ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf50c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9JL04:FMN2_MOUSE Formin-2 - Mus musculus (Mouse) 32 2.0
2P34545:CBP1_CAEEL Protein cbp-1 - Caenorhabditis elegans 31 4.4
3Q9NZ56:FMN2_HUMAN Formin-2 - Homo sapiens (Human) 30 7.4
4Q91XA9:CHIA_MOUSE Acidic mammalian chitinase precursor - Mus mus... 30 7.5
5Q12986:NFX1_HUMAN Transcriptional repressor NF-X1 - Homo sapiens... 30 9.8

>Q9JL04:FMN2_MOUSE Formin-2 - Mus musculus (Mouse)|
          Length = 1567
 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +3

Query: 228  VHLPPKPELPNVELPPFPAVHXXXXXXXXXXXXS------AFPEVNLPPKPELP 371
            V +PP P LP V +PP P +             S      A P V +PP P LP
Sbjct: 1007 VGIPPPPPLPGVGIPPPPPLPGMGIPPPPPLPGSGIPPPPALPGVAIPPPPPLP 1060



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 228  VHLPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            V +PP P LP V +PP P +                P V +PP P LP
Sbjct: 952  VGIPPPPPLPGVGIPPPPPL-----PGVGIPPPPPLPGVGIPPPPPLP 994



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 228  VHLPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            V +PP P LP V +PP P +                P V +PP P LP
Sbjct: 985  VGIPPPPPLPGVGIPPPPPL-----PGVGIPPPPPLPGVGIPPPPPLP 1027



 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 234  LPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            +PP P LP V +PP P +                P V +PP P LP
Sbjct: 943  IPPPPPLPGVGIPPPPPL-----PGVGIPPPPPLPGVGIPPPPPLP 983



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 234  LPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            +PP P LP + +PP P +                P V +PP P LP
Sbjct: 921  IPPPPPLPGMGIPPPPPL-----PGMGIPPPPPLPGVGIPPPPPLP 961



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>P34545:CBP1_CAEEL Protein cbp-1 - Caenorhabditis elegans|
          Length = 2056

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 13/46 (28%)
 Frame = +1

Query: 193  SCPRLSCH-------HFRRCTCHLSPSCPM------LSCHHFRRCT 291
            +C R+SCH       H + C   ++ +CP+      L C+H + CT
Sbjct: 1574 NCRRMSCHKMKRVVQHTKMCKKRINGTCPVCKQLIALCCYHAKHCT 1619



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>Q9NZ56:FMN2_HUMAN Formin-2 - Homo sapiens (Human)|
          Length = 1865

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 228  VHLPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            V +PP P LP   +PP P +                P V +PP P LP
Sbjct: 1292 VGIPPPPPLPGAGIPPPPPL-----PGAGIPPPPPLPGVGIPPPPPLP 1334



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 228  VHLPPKPELPNVELPPFPAVHXXXXXXXXXXXXSAFPEVNLPPKPELP 371
            V +PP P LP V +PP P +                P   +PP P LP
Sbjct: 1325 VGIPPPPPLPGVGIPPPPPL----------------PGAGIPPPPPLP 1356



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>Q91XA9:CHIA_MOUSE Acidic mammalian chitinase precursor - Mus musculus (Mouse)|
          Length = 473

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 226 AGNGGSSTLGSFGNSGWCSSPLDG 155
           +G+GG S+ GS G SG+C+   DG
Sbjct: 410 SGSGGGSSGGSSGGSGFCADKADG 433



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>Q12986:NFX1_HUMAN Transcriptional repressor NF-X1 - Homo sapiens (Human)|
          Length = 1104

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 181 PSYQSC--PRLSCHHFRRCTCHLSPSCPMLSC 270
           P  Q C  PR  C H     CH S  CP+ +C
Sbjct: 835 PCKQPCTTPRADCGHPCMAPCHTSSPCPVTAC 866


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 105,958,474
Number of extensions: 2211775
Number of successful extensions: 5651
Number of sequences better than 10.0: 5
Number of HSP's gapped: 5621
Number of HSP's successfully gapped: 10
Length of query: 212
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 104
Effective length of database: 71,062,579
Effective search space: 7390508216
Effective search space used: 7390508216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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