ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf52n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106355.1| Zea mays PCO138189 mRNA sequence 70 2e-08
2ref|NM_001059680.1| Oryza sativa (japonica cultivar-group) Os04g... 62 4e-06
3dbj|AK100492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 4e-06
4gb|AY105601.1| Zea mays PCO088367 mRNA sequence 58 7e-05
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-04
6emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 56 3e-04
7ref|XM_512960.2| PREDICTED: Pan troglodytes similar to Polymeras... 52 0.004
8gb|BC034144.1| Homo sapiens polymerase (RNA) II (DNA directed) p... 52 0.004
9gb|BC004441.1| Homo sapiens polymerase (RNA) II (DNA directed) p... 52 0.004
10dbj|AK122813.1| Homo sapiens cDNA FLJ16409 fis, clone BLADE20029... 52 0.004
11gb|S42643.1| RNA polymerase II [human, mRNA, 144 nt] 52 0.004
12ref|NM_002695.2| Homo sapiens polymerase (RNA) II (DNA directed)... 52 0.004
13gb|J04965.1|HUMRNAPII Human RNA polymerase II 23kD subunit (POLR... 52 0.004
14ref|NM_001051099.1| Oryza sativa (japonica cultivar-group) Os01g... 50 0.016
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.016
16dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.016
17emb|CR860977.1| Pongo pygmaeus mRNA; cDNA DKFZp459G0627 (from cl... 50 0.016
18dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.016
19dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.016
20dbj|AK235822.1| Sus scrofa mRNA, clone:OVRM10118E03, expressed i... 48 0.064
21dbj|AK231218.1| Sus scrofa mRNA, clone:ITT010018G09, expressed i... 48 0.064
22dbj|D38251.1|HUMRPB5 Homo sapiens mRNA for RPB5 (XAP4), complete... 48 0.064
23gb|BT013832.1| Lycopersicon esculentum clone 132789F, mRNA sequence 46 0.25
24ref|XM_754130.1| Ustilago maydis 521 hypothetical protein (UM030... 46 0.25
25ref|NM_203691.1| Xenopus tropicalis hypothetical protein MGC7601... 44 0.99
26gb|BC072869.1| Xenopus laevis MGC80278 protein, mRNA (cDNA clone... 44 0.99
27gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 5... 44 0.99
28ref|XM_754890.1| Ustilago maydis 521 hypothetical protein (UM038... 44 0.99
29gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 f... 44 0.99
30dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.99
31dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.99
32dbj|AB159671.1| Streptomyces mobaraensis PTP-SM gene for prolyl ... 44 0.99
33emb|CR761820.2| Xenopus tropicalis finished cDNA, clone TGas067j17 44 0.99
34gb|AC005807.1|AC005807 Mus musculus chromosome 17 BAC clone citb... 44 0.99
35emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 i... 44 0.99
36ref|XM_001227565.1| Chaetomium globosum CBS 148.51 hypothetical ... 42 3.9
37ref|NM_001065746.1| Oryza sativa (japonica cultivar-group) Os07g... 42 3.9
38ref|NM_001065745.1| Oryza sativa (japonica cultivar-group) Os07g... 42 3.9
39gb|BT028186.1| Gasterosteus aculeatus clone CNB153-A03 mRNA sequ... 42 3.9
40gb|AC189451.1| Brassica rapa subsp. pekinensis clone KBrB071P24,... 42 3.9
41gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, comple... 42 3.9
42gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, com... 42 3.9
43gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome... 42 3.9
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 3.9
45emb|CR678770.2|CNS0FMOU Tetraodon nigroviridis full-length cDNA 42 3.9
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
47gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence 42 3.9
48gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 3.9
49gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, comple... 42 3.9
50dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
51dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 42 3.9
52dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.9
53dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.9
54emb|CR385484.1| Gallus gallus finished cDNA, clone ChEST974k21 42 3.9
55emb|BX930905.2| Gallus gallus finished cDNA, clone ChEST967e2 42 3.9
56dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.9
57gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 3.9 
>gb|AY106355.1| Zea mays PCO138189 mRNA sequence
          Length = 1078
 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 466 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 516
           ||||||||| ||||||||||||||||||||  ||||||||||| |||||||
Sbjct: 493 agaagtaccacctcgaggtcttccaggaagctgagcttcttgtcaacatta 543



 Score = 69.9 bits (35), Expect = 2e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 597 gaaactcagctccccaggattcagctcacggatccggtggcaagatactacggcatgaag 656
           ||||| ||||| ||| |||||||| | || || ||| | ||||||||||| || ||||||
Sbjct: 624 gaaacccagctgccccggattcagattacagacccgatagcaagatactatgggatgaag 683

                                  
Query: 657 cgtgggcaggtggtgaagatcac 679
           ||||||||||| |||||||||||
Sbjct: 684 cgtgggcaggtcgtgaagatcac 706
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>ref|NM_001059680.1| Oryza sativa (japonica cultivar-group) Os04g0487300 (Os04g0487300)
           mRNA, complete cds
          Length = 2656

 Score = 61.9 bits (31), Expect = 4e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 466 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 516
           |||||| || |||||||||||||||||||| ||| || |||||||||||||
Sbjct: 435 agaagttccacctcgaggtcttccaggaagcggaactgcttgtgaacatta 485



 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                        
Query: 603  cagctccccaggattcagctcacggatccggtggcaagatactacggcatgaagcgtggg 662
            ||||||||| |||||||  | ||||| ||  | |||||||| ||||||||||||||||||
Sbjct: 2207 cagctcccccggattcaaattacggacccaatagcaagatattacggcatgaagcgtggg 2266

                            
Query: 663  caggtggtgaagatca 678
            || || || |||||||
Sbjct: 2267 caagttgtaaagatca 2282



 Score = 42.1 bits (21), Expect = 3.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 141 cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 181
           ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 107 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 147
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>dbj|AK100492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098I05, full
           insert sequence
          Length = 2658

 Score = 61.9 bits (31), Expect = 4e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 466 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 516
           |||||| || |||||||||||||||||||| ||| || |||||||||||||
Sbjct: 437 agaagttccacctcgaggtcttccaggaagcggaactgcttgtgaacatta 487



 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                        
Query: 603  cagctccccaggattcagctcacggatccggtggcaagatactacggcatgaagcgtggg 662
            ||||||||| |||||||  | ||||| ||  | |||||||| ||||||||||||||||||
Sbjct: 2209 cagctcccccggattcaaattacggacccaatagcaagatattacggcatgaagcgtggg 2268

                            
Query: 663  caggtggtgaagatca 678
            || || || |||||||
Sbjct: 2269 caagttgtaaagatca 2284



 Score = 42.1 bits (21), Expect = 3.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 141 cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 181
           ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 109 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 149
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>gb|AY105601.1| Zea mays PCO088367 mRNA sequence
          Length = 1112

 Score = 58.0 bits (29), Expect = 7e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 156 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
           |||||||||||| ||||||||||||| ||||| || |||||||||
Sbjct: 201 cggcgcacggtgatgcagatgctgcgtgaccgtggctacctggtg 245



 Score = 44.1 bits (22), Expect = 0.99
 Identities = 67/82 (81%)
 Strand = Plus / Plus

                                                                       
Query: 597 gaaactcagctccccaggattcagctcacggatccggtggcaagatactacggcatgaag 656
           ||||||||||| || || || ||| ||||||||||  | || || ||||||||| ||| |
Sbjct: 645 gaaactcagcttccaagaatacagatcacggatcctattgctaggtactacggcctgagg 704

                                 
Query: 657 cgtgggcaggtggtgaagatca 678
           || || ||||| ||||||||||
Sbjct: 705 cgaggccaggtcgtgaagatca 726
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 603      cagctccccaggattcagctcacggatccggtggcaagatactacggcatgaagcgtggg 662
                ||||||||| |||||||  | ||||| ||  | |||||||| ||||||||||||||||||
Sbjct: 24328147 cagctcccccggattcaaattacggacccaatagcaagatattacggcatgaagcgtggg 24328088

                                
Query: 663      caggtggtgaagatca 678
                || || || |||||||
Sbjct: 24328087 caagttgtaaagatca 24328072



 Score = 42.1 bits (21), Expect = 3.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 141      cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 181
                ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 24330486 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 24330446
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>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30,
             complete sequence
          Length = 141128

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                         
Query: 603   cagctccccaggattcagctcacggatccggtggcaagatactacggcatgaagcgtggg 662
             ||||||||| |||||||  | ||||| ||  | |||||||| ||||||||||||||||||
Sbjct: 44558 cagctcccccggattcaaattacggacccaatagcaagatattacggcatgaagcgtggg 44499

                             
Query: 663   caggtggtgaagatca 678
             || || || |||||||
Sbjct: 44498 caagttgtaaagatca 44483



 Score = 42.1 bits (21), Expect = 3.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 141   cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 181
             ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 46897 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 46857
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>ref|XM_512960.2| PREDICTED: Pan troglodytes similar to Polymerase (RNA) II (DNA
           directed) polypeptide E, 25kDa (LOC456359), mRNA
          Length = 1266

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 616 aagcgtgggcaggtggtgaagatcatccgg 645
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>gb|BC034144.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa, mRNA (cDNA clone MGC:32760 IMAGE:4617000),
           complete cds
          Length = 1284

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 598 aagcgtgggcaggtggtgaagatcatccgg 627
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>gb|BC004441.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa, mRNA (cDNA clone MGC:4035 IMAGE:2820565),
           complete cds
          Length = 1248

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 578 aagcgtgggcaggtggtgaagatcatccgg 607
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>dbj|AK122813.1| Homo sapiens cDNA FLJ16409 fis, clone BLADE2002972, highly  similar
            to DNA-DIRECTED RNA POLYMERASE II 23 KDA POLYPEPTIDE (EC
            2.7.7.6)
          Length = 2440

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 654  aagcgtgggcaggtggtgaagatcacccgg 683
            ||||||||||||||||||||||||| ||||
Sbjct: 1795 aagcgtgggcaggtggtgaagatcatccgg 1824
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>gb|S42643.1| RNA polymerase II [human, mRNA, 144 nt]
          Length = 144

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 70  aagcgtgggcaggtggtgaagatcatccgg 99
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>ref|NM_002695.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E,
           25kDa (POLR2E), mRNA
          Length = 1238

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 578 aagcgtgggcaggtggtgaagatcatccgg 607
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>gb|J04965.1|HUMRNAPII Human RNA polymerase II 23kD subunit (POLR2) mRNA, complete cds
          Length = 1212

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 654 aagcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||||| ||||
Sbjct: 580 aagcgtgggcaggtggtgaagatcatccgg 609
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>ref|NM_001051099.1| Oryza sativa (japonica cultivar-group) Os01g0805800 (Os01g0805800)
           mRNA, complete cds
          Length = 984

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 156 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
           ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 172 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 216
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 156      cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
                ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 34159470 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 34159426



 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    cggaggcggagaagggatggcg 122
              ||||||||||||||||||||||
Sbjct: 388647 cggaggcggagaagggatggcg 388668
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 156    cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
              ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 155948 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 155904
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>emb|CR860977.1| Pongo pygmaeus mRNA; cDNA DKFZp459G0627 (from clone DKFZp459G0627)
          Length = 1312

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 654 aagcgtgggcaggtggtgaagatca 678
           |||||||||||||||||||||||||
Sbjct: 602 aagcgtgggcaggtggtgaagatca 626
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>dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128E13, full
           insert sequence
          Length = 986

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 156 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
           ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 173 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 217
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>dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F07, full
           insert sequence
          Length = 950

 Score = 50.1 bits (25), Expect = 0.016
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 156 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 200
           ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 131 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 175
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>dbj|AK235822.1| Sus scrofa mRNA, clone:OVRM10118E03, expressed in ovary
          Length = 1011

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 648 ggcatgaagcgtgggcaggtggtgaagatcacccgg 683
           ||||| ||||| ||||||||||||||||||| ||||
Sbjct: 556 ggcataaagcgagggcaggtggtgaagatcatccgg 591
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>dbj|AK231218.1| Sus scrofa mRNA, clone:ITT010018G09, expressed in intestine
          Length = 1020

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 648 ggcatgaagcgtgggcaggtggtgaagatcacccgg 683
           ||||| ||||| ||||||||||||||||||| ||||
Sbjct: 566 ggcataaagcgagggcaggtggtgaagatcatccgg 601
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>dbj|D38251.1|HUMRPB5 Homo sapiens mRNA for RPB5 (XAP4), complete cds
          Length = 1254

 Score = 48.1 bits (24), Expect = 0.064
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 656 gcgtgggcaggtggtgaagatcacccgg 683
           ||||||||||||||||||||||| ||||
Sbjct: 588 gcgtgggcaggtggtgaagatcatccgg 615
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>gb|BT013832.1| Lycopersicon esculentum clone 132789F, mRNA sequence
          Length = 1914

 Score = 46.1 bits (23), Expect = 0.25
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 559 aggagaagaaggagctgctgcag 581
           |||||||||||||||||||||||
Sbjct: 688 aggagaagaaggagctgctgcag 666
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>ref|XM_754130.1| Ustilago maydis 521 hypothetical protein (UM03076.1) partial mRNA
          Length = 1932

 Score = 46.1 bits (23), Expect = 0.25
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 309  gacaaggtcgacgtcttcttcctcgac 335
            ||||||||||||||| |||||||||||
Sbjct: 1750 gacaaggtcgacgtcatcttcctcgac 1776
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>ref|NM_203691.1| Xenopus tropicalis hypothetical protein MGC76019 (MGC76019), mRNA
 gb|BC061420.1| Xenopus tropicalis hypothetical protein MGC76019, mRNA (cDNA clone
            MGC:76019 IMAGE:5384697), complete cds
          Length = 1260

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 562  agaagaaggagctgctgcagaaatac 587
            |||||| |||||||||||||||||||
Sbjct: 1081 agaagatggagctgctgcagaaatac 1106
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>gb|BC072869.1| Xenopus laevis MGC80278 protein, mRNA (cDNA clone MGC:80278
            IMAGE:5073408), complete cds
          Length = 1222

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 562  agaagaaggagctgctgcagaaatac 587
            |||||| |||||||||||||||||||
Sbjct: 1057 agaagatggagctgctgcagaaatac 1082
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>gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 522h13, complete sequence
          Length = 148334

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 560    ggagaagaaggagctgctgcag 581
              ||||||||||||||||||||||
Sbjct: 133506 ggagaagaaggagctgctgcag 133485
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>ref|XM_754890.1| Ustilago maydis 521 hypothetical protein (UM03836.1) partial mRNA
          Length = 1665

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 557 cgaggagaagaaggagctgctgcaga 582
           ||||||||||||||||||| ||||||
Sbjct: 453 cgaggagaagaaggagctgttgcaga 478
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>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region,
             complete sequence
          Length = 192871

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 560   ggagaagaaggagctgctgcag 581
             ||||||||||||||||||||||
Sbjct: 49911 ggagaagaaggagctgctgcag 49890
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    cggaggcggagaagggatggcg 122
              ||||||||||||||||||||||
Sbjct: 140485 cggaggcggagaagggatggcg 140506
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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   cggaggcggagaagggatggcg 122
             ||||||||||||||||||||||
Sbjct: 28848 cggaggcggagaagggatggcg 28869
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>dbj|AB159671.1| Streptomyces mobaraensis PTP-SM gene for prolyl tripeptidyl
           peptidase, complete cds
          Length = 1434

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 257 cgtccgccgcgacgagatcgtc 278
           ||||||||||||||||||||||
Sbjct: 696 cgtccgccgcgacgagatcgtc 717
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>emb|CR761820.2| Xenopus tropicalis finished cDNA, clone TGas067j17
          Length = 993

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 562 agaagaaggagctgctgcagaaatac 587
           |||||| |||||||||||||||||||
Sbjct: 821 agaagatggagctgctgcagaaatac 846
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>gb|AC005807.1|AC005807 Mus musculus chromosome 17 BAC clone citb585c7 from MHC region,
             complete sequence
          Length = 65870

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 560   ggagaagaaggagctgctgcag 581
             ||||||||||||||||||||||
Sbjct: 16097 ggagaagaaggagctgctgcag 16118
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>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11,
              complete sequence
          Length = 178231

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 562    agaagaaggagctgctgcagaaatac 587
              |||||| |||||||||||||||||||
Sbjct: 131641 agaagatggagctgctgcagaaatac 131616
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>ref|XM_001227565.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_09639)
           mRNA, complete cds
          Length = 666

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 38  cgccatccgcgccggcgccgcctccccccaccg 70
           |||||||| |||| ||| |||||||||||||||
Sbjct: 417 cgccatccccgcccgcgtcgcctccccccaccg 385
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>ref|NM_001065746.1| Oryza sativa (japonica cultivar-group) Os07g0224900 (Os07g0224900)
           mRNA, complete cds
          Length = 1992

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 41  catccgcgccggcgccgcctccccc 65
           |||||||||||||||||| ||||||
Sbjct: 644 catccgcgccggcgccgcgtccccc 668
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>ref|NM_001065745.1| Oryza sativa (japonica cultivar-group) Os07g0225000 (Os07g0225000)
            mRNA, complete cds
          Length = 1561

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 41   catccgcgccggcgccgcctccccc 65
            |||||||||||||||||| ||||||
Sbjct: 1217 catccgcgccggcgccgcgtccccc 1193
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>gb|BT028186.1| Gasterosteus aculeatus clone CNB153-A03 mRNA sequence
          Length = 2709

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 552 aatgacgaggagaagaaggagctgc 576
           ||||| |||||||||||||||||||
Sbjct: 215 aatgaggaggagaagaaggagctgc 239
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>gb|AC189451.1| Brassica rapa subsp. pekinensis clone KBrB071P24, complete sequence
          Length = 110632

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   cgcacggtgttgcagatgctg 179
             |||||||||||||||||||||
Sbjct: 67510 cgcacggtgttgcagatgctg 67490
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>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence
          Length = 193376

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 652  tgaagcgtgggcaggtggtgaagat 676
            ||||||| |||||||||||||||||
Sbjct: 6010 tgaagcgcgggcaggtggtgaagat 6034
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>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence
          Length = 187162

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 792    gctaattcctctcagtttgaa 812
              |||||||||||||||||||||
Sbjct: 154270 gctaattcctctcagtttgaa 154250
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>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence
          Length = 216011

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 792    gctaattcctctcagtttgaa 812
              |||||||||||||||||||||
Sbjct: 196719 gctaattcctctcagtttgaa 196739
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 369    tgcgtcgacaagatgaagcag 389
              |||||||||||||||||||||
Sbjct: 643905 tgcgtcgacaagatgaagcag 643925
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>emb|CR678770.2|CNS0FMOU Tetraodon nigroviridis full-length cDNA
          Length = 629

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 550 tgaatgacgaggagaagaaggagctgctg 578
           |||| ||||||||||||| ||||||||||
Sbjct: 512 tgaaggacgaggagaagatggagctgctg 540
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 41      catccgcgccggcgccgcctccccc 65
               |||||||||||||||||| ||||||
Sbjct: 6982733 catccgcgccggcgccgcgtccccc 6982757
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>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence
          Length = 158921

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 487   tccaggaaggggagcttcttg 507
             |||||||||||||||||||||
Sbjct: 56685 tccaggaaggggagcttcttg 56665
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 315     gtcgacgtcttcttcctcgac 335
               |||||||||||||||||||||
Sbjct: 2387166 gtcgacgtcttcttcctcgac 2387146
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>gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, complete sequence
          Length = 167429

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    ccgcgccggcgccgcctcccc 64
             |||||||||||||||||||||
Sbjct: 11667 ccgcgccggcgccgcctcccc 11647
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>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0066H10
          Length = 200968

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 41   catccgcgccggcgccgcctccccc 65
            |||||||||||||||||| ||||||
Sbjct: 9422 catccgcgccggcgccgcgtccccc 9446
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>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0668C05
          Length = 142081

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 41     catccgcgccggcgccgcctccccc 65
              |||||||||||||||||| ||||||
Sbjct: 106548 catccgcgccggcgccgcgtccccc 106572
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>dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074H04, full
           insert sequence
          Length = 1562

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 41  catccgcgccggcgccgcctccccc 65
           |||||||||||||||||| ||||||
Sbjct: 346 catccgcgccggcgccgcgtccccc 370
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>dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052H04, full
           insert sequence
          Length = 1993

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 41  catccgcgccggcgccgcctccccc 65
           |||||||||||||||||| ||||||
Sbjct: 645 catccgcgccggcgccgcgtccccc 669
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>emb|CR385484.1| Gallus gallus finished cDNA, clone ChEST974k21
          Length = 930

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 626 ggatccggtggcaagatactacggcatgaagcgtgggcaggtggtgaagatca 678
           |||||| |||||  |||||| ||| || ||||| || ||||||||||||||||
Sbjct: 526 ggatcccgtggcccgatacttcgggataaagcgaggccaggtggtgaagatca 578
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>emb|BX930905.2| Gallus gallus finished cDNA, clone ChEST967e2
          Length = 947

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 626 ggatccggtggcaagatactacggcatgaagcgtgggcaggtggtgaagatca 678
           |||||| |||||  |||||| ||| || ||||| || ||||||||||||||||
Sbjct: 546 ggatcccgtggcccgatacttcgggataaagcgaggccaggtggtgaagatca 598
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>dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079F16, full
           insert sequence
          Length = 1846

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 41  catccgcgccggcgccgcctccccc 65
           |||||||||||||||||| ||||||
Sbjct: 643 catccgcgccggcgccgcgtccccc 667
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 314     ggtcgacgtcttcttcctcga 334
               |||||||||||||||||||||
Sbjct: 1547638 ggtcgacgtcttcttcctcga 1547618


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 150,942,670
Number of extensions: 8250596
Number of successful extensions: 169485
Number of sequences better than 10.0: 57
Number of HSP's gapped: 169485
Number of HSP's successfully gapped: 66
Length of query: 1040
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1017
Effective length of database: 18,503,978,556
Effective search space: 18818546191452
Effective search space used: 18818546191452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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