>LOC_Os05g25850:12005.t02240:unspliced-genomic superoxide dismutase, mitochondrial precursor, putative, expressed|
          Length = 4786
 Score =  156 bits (336), Expect(2) = 4e-38
 Identities = 62/68 (91%), Positives = 65/68 (95%)
 Frame = +1 / +2

                                                                       
Query: 136 LPDLPYDYGALEPAVSGEIMRLHHQKHHATYVANYNKALEQLDAAVGKGDASGVVHLQSA 315
           LPDLPYDYGALEPA+SGEIMRLHHQKHHATYVANYNKALEQLDAAV KGDA  +VHLQSA
Sbjct: 179 LPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSA 358

                   
Query: 316 IKFNGGGK 339
           IKFNGGG+
Sbjct: 359 IKFNGGGE 382



 Score = 22.6 bits (43), Expect(2) = 4e-38
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3 / +1

                   
Query: 51  SHGAPHVG 74
           SHGAPH G
Sbjct: 79  SHGAPHAG 102



 Score = 50.6 bits (104), Expect(3) = 5e-15
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -1 / -2

                             
Query: 227 *VAWCFWWCRRMISPETA 174
           *VAWCFWWCRRMISPE A
Sbjct: 270 *VAWCFWWCRRMISPEMA 217



 Score = 34.5 bits (69), Expect(3) = 5e-15
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -2 / -3

                         
Query: 91  LGFSSWPTCGAPWL 50
           LGFSS P CGAPWL
Sbjct: 119 LGFSSRPACGAPWL 78



 Score = 33.6 bits (67), Expect(3) = 5e-15
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -1 / -2

                        
Query: 335 PPPLNLMALWRWT 297
           PPPLNLMALWR T
Sbjct: 378 PPPLNLMALWRCT 340



 Score = 33.6 bits (67), Expect(3) = 2e-07
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3 / -1

                         
Query: 201 QAHDLAGDGRLQRA 160
           QAHDL GDGRLQRA
Sbjct: 244 QAHDLPGDGRLQRA 203



 Score = 32.2 bits (64), Expect(3) = 2e-07
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -3 / -1

                               
Query: 336 TAAVEFDGALEVDDAGRVPL 277
           T+AVE DGALEV D G V L
Sbjct: 379 TSAVELDGALEVHDGGGVAL 320



 Score = 26.3 bits (51), Expect(3) = 2e-07
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -3 / -1

                        
Query: 90  *GSLRGQRAERHG 52
           *G  RGQRAERHG
Sbjct: 118 *GFPRGQRAERHG 80



 Score = 29.9 bits (59), Expect(3) = 0.044
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3 / +1

                     
Query: 189 DHAPAPPEAP 218
           DHAPAPPEAP
Sbjct: 232 DHAPAPPEAP 261



 Score = 27.2 bits (53), Expect(3) = 0.044
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3 / +1

                             
Query: 1032 LVLLGSYHF*VFRWWGF 1082
            L +LGS HF* FRW+ F
Sbjct: 580  LGVLGSSHF*GFRWFWF 630



 Score = 26.3 bits (51), Expect(3) = 0.044
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2 / +3

                          
Query: 296 SSTSRAPSNSTAAVK 340
           S TSRAPS+STA V+
Sbjct: 339 SCTSRAPSSSTAEVR 383

>LOC_Os07g46450:12007.t04281:unspliced-genomic rho GTPase activator, putative, expressed|
          Length = 9343

 Score = 35.9 bits (72), Expect = 0.61
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1 / +2

                                                          
Query: 559  CPLISVFSETSLNSSYFSDSAARDECFTSSCSPAASLNLVVVCSSV 696
            C ++ V+S   + S  F ++A+ +EC + SCS +     VV C S+
Sbjct: 9086 CDILFVYSW*RILSFSFVEAASENECISLSCSSSICFCFVVACGSL 9223

>LOC_Os11g39410:12011.t03483:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2303

 Score = 34.1 bits (68), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1 / +3

                                       
Query: 950 VKKRHQHHLHTSDHSIWTNHTRSAARGP 867
           ++  HQHH+H   HS      R+AA GP
Sbjct: 351 IQTMHQHHIHRKQHS*KKTKERTAAAGP 434

>LOC_Os11g32380:12011.t02834:unspliced-genomic expressed protein|
          Length = 1214

 Score = 34.1 bits (68), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3 / -2

                                                   
Query: 885  SRVVRPDAVIASMEVMLMSFFYKLMWSYCVCLLILIYEE 1001
            S+V R  A     + +L+  F  +MW  C C+LIL+Y E
Sbjct: 1156 SQVKRKTATPH*SKAVLLVDFCCVMWKSCKCILILVYSE 1040

>LOC_Os10g11980:12010.t00988:unspliced-genomic transferase family protein, expressed|
          Length = 5561

 Score = 33.6 bits (67), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2 / -3

                                
Query: 848 ELSLSNLDPLLRFSCGSSRCC 910
           EL+L  +DP  R SCG S CC
Sbjct: 318 ELNLPTVDPCARLSCGRSICC 256

>LOC_Os03g11360:12003.t00936:unspliced-genomic LAP4 protein, putative, expressed|
          Length = 3561

 Score = 27.6 bits (54), Expect(2) = 3.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3 / -2

                                   
Query: 84   SLRGQRAERHGWLCFGLWCACVC 16
            S+R ++  RH  L F   C CVC
Sbjct: 2627 SIRDRKVRRHRALMFVCVCVCVC 2559



 Score = 22.6 bits (43), Expect(2) = 3.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3 / -3

                    
Query: 30   CACVCAWR 7
            C CVC W+
Sbjct: 2575 CVCVCVWQ 2552

>LOC_Os12g04830:12012.t00370:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 5781

 Score = 33.1 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1 / -3

                          
Query: 542  HWSQGCGRSNPHLS 501
            HWSQGCG ++PH S
Sbjct: 5623 HWSQGCGLASPHKS 5582

>LOC_Os01g72170:12001.t06506:unspliced-genomic glutathione S-transferase, putative, expressed|
          Length = 1034

 Score = 33.1 bits (66), Expect = 4.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2 / +2

                                          
Query: 299 STSRAPSNSTAAVKTLSPLDAPLNSFGCSLR 391
           ST R+PS+STA   T  P  +PL+S   S R
Sbjct: 368 STRRSPSSSTATTTTAPPSASPLSSSSTSTR 460

>LOC_Os11g40500:12011.t03591:unspliced-genomic mitochondrial inner membrane protease subunit 1, putative, expressed|
          Length = 3192

 Score = 32.7 bits (65), Expect = 5.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1 / -2

                                        
Query: 536  SQGCGRSNPHLSKFFGLHHSADTRLVLD 453
            +Q C + NP L KF G H  A  R+VLD
Sbjct: 1991 NQSCTQRNPELLKFSGQHIGALPRVVLD 1908

>LOC_Os06g05110:12006.t00400:unspliced-genomic superoxide dismutase, chloroplast, putative, expressed|
          Length = 4147

 Score = 32.7 bits (65), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1 / +3

                                          
Query: 163  ALEPAVSGEIMRLHHQKHHATYVANYNKAL 252
            ALEP +S   + LH  KH   YV + NK L
Sbjct: 1179 ALEPYISKRTVELHWGKHQQDYVDSLNKQL 1268

>LOC_Os02g19830:12002.t01775:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 4586

 Score = 32.7 bits (65), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1 / -3

                                   
Query: 539  WSQGCGRSNPHLSKFFGLHHSAD 471
            WSQGCG ++PH S   G     D
Sbjct: 4401 WSQGCGLASPHRSDLLGFRCDPD 4333

>LOC_Os01g29530:12001.t02639:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 5974

 Score = 31.3 bits (62), Expect(2) = 5.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1 / -3

                          
Query: 542  HWSQGCGRSNPHLS 501
            HWSQGC  ++PH+S
Sbjct: 5816 HWSQGCELASPHMS 5775



 Score = 24.4 bits (47), Expect(2) = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3 / -2

                          
Query: 45   CFGLWCACVCAWRI 4
            C+ LWC C C   I
Sbjct: 1635 CYILWCICWCCCSI 1594

>LOC_Os08g41570:12008.t03886:unspliced-genomic hypothetical protein|
          Length = 3055

 Score = 32.2 bits (64), Expect = 7.7
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2 / +2

                                                         
Query: 365 LNSFGCSLRFVRMLP*IHSYSPLMRGLVRYQVPDEYLQSDEDQKIY 502
           L S G ++ F  M   IHS++ L  GL RYQ   + L  DE   +Y
Sbjct: 758 LVSLGTTIHFYLMNTAIHSFNTLSSGLHRYQSLCQGLLKDEYAILY 895

>LOC_Os06g49010:12006.t04587:unspliced-genomic squamosa promoter-binding-like protein 11, putative, expressed|
          Length = 5156

 Score = 32.2 bits (64), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1 / -2

                                           
Query: 929  HLHTSDHSIWTNHTRSAARGPNLTKTARIRK 837
            HLH  DHS WT+HT S     ++  +  I K
Sbjct: 2137 HLHLLDHSRWTSHT*SCRGALDILPSTNIFK 2045

>LOC_Os06g07630:12006.t00645:unspliced-genomic 26S protease regulatory subunit 6A, putative, expressed|
          Length = 4671

 Score = 32.2 bits (64), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3 / +3

                                  
Query: 834  WFSNSSCLCQIWTPCCASRVVR 899
            W +  SCLC+ W  C A+R  R
Sbjct: 3789 WSATESCLCRSWYACTAARCYR 3854

>LOC_Os03g07830:12003.t00644:unspliced-genomic dehydration-responsive element-binding protein 2F, putative|
          Length = 957

 Score = 32.2 bits (64), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3 / -2

                                           
Query: 825 EEIWFSNSSCLCQIWTPCCASRVVRPDAVIAS 920
           ++ + S+ S  C  WT CCA R+ RP A  A+
Sbjct: 437 DDEFLSSCSLWCMTWTLCCALRLRRP*AGTAA 342


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 449,397,036
Number of extensions: 6599747
Number of successful extensions: 29899
Number of sequences better than 10.0: 16
Length of query: 416
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 366
Effective length of database: 52,799,986
Effective search space: 19324794876
Effective search space used: 19324794876
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)