| Clone Name | FLbaf52l23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC126389.7| Homo sapiens chromosome 11, clone CTD-3236F5, complete sequence Length = 90300 Score = 48.1 bits (24), Expect = 0.057 Identities = 24/24 (100%) Strand = Plus / Plus Query: 851 tttgctatttgtcttgtcattttc 874 |||||||||||||||||||||||| Sbjct: 61994 tttgctatttgtcttgtcattttc 62017
>gb|AC006597.2|AC006597 Homo sapiens Chromosome 11p14.3 PAC clone pDJ292d23, complete sequence Length = 103306 Score = 48.1 bits (24), Expect = 0.057 Identities = 24/24 (100%) Strand = Plus / Plus Query: 851 tttgctatttgtcttgtcattttc 874 |||||||||||||||||||||||| Sbjct: 96290 tttgctatttgtcttgtcattttc 96313
>gb|AC004796.2|AC004796 Homo sapiens Chromosome 11p14.3 PAC clone pDJ1034g4, complete sequence Length = 115812 Score = 48.1 bits (24), Expect = 0.057 Identities = 24/24 (100%) Strand = Plus / Plus Query: 851 tttgctatttgtcttgtcattttc 874 |||||||||||||||||||||||| Sbjct: 54159 tttgctatttgtcttgtcattttc 54182
>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence Length = 166125 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Minus Query: 851 tttgctatttgtcttgtcatttt 873 ||||||||||||||||||||||| Sbjct: 88366 tttgctatttgtcttgtcatttt 88344
>gb|AC182769.3| Cavia porcellus clone CH234-278G5, complete sequence Length = 118835 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Minus Query: 860 tgtcttgtcattttcaatttcg 881 |||||||||||||||||||||| Sbjct: 79999 tgtcttgtcattttcaatttcg 79978
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 44.1 bits (22), Expect = 0.90 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 agccatcttcatccatgcgacc 315 |||||||||||||||||||||| Sbjct: 380565 agccatcttcatccatgcgacc 380586
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.90 Identities = 25/26 (96%) Strand = Plus / Minus Query: 755 gctaccagcccacagcatcccctccc 780 |||||||| ||||||||||||||||| Sbjct: 19042547 gctaccaggccacagcatcccctccc 19042522
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 44.1 bits (22), Expect = 0.90 Identities = 25/26 (96%) Strand = Plus / Minus Query: 755 gctaccagcccacagcatcccctccc 780 |||||||| ||||||||||||||||| Sbjct: 7964 gctaccaggccacagcatcccctccc 7939
>dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1129H01 Length = 101104 Score = 44.1 bits (22), Expect = 0.90 Identities = 25/26 (96%) Strand = Plus / Minus Query: 755 gctaccagcccacagcatcccctccc 780 |||||||| ||||||||||||||||| Sbjct: 99590 gctaccaggccacagcatcccctccc 99565
>gb|DQ306402.1| Oryctolagus cuniculus isolate Vv1_1/94 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2906 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2613 cctcaaccccatcccaagagc 2633
>gb|DQ306401.1| Oryctolagus cuniculus isolate Elv6 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306400.1| Oryctolagus cuniculus isolate Elv3 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306399.1| Oryctolagus cuniculus isolate Id85 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2881 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2588 cctcaaccccatcccaagagc 2608
>gb|DQ306398.1| Oryctolagus cuniculus isolate Vrl7 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2883 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2590 cctcaaccccatcccaagagc 2610
>gb|DQ306397.1| Oryctolagus cuniculus isolate vrl4 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2899 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2606 cctcaaccccatcccaagagc 2626
>gb|DQ306395.1| Oryctolagus cuniculus isolate Don6 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306394.1| Oryctolagus cuniculus isolate Pfr7 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306393.1| Oryctolagus cuniculus isolate Pfr5 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2899 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2606 cctcaaccccatcccaagagc 2626
>gb|DQ306392.1| Oryctolagus cuniculus isolate Pfr1 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2883 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2590 cctcaaccccatcccaagagc 2610
>gb|DQ306391.1| Oryctolagus cuniculus isolate Luc17 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2883 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2590 cctcaaccccatcccaagagc 2610
>gb|DQ306390.1| Oryctolagus cuniculus isolate Luc9 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306389.1| Oryctolagus cuniculus isolate Luc4 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306388.1| Oryctolagus cuniculus isolate Amo2 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306387.1| Oryctolagus cuniculus isolate Vdm12 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306386.1| Oryctolagus cuniculus isolate Cre1 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306385.1| Oryctolagus cuniculus isolate Tol64 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2914 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2621 cctcaaccccatcccaagagc 2641
>gb|DQ306384.1| Oryctolagus cuniculus isolate Tol50 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2899 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2606 cctcaaccccatcccaagagc 2626
>gb|DQ306383.1| Oryctolagus cuniculus isolate Tol25 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306380.1| Oryctolagus cuniculus isolate Gal25c3 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>gb|DQ306379.1| Oryctolagus cuniculus isolate Cue3 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2887 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2594 cctcaaccccatcccaagagc 2614
>gb|DQ306378.1| Oryctolagus cuniculus isolate Cue1 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2901 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2608 cctcaaccccatcccaagagc 2628
>gb|DQ306365.1| Oryctolagus cuniculus isolate Zrg20 X-linked SMCY-like protein (Smcx) gene, partial sequence Length = 2900 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 cctcaaccccatcccaagagc 604 ||||||||||||||||||||| Sbjct: 2607 cctcaaccccatcccaagagc 2627
>ref|XM_613272.2| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic, kainate 1 (LOC533760), partial mRNA Length = 1608 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 tcctcaaccccctgtctcctg 275 ||||||||||||||||||||| Sbjct: 710 tcctcaaccccctgtctcctg 730
>ref|XM_544843.2| PREDICTED: Canis familiaris similar to Glutamate receptor, ionotropic kainate 1 precursor (Glutamate receptor 5) (GluR-5) (GluR5) (LOC487719), mRNA Length = 2772 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 tcctcaaccccctgtctcctg 275 ||||||||||||||||||||| Sbjct: 1631 tcctcaaccccctgtctcctg 1651
>gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, complete sequence Length = 218924 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 acctcatcctcaaccccctgtctcc 273 ||||| ||||||||||||||||||| Sbjct: 197901 acctcctcctcaaccccctgtctcc 197877
>gb|AC112144.4| Mus musculus BAC clone RP23-32B4 from 19, complete sequence Length = 216521 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 acctcatcctcaaccccctgtctcc 273 ||||| ||||||||||||||||||| Sbjct: 110157 acctcctcctcaaccccctgtctcc 110133
>gb|AC113322.7| Mus musculus chromosome 3, clone RP23-446O11, complete sequence Length = 209697 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 acctcatcctcaaccccctgtctcc 273 ||||| ||||||||||||||||||| Sbjct: 119057 acctcctcctcaaccccctgtctcc 119033
>gb|AC087560.26| Mus musculus strain C57BL/6J clone rp23-448g13 map X, complete sequence Length = 203953 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 799 aggctggcctggtgttctctg 819 ||||||||||||||||||||| Sbjct: 124659 aggctggcctggtgttctctg 124639
>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the Trpv3 gene for transient receptor potential cation channel subfamily V member 3, the Aspa gene for aspartoacylase (aminoacylase) 2, a novel gene, the genes for olfactory receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor MOR135 pseudogenes and a CpG island, complete sequence Length = 208137 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 acctcatcctcaaccccctgtctcc 273 ||||||||| ||||||||||||||| Sbjct: 53404 acctcatccccaaccccctgtctcc 53428
>gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228174 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 acctcatcctcaaccccctgtctcc 273 ||||| ||||||||||||||||||| Sbjct: 128997 acctcctcctcaaccccctgtctcc 128973
>emb|AL713913.10| Mouse DNA sequence from clone RP23-125F10 on chromosome 2, complete sequence Length = 190485 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 tcacagaagcaaggagccaag 149 ||||||||||||||||||||| Sbjct: 31163 tcacagaagcaaggagccaag 31183
>emb|AL671920.9| Mouse DNA sequence from clone RP23-445A22 on chromosome X, complete sequence Length = 166399 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 799 aggctggcctggtgttctctg 819 ||||||||||||||||||||| Sbjct: 75822 aggctggcctggtgttctctg 75802 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 141,610,859 Number of extensions: 7468812 Number of successful extensions: 143787 Number of sequences better than 10.0: 42 Number of HSP's gapped: 143787 Number of HSP's successfully gapped: 42 Length of query: 938 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 915 Effective length of database: 18,503,978,556 Effective search space: 16931140378740 Effective search space used: 16931140378740 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)