VVKITR 
Sbjct: 1   MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60

Query: 687 SEVAGEYETYRYVI 728
           S  AGE   YR VI
Sbjct: 61  SPTAGESTYYRLVI 74

>Q8ZYR0:RPOH_PYRAE DNA-directed RNA polymerase subunit H - Pyrobaculum aerophilum|
          Length = 75

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 603 QLPRIQLTDPVARYYGMKRGQVVKITRKSEVAGEYETYRYVI 728
           QLP I+ +DP+A+  G K G V+KI R+S  AGE   YR V+
Sbjct: 32  QLPWIRASDPLAQKAGAKPGDVLKIVRESPTAGEAVVYRLVV 73

>Q03588:RPOH_THEAC DNA-directed RNA polymerase subunit H - Thermoplasma acidophilum|
          Length = 87

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 510 NITEHHLVPXXXXXXXXXXXXXXXXYTAHETQLPRIQLTDPVAR-----YYGMKRGQVVK 674
           N+ +H+LVP                    +  LP+I   DP  +     +  +K G ++K
Sbjct: 5   NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64

Query: 675 ITRKSEVAGEYETYRYV 725
           I RKS   G    YR V
Sbjct: 65  IVRKSPTMGHSVYYRVV 81

>Q9NS23:RASF1_HUMAN Ras association domain-containing protein 1 - Homo sapiens (Human)|
          Length = 344

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +3

Query: 150 RVRRTVLQMLRDRGYLVKDDEIKLSLYEFVQRYGDSVRR----DEIVIHCEKDGDPNDKV 317
           R R  +  +LR   +LV DD  K +L+E  +R+G    R    DE  +       P+DK 
Sbjct: 225 RAREVIEALLRK--FLVVDDPRKFALFERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKA 282

Query: 318 DVFFLDESKTG 350
             F L E+ +G
Sbjct: 283 LSFVLKENDSG 293


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 143,828,484
Number of extensions: 2894640
Number of successful extensions: 8492
Number of sequences better than 10.0: 33
Number of HSP's gapped: 8452
Number of HSP's successfully gapped: 33
Length of query: 346
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 232
Effective length of database: 69,416,809
Effective search space: 16104699688
Effective search space used: 16104699688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)