ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf52n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9GLP0:ITB1_PIG Integrin beta-1 precursor - Sus scrofa (Pig) 34 2.4
2Q96KW2:PO122_HUMAN POM121-like protein 2 - Homo sapiens (Human) 33 3.2
3O95466:FMNL_HUMAN Formin-like protein 1 - Homo sapiens (Human) 33 4.1
4P53713:ITB1_FELCA Integrin beta-1 precursor - Felis silvestris c... 32 7.0
5P53712:ITB1_BOVIN Integrin beta-1 precursor - Bos taurus (Bovine) 32 7.0
6O60347:TBC12_HUMAN TBC1 domain family member 12 - Homo sapiens (... 32 7.1

>Q9GLP0:ITB1_PIG Integrin beta-1 precursor - Sus scrofa (Pig)|
          Length = 798
 Score = 33.9 bits (76), Expect = 2.4
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
 Frame = +2

Query: 1541 NGLCTCYTILNVV*REKILVVCPCN--FLG-------DIPSSIACRGLACAFRRMLSCEC 1693
            NG+C C              VC CN  + G       D  S +A  G  C  R +  CEC
Sbjct: 571  NGVCKCR-------------VCECNPNYTGSACDCSLDTTSCMAVNGQICNGRGV--CEC 615

Query: 1694 SVCKGKAMQLQG*RVKPCLGSLYKCMQH 1777
             VCK    + QG   + C   L  C +H
Sbjct: 616  GVCKCTDPKFQGPTCEMCQTCLGVCAEH 643



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>Q96KW2:PO122_HUMAN POM121-like protein 2 - Homo sapiens (Human)|
          Length = 971

 Score = 33.5 bits (75), Expect = 3.2
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 258  PRSGVGITGALPLPSSNPSVTWGRGESGSPCAITSAAESTYLKRGSVSTRHA-SPIA 425
            P SG    GALP  ++N  + +G+G S +   + S   +  L RGS+S R   +PIA
Sbjct: 850  PTSGAFSIGALPSGTTNTMIPFGKGWSQNTEGLPSHRTAFSLGRGSISARKTMAPIA 906



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>O95466:FMNL_HUMAN Formin-like protein 1 - Homo sapiens (Human)|
          Length = 1100

 Score = 33.1 bits (74), Expect = 4.1
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 448 QSLSRVAMAMGDACRVDTLPLFRYVDSAADVMAHGDPL-SPLPQVTLGLELGKGKAPVMP 272
           + L R+    GDA  ++ LP+     S  D    G P  SP P +    E   G AP  P
Sbjct: 486 KGLIRILRGPGDAVSIEILPVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPP 545

Query: 271 TPERGI 254
            P  G+
Sbjct: 546 PPLPGL 551



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>P53713:ITB1_FELCA Integrin beta-1 precursor - Felis silvestris catus (Cat)|
          Length = 798

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
 Frame = +2

Query: 1541 NGLCTCYTILNVV*REKILVVCPCN--FLG-------DIPSSIACRGLACAFRRMLSCEC 1693
            NG+C C              VC CN  + G       D  S +A  G  C  R +  CEC
Sbjct: 571  NGVCKCR-------------VCECNPNYTGSACDCSLDTTSCMATNGQICNGRGI--CEC 615

Query: 1694 SVCKGKAMQLQG*RVKPCLGSLYKCMQH 1777
              CK    + QG   + C   L  C +H
Sbjct: 616  GACKCTDPKFQGPTCEMCQTCLGVCAEH 643



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>P53712:ITB1_BOVIN Integrin beta-1 precursor - Bos taurus (Bovine)|
          Length = 798

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
 Frame = +2

Query: 1541 NGLCTCYTILNVV*REKILVVCPCN--FLG-------DIPSSIACRGLACAFRRMLSCEC 1693
            NG+C C              VC CN  + G       D  S +A  G  C  R +  CEC
Sbjct: 571  NGVCKCR-------------VCECNPNYTGSACDCSLDTTSCMAVNGQICNGRGV--CEC 615

Query: 1694 SVCKGKAMQLQG*RVKPCLGSLYKCMQH 1777
              CK    + QG   + C   L  C +H
Sbjct: 616  GACKCTDPKFQGPTCEMCQTCLGVCAEH 643



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>O60347:TBC12_HUMAN TBC1 domain family member 12 - Homo sapiens (Human)|
          Length = 775

 Score = 32.3 bits (72), Expect = 7.1
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 235 DESPARQSLARV*AS------PGLCLCPAPIRASLGEGGRVGLHAPSHQPRN 372
           +E+P RQ L R  A+      PGLC CP P        G+ G   PS  PR+
Sbjct: 62  EETPPRQLLQRYLAAAGEQLEPGLCYCPLP-------AGQAGAPPPSAAPRS 106


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 329,356,715
Number of extensions: 7272839
Number of successful extensions: 17232
Number of sequences better than 10.0: 6
Number of HSP's gapped: 17210
Number of HSP's successfully gapped: 6
Length of query: 627
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 508
Effective length of database: 68,045,334
Effective search space: 34567029672
Effective search space used: 34567029672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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