| Clone Name | FLbaf50c24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC006258.1| Arabidopsis thaliana BAC F18G18 from chromosome V near 60.5 cM, complete sequence Length = 110469 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 504 cttctcttctctttgttcatgt 525 |||||||||||||||||||||| Sbjct: 53746 cttctcttctctttgttcatgt 53725
>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete sequence Length = 192971 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 503 acttctcttctctttgttcatg 524 |||||||||||||||||||||| Sbjct: 99870 acttctcttctctttgttcatg 99849
>emb|CR339054.14| Zebrafish DNA sequence from clone DKEY-151M22 in linkage group 23, complete sequence Length = 184755 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 498 tcttcacttctcttctctttgt 519 |||||||||||||||||||||| Sbjct: 121711 tcttcacttctcttctctttgt 121732
>emb|CR956437.2| Human DNA sequence from clone XX-FW2439FW1777L on chromosome 22, complete sequence Length = 3008 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 547 gtgttgtgtgtctgtgtgatttctgg 572 ||||||||||| |||||||||||||| Sbjct: 940 gtgttgtgtgtttgtgtgatttctgg 915
>emb|AL954842.7| Zebrafish DNA sequence from clone DKEY-33E5 in linkage group 8, complete sequence Length = 169016 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 498 tcttcacttctcttctctttgt 519 |||||||||||||||||||||| Sbjct: 17046 tcttcacttctcttctctttgt 17025
>gb|AC153929.3| Mus musculus 10 BAC RP24-364H18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173752 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tgtgtgtctgtgtgatttctgg 572 |||||||||||||||||||||| Sbjct: 121699 tgtgtgtctgtgtgatttctgg 121720
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 ccgagctgcccaaggtggagc 423 ||||||||||||||||||||| Sbjct: 1151252 ccgagctgcccaaggtggagc 1151272
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 tcacttctcttctctttgttc 521 ||||||||||||||||||||| Sbjct: 2646619 tcacttctcttctctttgttc 2646599 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 aaggttgtcttcacttctcttctct 515 |||||||||| |||||||||||||| Sbjct: 26260866 aaggttgtctccacttctcttctct 26260890
>gb|AC023826.6| Homo sapiens chromosome 16 clone RP11-380E14, complete sequence Length = 196755 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gaggaggagatggctccatcc 161 ||||||||||||||||||||| Sbjct: 44151 gaggaggagatggctccatcc 44171
>gb|AC007597.3|AC007597 Homo sapiens chromosome 16 clone RP11-137H10, complete sequence Length = 192814 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 gaggaggagatggctccatcc 161 ||||||||||||||||||||| Sbjct: 31027 gaggaggagatggctccatcc 31007
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 aaggttgtcttcacttctcttctct 515 |||||||||| |||||||||||||| Sbjct: 73547 aaggttgtctccacttctcttctct 73571
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 tcacttctcttctctttgttc 521 ||||||||||||||||||||| Sbjct: 96394 tcacttctcttctctttgttc 96374
>gb|AC131532.7| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85167 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 ttcacttctcttctctttgtt 520 ||||||||||||||||||||| Sbjct: 31049 ttcacttctcttctctttgtt 31069
>gb|AC189400.1| Brassica rapa subsp. pekinensis clone KBrB056L15, complete sequence Length = 117834 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gttgtgtgtctgtgtgattt 568 |||||||||||||||||||| Sbjct: 52078 gttgtgtgtctgtgtgattt 52097
>ref|XR_002705.1| PREDICTED: Mus musculus similar to ATP-binding cassette, sub-family F (GCN20), member 1 (LOC629369), mRNA Length = 2414 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgctagaggaggagatggct 155 |||||||||||||||||||| Sbjct: 1108 tgctagaggaggagatggct 1127
>ref|XR_004783.1| PREDICTED: Mus musculus similar to ATP-binding cassette, sub-family F (GCN20), member 1 (LOC675478), mRNA Length = 2567 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgctagaggaggagatggct 155 |||||||||||||||||||| Sbjct: 1108 tgctagaggaggagatggct 1127
>ref|XR_002088.1| PREDICTED: Mus musculus similar to ATP-binding cassette, sub-family F (GCN20), member 1 (LOC667852), mRNA Length = 2566 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgctagaggaggagatggct 155 |||||||||||||||||||| Sbjct: 1108 tgctagaggaggagatggct 1127
>ref|NM_113329.1| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase (AT3G24240) mRNA, complete cds Length = 3426 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 40 tcttcacttctcttctcttt 59
>gb|AC118621.6| Mus musculus chromosome 7, clone RP24-63H14, complete sequence Length = 230898 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 ttgtgtgtctgtgtgatttc 569 |||||||||||||||||||| Sbjct: 107109 ttgtgtgtctgtgtgatttc 107090
>gb|AC093351.8| Mus musculus chromosome 7, clone RP23-16L19, complete sequence Length = 239688 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tctttgttcatgtgcttaca 532 |||||||||||||||||||| Sbjct: 201476 tctttgttcatgtgcttaca 201495
>gb|AC112681.12| Mus musculus chromosome 16, clone RP23-272P19, complete sequence Length = 228367 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 104354 tcttcacttctcttctcttt 104335
>gb|AC159646.2| Mus musculus BAC clone RP23-192K23 from chromosome 12, complete sequence Length = 194901 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 acaagagctagctagctaga 37 |||||||||||||||||||| Sbjct: 94983 acaagagctagctagctaga 94964
>gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q11-q13, complete sequence Length = 140374 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgtgtgtctgtgtgatttct 570 |||||||||||||||||||| Sbjct: 35872 tgtgtgtctgtgtgatttct 35853
>gb|AC079906.15| Homo sapiens 12q BAC RP11-618L22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180688 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 152685 tcttcacttctcttctcttt 152666
>gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, complete sequence Length = 140375 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgtgtgtctgtgtgatttct 570 |||||||||||||||||||| Sbjct: 35646 tgtgtgtctgtgtgatttct 35627
>dbj|AK036062.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630031M17 product:nuclear factor of activated T-cells, cytoplasmic 2, full insert sequence Length = 2947 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 ttgtgtgtctgtgtgatttc 569 |||||||||||||||||||| Sbjct: 2319 ttgtgtgtctgtgtgatttc 2338
>gb|AF512555.1| Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) (ERCC1) gene, complete cds Length = 17285 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttcctcattggattgcttct 103 |||||||||||||||||||| Sbjct: 12545 ttcctcattggattgcttct 12526
>gb|AC093062.2| Homo sapiens chromosome 19 clone LLNLR-225C12, complete sequence Length = 8197 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 gtgttgtgtgtctgtgtgat 566 |||||||||||||||||||| Sbjct: 2940 gtgttgtgtgtctgtgtgat 2959
>emb|AL354802.15| Human DNA sequence from clone RP11-54O10 on chromosome 13 Contains part of the TRPC4 gene transient receptor potential cation channel, subfamily C, member 4, complete sequence Length = 171184 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 542 tggtcgtgttgtgtgtctgtgtga 565 |||| ||||||||||||||||||| Sbjct: 109184 tggtagtgttgtgtgtctgtgtga 109207
>emb|AL589879.21| Mouse DNA sequence from clone RP23-38E20 on chromosome 13 Contains the genes for H2b histone family member A, two H2a, two H4 and an H2b histone family member, a serine/threonine protein kinase pseudogene, a novel pseudogene, a novel gene (4930500C15Rik), the gene for a novel KRAB box and C2H2 Zinc Finger containing protein, a ribosomal protein L21 (RPL21) pseudogene, a TU mitochondrial translation elongation factor (tufa) pseudogene, the 5' end of the gene for a novel protein similar to nuclear envelope pore membrane protein POM121 and four CpG islands, complete sequence Length = 182817 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgtgtgtctgtgtgatttct 570 |||||||||||||||||||| Sbjct: 178541 tgtgtgtctgtgtgatttct 178522
>emb|AJ550163.1|ATH550163 Arabidopsis thaliana mRNA for LRR receptor-like kinase 2 (rch2 gene) Length = 3770 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 167 tcttcacttctcttctcttt 186
>emb|AL592215.12| Mouse DNA sequence from clone RP23-172P19 on chromosome 11 Contains two novel genes (4930452L02Rik and B430319H21Rik), the 3' end of the gene for a novel protein (1700019I23Rik), the gene for a novel protein (4933407G07Rik), the Pmp22 gene for peripheral myelin protein and a CpG island, complete sequence Length = 219468 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 gatttctggcgaatcatttgtgtg 587 ||||||||| |||||||||||||| Sbjct: 69008 gatttctggtgaatcatttgtgtg 68985
>gb|AC127279.3| Mus musculus BAC clone RP24-247K4 from chromosome 10, complete sequence Length = 185573 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 taccaaagctgcccaaggtt 206 |||||||||||||||||||| Sbjct: 35039 taccaaagctgcccaaggtt 35058
>gb|AC139353.3| Homo sapiens chromosome 19 clone LLNLR-257F11, complete sequence Length = 38480 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttcctcattggattgcttct 103 |||||||||||||||||||| Sbjct: 27539 ttcctcattggattgcttct 27520
>gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence Length = 110611 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 42656 tcttcacttctcttctcttt 42675
>gb|AY162861.1| Berberis gilgiana PI-2 mRNA, partial cds Length = 786 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aagaatgctagaggaggaga 150 |||||||||||||||||||| Sbjct: 375 aagaatgctagaggaggaga 394
>gb|AY162860.1| Berberis gilgiana PI-1 mRNA, partial cds Length = 793 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aagaatgctagaggaggaga 150 |||||||||||||||||||| Sbjct: 375 aagaatgctagaggaggaga 394
>gb|AF215845.3| Homo sapiens chromosome 8 clone CTD-2542N7 map q11-q13, complete sequence Length = 237705 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgtgtgtctgtgtgatttct 570 |||||||||||||||||||| Sbjct: 172701 tgtgtgtctgtgtgatttct 172682
>dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8 Length = 78921 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 77231 tcttcacttctcttctcttt 77250
>gb|AC092855.39| Mus musculus strain C57BL/6J chromosome 3 clone rp23-49o17, complete sequence Length = 249205 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 tcttcacttctcttctctttgttc 521 ||||| |||||||||||||||||| Sbjct: 92967 tcttctcttctcttctctttgttc 92944
>gb|AC121300.11| Mus musculus chromosome 6, clone RP23-408I12, complete sequence Length = 212218 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 ctctttgttcatgtgcttac 531 |||||||||||||||||||| Sbjct: 196416 ctctttgttcatgtgcttac 196397
>ref|XM_321087.2| Anopheles gambiae str. PEST ENSANGP00000018446 (ENSANGG00000015957), partial mRNA Length = 729 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccgagctgcccaaggtggag 422 |||||||||||||||||||| Sbjct: 407 ccgagctgcccaaggtggag 426
>emb|AJ272583.1|APL272583 Anas platyrhynchos microsatellite DNA, clone D1A6 Length = 447 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 gtgttgtgtgtctgtgtgatttct 570 ||||||||||| |||||||||||| Sbjct: 313 gtgttgtgtgtgtgtgtgatttct 290
>dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-774J1, complete sequence Length = 167901 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 acttctcttctctttgttca 522 |||||||||||||||||||| Sbjct: 4538 acttctcttctctttgttca 4519
>gb|AC130216.4| Mus musculus BAC clone RP23-218G9 from 10, complete sequence Length = 182204 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 taccaaagctgcccaaggtt 206 |||||||||||||||||||| Sbjct: 27416 taccaaagctgcccaaggtt 27397
>gb|AC133079.4| Mus musculus BAC clone RP24-468O18 from 12, complete sequence Length = 176177 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 acaagagctagctagctaga 37 |||||||||||||||||||| Sbjct: 30651 acaagagctagctagctaga 30670
>gb|AC111037.8| Mus musculus chromosome 5, clone RP24-299M10, complete sequence Length = 155488 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 gtgttgtgtgtctgtgtgat 566 |||||||||||||||||||| Sbjct: 36395 gtgttgtgtgtctgtgtgat 36376
>emb|AL954720.14| Mouse DNA sequence from clone RP23-58C21 on chromosome X, complete sequence Length = 28204 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgctagaggaggagatggct 155 |||||||||||||||||||| Sbjct: 18655 tgctagaggaggagatggct 18674
>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete sequence Length = 198761 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tcctcgagttccagttcctg 470 |||||||||||||||||||| Sbjct: 36971 tcctcgagttccagttcctg 36990
>emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chromosome X, complete sequence Length = 130107 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 tcttcacttctcttctcttt 517 |||||||||||||||||||| Sbjct: 72914 tcttcacttctcttctcttt 72895
>gb|M63796.1|HUMMMDA Human DNA from cosmid MMDA from chromosome 19q13.3 (obtained by automated sequence analysis) Length = 37314 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ttcctcattggattgcttct 103 |||||||||||||||||||| Sbjct: 11876 ttcctcattggattgcttct 11895
>dbj|AP000997.1| Homo sapiens DNA, chromosome 11q23.2, clone:194K16, the region having tumor suppressor activity, complete sequence Length = 130448 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 acttctcttctctttgttca 522 |||||||||||||||||||| Sbjct: 23223 acttctcttctctttgttca 23242 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 104,637,321 Number of extensions: 6025598 Number of successful extensions: 288747 Number of sequences better than 10.0: 52 Number of HSP's gapped: 288747 Number of HSP's successfully gapped: 53 Length of query: 637 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 615 Effective length of database: 18,508,616,841 Effective search space: 11382799357215 Effective search space used: 11382799357215 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)