>Q8S3N1:SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 309
 Score =  136 bits (342), Expect = 7e-32
 Identities = 62/74 (83%), Positives = 68/74 (91%)
 Frame = +3

Query: 3   GANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 182
           G +GRK  WEGTPRS+RDSHRKVRDSHDGLIIQRNMALFFSGG++KELKLRVTGRIWKEQ
Sbjct: 235 GGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 294

Query: 183 QNPDSGACIPNLFS 224
           QNPDSG CI ++ S
Sbjct: 295 QNPDSGVCITSMCS 308

>Q9STN8:SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 327

 Score =  132 bits (332), Expect = 1e-30
 Identities = 62/74 (83%), Positives = 68/74 (91%)
 Frame = +3

Query: 3   GANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 182
           G +GRK+ WEGTPRSIRDSHRKVRDS+DGLIIQRNMALFFSGG+RKELKLRVTG+IWKEQ
Sbjct: 253 GGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQ 312

Query: 183 QNPDSGACIPNLFS 224
            +PDSG  IPNL S
Sbjct: 313 HSPDSGLSIPNLSS 326

>Q84JL3:SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 326

 Score =  130 bits (328), Expect = 3e-30
 Identities = 63/74 (85%), Positives = 66/74 (89%), Gaps = 2/74 (2%)
 Frame = +3

Query: 3   GANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 182
           G  GRK+IWEGTPRS+RDSHRKVRDSHDGLIIQRNMALFFSGG+RKELKLRVTGRIWKEQ
Sbjct: 252 GGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 311

Query: 183 Q--NPDSGACIPNL 218
           Q      GACIPNL
Sbjct: 312 QQSGEGGGACIPNL 325

>Q9M2P4:SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 308

 Score =  106 bits (265), Expect = 6e-23
 Identities = 48/60 (80%), Positives = 56/60 (93%)
 Frame = +3

Query: 3   GANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 182
           GA+GRK+ W+G PRSIRDSHRKVRDS DGLII RN+AL+FSGG+R+ELKLRVTGRIWKE+
Sbjct: 249 GAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308

>P93748:SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 305

 Score =  100 bits (250), Expect = 3e-21
 Identities = 45/60 (75%), Positives = 54/60 (90%)
 Frame = +3

Query: 3   GANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 182
           GA+ RK+ W+G PRSIRDSHRKVRDS DGLII RN+AL+FSG +++ELKLRVTGRIWKE+
Sbjct: 246 GAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305

>Q3JAF6:HTPG_NITOC Chaperone protein htpG - Nitrosococcus oceani (strain ATCC 19707 /|
           NCIMB 11848)
          Length = 634

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 14  QEDDMGGHAPEHPGQSPQSA*--QPRRPHNPAEHGTLLLRRGEERAETAGDWPHL 172
           ++ DM G+      ++ Q A   QP    NPA H  +   +GEE  E  GDW HL
Sbjct: 549 EQHDMSGYLERLLKEAGQQAPHIQPILELNPA-HPIIARLKGEESEENFGDWAHL 602

>Q7SYL3:SIAH2_DANRE E3 ubiquitin-protein ligase Siah2 - Danio rerio (Zebrafish)|
           (Brachydanio rerio)
          Length = 331

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 9   NGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFS 125
           N R++ WE TPRSI D       + D L+   ++A  F+
Sbjct: 279 NRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTSIAHLFA 317

>Q9UPU5:UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 - Homo sapiens (Human)|
          Length = 1870

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 14   QEDDMGGHAPEHPGQSPQSA*QPRRPHNP-AEHGTLLLRRGEER 142
            + +D+   AP  P  SPQS+ +P RP+N      T L+++GE++
Sbjct: 1312 EAEDLSLSAPSSPEISPQSSPRPHRPNNDRLSILTKLVKKGEKK 1355

>Q9NT68:TEN2_HUMAN Teneurin-2 - Homo sapiens (Human)|
          Length = 2774

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +3

Query: 366 SLGWLVLLSRTAREAC---WKSHGDHSPLTGLCSVIPKCLSCHCTLMI**CMIVFSLFET 536
           S GW  L    AR  C      HG + P TGLCS  P  +   C++ +  C +       
Sbjct: 691 SPGWGGLNCELARVQCPDQCSGHGTYLPDTGLCSCDPNWMGPDCSVEV--CSVDCGTHGV 748

Query: 537 CI 542
           CI
Sbjct: 749 CI 750

>Q965X6:SIA1_CAEEL E3 ubiquitin-protein ligase sia-1 - Caenorhabditis elegans|
          Length = 339

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 6   ANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGERKELKLRVT 161
           A+ R+M WE TPRSI +         D L    N A  F+  E   L + VT
Sbjct: 281 ASRRRMSWEATPRSIHEGVVVAIQQSDCLAFDSNAAQLFA--ENGNLGINVT 330

>P97260:SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating|
           protein - Cricetulus griseus (Chinese hamster)
          Length = 1276

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11  WQE-DDMGGHAPEHPGQSPQSA*QPRRPHNPAEHG 112
           W+   D G  +PE PG+SP    +PR P  PA  G
Sbjct: 833 WERLSDGGKTSPEEPGESPPLRHRPRGPPQPALFG 867

>Q7TNF8:RIMB1_MOUSE Peripheral-type benzodiazepine receptor-associated protein 1 - Mus|
            musculus (Mouse)
          Length = 1846

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +2

Query: 26   MGGHAPEHPGQSPQSA*QPRRPHNPAEHGTLLLRRGEERAET-------AGDWPHLEG 178
            +GG+     G SP+     +RP +P EH + LL  G  +A          G  P +EG
Sbjct: 1391 VGGNGRRRGGGSPEKLPNRKRPQDPREHCSRLLGNGGPQASARPVPPRERGSLPVIEG 1448

>Q26264:SM41_HEMPU 41 kDa spicule matrix protein precursor - Hemicentrotus|
           pulcherrimus (Sea urchin)
          Length = 407

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 2   GCQWQEDDMGGHAPEHPGQSPQSA*QPRRPHNP 100
           G   Q+  MGG  P   GQ P +   P  P+NP
Sbjct: 352 GMGGQQPGMGGRQPGMGGQQPNNPNNPNNPNNP 384

>Q01642:MS84A_DROME Male-specific sperm protein Mst84Da - Drosophila melanogaster|
           (Fruit fly)
          Length = 63

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 81  GCHALCGDCPGCSGACPPISSSCHWHP 1
           GC   CG C GC   C   SS C   P
Sbjct: 35  GCGPCCGPCGGCGPCCGGTSSFCGCGP 61

>Q3UTQ8:CDKL5_MOUSE Cyclin-dependent kinase-like 5 - Mus musculus (Mouse)|
          Length = 938

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -2

Query: 531 QTTRIQSYITRSLKYNDMTDI*ESQNTGQSEENDHHVISSRLHVLSLI--TTPTTPKNTE 358
           Q++R  SY T++  +  ++D     N  ++        +SR    S +   +PT+P  T 
Sbjct: 475 QSSRSPSYRTKAKSHGALSDSKSVSNLSEARAQITETNTSRYFPSSCLDLNSPTSPTPTR 534

Query: 357 HVTTKWLKKRKGTN 316
           H  T+ L    G N
Sbjct: 535 HTDTRTLLSPSGRN 548


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 105,351,316
Number of extensions: 2259472
Number of successful extensions: 6503
Number of sequences better than 10.0: 15
Number of HSP's gapped: 6467
Number of HSP's successfully gapped: 15
Length of query: 208
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 100
Effective length of database: 71,062,579
Effective search space: 7106257900
Effective search space used: 7106257900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)