ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf50c07 |
|---|---|
| Clone Library Name | barley_pub |
>O74503:UAF30_SCHPO Upstream activation factor subunit spp27 - Schizosaccharomyces| pombe (Fission yeast) Length = 233 Score = 80.9 bits (198), Expect = 1e-14 Identities = 36/79 (45%), Positives = 54/79 (68%) Frame = +1 Query: 517 KLCSISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSI 696 K +SP L EF+G + +R + VKKLW YI+ ++LQDP+++R ILCD+ LK +F V+++ Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTL 178 Query: 697 DMFQMNKALTKHIWPLDSD 753 MF MNK LT + + D Sbjct: 179 HMFTMNKYLTNLMTKIPDD 197 Score = 74.7 bits (182), Expect = 8e-13 Identities = 39/100 (39%), Positives = 58/100 (58%) Frame = +1 Query: 814 QKRDRSEGNKQKXXXXXXXXXXXXXXXXXDDLAKFIGTGESMLSRSDVVKRMWVYIKENN 993 +K D EG K+K LA+F+G + LSR VK++W YIK ++ Sbjct: 96 RKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQ--LSRPQTVKKLWEYIKAHD 153 Query: 994 LQDPSDRRKIICDEKLKDLFQVESFTGFTVSKLLNPHFTK 1113 LQDP+D+R I+CD+KLK +F+V++ FT++K L TK Sbjct: 154 LQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLMTK 193
>Q05024:YM74_YEAST Uncharacterized protein YMR233W - Saccharomyces cerevisiae (Baker's| yeast) Length = 226 Score = 80.1 bits (196), Expect = 2e-14 Identities = 37/73 (50%), Positives = 54/73 (73%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 +S LQ+F+G+ E RT+VVK +W YI+E++LQ+P +RR+ILCDE ++ IF + MF Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFS 184 Query: 709 MNKALTKHIWPLD 747 MNK LTKH++ D Sbjct: 185 MNKLLTKHLFNPD 197 Score = 66.2 bits (160), Expect = 3e-10 Identities = 33/66 (50%), Positives = 49/66 (74%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQVESFTGFTVS 1086 L KF+G+ E L R+ VVK +W YIKE++LQ+P DRR+I+CDEK++ +F + T F+++ Sbjct: 130 LQKFLGSEE--LPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFSMN 186 Query: 1087 KLLNPH 1104 KLL H Sbjct: 187 KLLTKH 192
>Q08747:UAF30_YEAST Upstream activation factor subunit UAF30 - Saccharomyces cerevisiae| (Baker's yeast) Length = 228 Score = 73.9 bits (180), Expect = 1e-12 Identities = 34/74 (45%), Positives = 53/74 (71%) Frame = +1 Query: 514 TKLCSISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNS 693 T+ ++S +L +G E RTEVV++LWAYI+ +NLQ+P+N+++ILCDE L+ I S Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG-KS 179 Query: 694 IDMFQMNKALTKHI 735 +MF+M+K L H+ Sbjct: 180 TNMFEMHKILASHM 193 Score = 62.4 bits (150), Expect = 4e-09 Identities = 29/64 (45%), Positives = 47/64 (73%) Frame = +1 Query: 928 GESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQVESFTGFTVSKLLNPHF 1107 GE L+R++VV+R+W YIK +NLQ+P+++++I+CDEKL +L +S F + K+L H Sbjct: 135 GEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKL-ELILGKSTNMFEMHKILASHM 193 Query: 1108 TKAK 1119 T+ K Sbjct: 194 TEPK 197
>Q61466:SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 1 - Mus musculus (Mouse) Length = 476 Score = 46.6 bits (109), Expect = 2e-04 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 + P L +G R +++ LW YI+ + LQDP R +LCD+ L++IF + + Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSE 317 Query: 709 MNKALTKHIWP 741 + + L + P Sbjct: 318 IPQRLHALLMP 328 Score = 41.2 bits (95), Expect = 0.010 Identities = 17/50 (34%), Positives = 32/50 (64%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQ 1056 LA+ +G +R +++ +W YIK + LQDP +R ++CD+ L+ +F+ Sbjct: 262 LARLLGIHTQ--TRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE 309
>Q96GM5:SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 1 - Homo sapiens (Human) Length = 476 Score = 45.8 bits (107), Expect = 4e-04 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 + P L +G R +++ LW YI+ + LQDP R ++CD+ L++IF + + Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 317 Query: 709 MNKALTKHIWP 741 + + L + P Sbjct: 318 IPQRLHALLMP 328 Score = 42.0 bits (97), Expect = 0.006 Identities = 18/50 (36%), Positives = 32/50 (64%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQ 1056 LA+ +G +R +++ +W YIK + LQDP +R +ICD+ L+ +F+ Sbjct: 262 LARLLGIHTQ--TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFE 309
>Q9FT92:Y5843_ARATH Uncharacterized protein At5g08430 - Arabidopsis thaliana (Mouse-ear| cress) Length = 553 Score = 43.9 bits (102), Expect = 0.002 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +1 Query: 937 MLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQVESFTGFTVSKLLNPHF 1107 M+SR DV + YI + L DPS+++K++CD++L LF + V LL H+ Sbjct: 51 MISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHY 107 Score = 40.0 bits (92), Expect = 0.022 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 571 ARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQMNKALTKH 732 +R +V + YI + L DPSN++K++CD+ L +F +I ++ L KH Sbjct: 53 SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 106
>Q9FMT4:Y5417_ARATH Uncharacterized protein At5g14170 - Arabidopsis thaliana (Mouse-ear| cress) Length = 534 Score = 43.1 bits (100), Expect = 0.003 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 +S AL + +G R ++ +W Y++ LQ+P++ CD L+K+F + Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTM 380 Query: 709 MNKALTKHIWP 741 +++ ++ H+ P Sbjct: 381 VSQKISHHLSP 391 Score = 35.8 bits (81), Expect = 0.42 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +1 Query: 928 GESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLFQVESFTGFTVSKLLNPHF 1107 G + +R ++ +W Y+K LQ+P+D CD L+ +F E VS+ ++ H Sbjct: 330 GIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHL 389 Query: 1108 T 1110 + Sbjct: 390 S 390
>Q6P9Z1:SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 3 - Mus musculus (Mouse) Length = 483 Score = 42.0 bits (97), Expect = 0.006 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 + P L +G +R+ +V+ LW Y++ N LQD ++ I D+ ++IF+ + + Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSE 324 Query: 709 MNKALTKHIWPLD 747 + + LT + P D Sbjct: 325 IPQRLTALLLPPD 337 Score = 35.8 bits (81), Expect = 0.42 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 LA+ +G SRS +V+ +W Y+K N LQD D+ I D+ + +F Sbjct: 269 LARLLGLHTQ--SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF 315
>Q6STE5:SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 3 - Homo sapiens (Human) Length = 483 Score = 42.0 bits (97), Expect = 0.006 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFNVNSIDMFQ 708 + P L +G +R+ +V+ LW Y++ N LQD ++ I D+ ++IF+ + + Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSE 324 Query: 709 MNKALTKHIWPLD 747 + + LT + P D Sbjct: 325 IPQRLTALLLPPD 337 Score = 35.8 bits (81), Expect = 0.42 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 LA+ +G SRS +V+ +W Y+K N LQD D+ I D+ + +F Sbjct: 269 LARLLGLHTQ--SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF 315
>O54772:SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 2 - Rattus norvegicus (Rat) Length = 456 Score = 40.0 bits (92), Expect = 0.022 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFN 684 + P L +G R +++ LW YI+ N LQD R I C+ ++IF+ Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 289 Score = 36.6 bits (83), Expect = 0.24 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 LA+ +G +R+ +++ +W+YIK N LQD +R I C+ + +F Sbjct: 242 LARLLGVHTQ--TRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF 288
>Q99JR8:SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 2 - Mus musculus (Mouse) Length = 456 Score = 40.0 bits (92), Expect = 0.022 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFN 684 + P L +G R +++ LW YI+ N LQD R I C+ ++IF+ Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 289 Score = 36.6 bits (83), Expect = 0.24 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 LA+ +G +R+ +++ +W+YIK N LQD +R I C+ + +F Sbjct: 242 LARLLGVHTQ--TRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF 288
>Q92925:SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily D member 2 - Homo sapiens (Human) Length = 456 Score = 40.0 bits (92), Expect = 0.022 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 529 ISPALQEFVGASECARTEVVKKLWAYIRENNLQDPSNRRKILCDENLKKIFN 684 + P L +G R +++ LW YI+ N LQD R I C+ ++IF+ Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 289 Score = 36.6 bits (83), Expect = 0.24 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 LA+ +G +R+ +++ +W+YIK N LQD +R I C+ + +F Sbjct: 242 LARLLGVHTQ--TRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF 288
>Q5UQ74:YR508_MIMIV Putative SWIB domain-containing protein R508 - Mimivirus| Length = 335 Score = 34.3 bits (77), Expect = 1.2 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 907 LAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEKLKDLF 1053 L + + +LSRS V + M+ Y +N + + +R+II + K+K LF Sbjct: 255 LKDLLKINDDVLSRSKVTELMYKYFTDNKMYNSKTKREIIPNSKIKKLF 303
>Q9P4S5:CCA1_CANGA tRNA nucleotidyltransferase, mitochondrial precursor - Candida| glabrata (Yeast) (Torulopsis glabrata) Length = 531 Score = 32.7 bits (73), Expect = 3.5 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +1 Query: 901 DDLAKFIGTGESMLSRSDVVKRMWVYIKENNLQDPSDRRKIICDEK 1038 D K+I +++++ D R W YI+E NLQD SD+ I D K Sbjct: 438 DQYLKYISRKDNVVNIIDKYDRFWNYIQEQNLQD-SDKMVPIIDGK 482
>Q6P8H8:ALG8_MOUSE Probable dolichyl pyrophosphate Glc1Man9GlcNAc2| alpha-1,3-glucosyltransferase - Mus musculus (Mouse) Length = 526 Score = 32.7 bits (73), Expect = 3.5 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = -1 Query: 761 TGPSESNGQMCLVKALFIWNISIELTLKIFFRFSSHRIFLLLLGSCKLFSRIYAQSFLTT 582 TG + ++ L +WN + + I F+++ LLLL +LF + + + L Sbjct: 133 TGKDLTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLSGLLLLSIARLFQKRHIEGALLF 192 Query: 581 SVLAH 567 +VL H Sbjct: 193 AVLLH 197
>O91087:NEF_HV1YF Protein Nef - Human immunodeficiency virus type 1 (isolate YBF30| group N) (HIV-1) Length = 212 Score = 32.3 bits (72), Expect = 4.6 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 1229 DSYMFHGYGLLQNKKNKTTRPSLRVPRIGGWC 1134 D +M+H G+L + N T P +R P GWC Sbjct: 117 DLWMYHTQGILPDWHNYTPGPGIRYPVTFGWC 148 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 177,579,102 Number of extensions: 3683529 Number of successful extensions: 9489 Number of sequences better than 10.0: 16 Number of HSP's gapped: 9487 Number of HSP's successfully gapped: 28 Length of query: 444 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 328 Effective length of database: 68,868,219 Effective search space: 22588775832 Effective search space used: 22588775832 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
