ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf58l06 |
|---|---|
| Clone Library Name | barley_pub |
>Q55717:Y639_SYNY3 Uncharacterized mscS family protein slr0639 - Synechocystis sp.| (strain PCC 6803) Length = 296 Score = 39.3 bits (90), Expect = 0.083 Identities = 28/106 (26%), Positives = 46/106 (43%) Frame = +3 Query: 1686 IIVFVLWLLILGIATTNFLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVMHPFDVGDRCX 1865 ++ FVL L LGI T++ + L + L + +L + I+ L + + F VG+R Sbjct: 85 VVFFVLCLAQLGIQTSSLVALLGASTLAIGLALQGSLANVAGGIL-LVLFNYFRVGERIE 143 Query: 1866 XXXXXXXXXXMNILTTVFLRYDNLKIYYPNNVLASIPIKNFYRSPD 2003 + IL+T YDN + PN + I N P+ Sbjct: 144 VAGIEGIVESIEILSTTICTYDNRLVTIPNKQIIENNIINHVGKPE 189
>Q95TN4:COG4_DROME Putative conserved oligomeric Golgi complex component 4 - Drosophila| melanogaster (Fruit fly) Length = 776 Score = 39.3 bits (90), Expect = 0.083 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 15/203 (7%) Frame = +3 Query: 984 YFDRIQASL--------FNQYVTETLSGP---QLVDHATVFAQVSDLHLHSVMPTKNLSG 1130 Y DR+ A L NQ + E G L+D ++ D + +++ N + Sbjct: 246 YADRLTAILENFARVVEVNQPIIEAFYGQASSSLIDMVSILQHECDTEVKNLLMEFNKNR 305 Query: 1131 QVSFRTSSVSMSKQQGQGSKKLTSKEKRQ--HQTADEGISIDKLNRLNRRNVSAWNMKRL 1304 Q+ +R+ V+ S Q+ G L S + H G S+DKLN + A Sbjct: 306 QIQYRSKQVNESTQRSAGGGNLGSNSIQALGHYRKPSGGSVDKLNPKEIDAIIAEITVMH 365 Query: 1305 MKIIRFGTLTTIDEQIKQATGEGDLSATHIRSEYESHMAAKKIFHNVAKHRSKYIYLADL 1484 ++ + Q+ T + I YE M + + + S Y+ L Sbjct: 366 ARVELYFRFMRRRLQVHVETCVPEKEQFDIMERYEKIMKNSDLRRQMQEILSTYLLLE-- 423 Query: 1485 MHFMRQEEAIKA--MDLFEGGQE 1547 + +E +KA +D +E GQ+ Sbjct: 424 -RYFMEESVLKAIGLDTYESGQQ 445
>O25170:Y415_HELPY Uncharacterized mscS family protein HP_0415 - Helicobacter pylori| (Campylobacter pylori) Length = 623 Score = 38.5 bits (88), Expect = 0.14 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Frame = +3 Query: 1581 WMVNAFRERKALALTLN-DTKIAVSKLNQMTNVVGGIIVFVLWLLIL-------GIATTN 1736 W+V A + AL N TK + ++ N++ ++ F+++++ L G + Sbjct: 332 WLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSA 391 Query: 1737 FLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVMHPFDVGDRCXXXXXXXXXXXMNILTTV 1916 + L L + D L A F A V L + + F GD M + T Sbjct: 392 IIASLGIGGLAVALAVKDVL-ANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTT 450 Query: 1917 FLRYDNLKIYYPNNVLASIPIKNFYR 1994 +DN + PN+ LA PI+N+ R Sbjct: 451 IRAFDNALLSVPNSELAGKPIRNWSR 476
>Q9ZKG7:Y415_HELPJ Uncharacterized mscS family protein jhp_0969 - Helicobacter pylori| J99 (Campylobacter pylori J99) Length = 623 Score = 38.5 bits (88), Expect = 0.14 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Frame = +3 Query: 1581 WMVNAFRERKALALTLN-DTKIAVSKLNQMTNVVGGIIVFVLWLLIL-------GIATTN 1736 W+V A + AL N TK + ++ N++ ++ F+++++ L G + Sbjct: 332 WLVIALFKGYGEALVTNVATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSA 391 Query: 1737 FLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVMHPFDVGDRCXXXXXXXXXXXMNILTTV 1916 + L L + D L A F A V L + + F GD M + T Sbjct: 392 IIASLGIGGLAVALAVKDVL-ANFFASVILLLDNSFSQGDWIVCGEVEGTVVEMGLRRTT 450 Query: 1917 FLRYDNLKIYYPNNVLASIPIKNFYR 1994 +DN + PN+ LA PI+N+ R Sbjct: 451 IRAFDNALLSVPNSELAGKPIRNWSR 476
>P42658:DPP6_HUMAN Dipeptidyl aminopeptidase-like protein 6 - Homo sapiens (Human)| Length = 865 Score = 35.8 bits (81), Expect = 0.91 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +3 Query: 435 PSWRWSGPIDGEEEDPFVDEDIPDDFNLKRAKLGALIILQWVSLVLTVGALACSASIRVL 614 P +++ G DG+EED V + P N K + L+IL SL++T L A L Sbjct: 67 PRFQYQGRSDGDEEDELVGSN-PPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDNSL 125 Query: 615 SKKK 626 S+KK Sbjct: 126 SQKK 129
>O28726:Y1546_ARCFU Uncharacterized mscS family protein AF_1546 - Archaeoglobus fulgidus| Length = 283 Score = 35.4 bits (80), Expect = 1.2 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Frame = +3 Query: 1686 IIVFVLWLLILGIATTNFLVFLSSPFLVAIIVFGDTLKAIFEAIV---FLFVMHPFDVGD 1856 I+ F+ L LG+ + LV + IV G +++ +V FL P +GD Sbjct: 68 IVAFIAVLPALGLDLSGLLVAGG----ITGIVLGFASQSVVANLVSGIFLISEKPIKIGD 123 Query: 1857 RCXXXXXXXXXXXMNILTTVFLRYDNLKIYYPNNVLASIPIKNF 1988 + +NIL+T+ YD L + PN + + I N+ Sbjct: 124 QVNIDGVAGFVEDVNILSTIIRTYDGLYVRIPNEKVFTSNITNY 167
>O52401:MSCS_EDWIC Small-conductance mechanosensitive channel - Edwardsiella ictaluri| Length = 286 Score = 35.0 bits (79), Expect = 1.6 Identities = 30/108 (27%), Positives = 43/108 (39%) Frame = +3 Query: 1716 LGIATTNFLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVMHPFDVGDRCXXXXXXXXXXX 1895 LG+ TT+ + L + L + +L F A V L + PF G+ Sbjct: 89 LGVQTTSVIAVLGAAGLAVGLALQGSLSN-FAAGVLLVLFRPFRAGEVVDLGGVTGTVRE 147 Query: 1896 MNILTTVFLRYDNLKIYYPNNVLASIPIKNFYRSPDMGDGIDFYIHVA 2039 + I +T DN I PN + + I NF R P ID + VA Sbjct: 148 VQIFSTTLATADNKVIVVPNGKIIAGNIINFSREPKR--RIDIIVGVA 193
>P0AEB5:YNAI_ECOLI MscS family inner membrane protein ynaI - Escherichia coli| Length = 343 Score = 34.7 bits (78), Expect = 2.0 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Frame = +3 Query: 1665 MTNVVGGIIVFVLWLLI---LGIATTNFLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVM 1835 M+ ++ I+ VL LL G++ + L F L + D L F I+ L+ Sbjct: 118 MSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIM-LYFD 176 Query: 1836 HPFDVGD--RCXXXXXXXXXXXMNILTTVFLRYDNLKIYYPNNVLASIPIKN 1985 PF +GD R + T +DN +Y PN++ +SI ++N Sbjct: 177 RPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVEN 228
>P0AEB6:YNAI_ECO57 MscS family inner membrane protein ynaI - Escherichia coli O157:H7| Length = 343 Score = 34.7 bits (78), Expect = 2.0 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Frame = +3 Query: 1665 MTNVVGGIIVFVLWLLI---LGIATTNFLVFLSSPFLVAIIVFGDTLKAIFEAIVFLFVM 1835 M+ ++ I+ VL LL G++ + L F L + D L F I+ L+ Sbjct: 118 MSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIM-LYFD 176 Query: 1836 HPFDVGD--RCXXXXXXXXXXXMNILTTVFLRYDNLKIYYPNNVLASIPIKN 1985 PF +GD R + T +DN +Y PN++ +SI ++N Sbjct: 177 RPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVEN 228
>Q1RKH8:PRIM_RICBR DNA primase - Rickettsia bellii (strain RML369-C)| Length = 599 Score = 33.5 bits (75), Expect = 4.5 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%) Frame = +3 Query: 1113 TKNLSGQVSFRTSSVSMSKQQGQGSKKLTSKEKRQHQTADEGISI--------------D 1250 T N+SG +S+ S++ ++ G KLT K+K ++ +DE ++I + Sbjct: 72 TSNISG-LSYNDSAIKLATDYGVEIPKLTQKQKEFYEESDEILNILELANKFFKSQLTPE 130 Query: 1251 KLNRLNRRNVSAWNMK 1298 LN LN RN++ +K Sbjct: 131 ILNYLNERNITNETIK 146
>P36261:YO31_STRGR Hypothetical 31.2 kDa protein in rplA-rplJ intergenic region -| Streptomyces griseus Length = 305 Score = 32.7 bits (73), Expect = 7.7 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = +3 Query: 1335 TIDEQIKQATGEGDLSATHIRSEYESHMAAKKIFHNVAKHRSKYIY--LADL 1484 T+ + +KQA G+G + A + + EY ++M + KH +Y Y LA+L Sbjct: 105 TMGDALKQAGGDGSVQARYFKDEYYANMGDAMAANTGGKHWIRYSYKDLAEL 156
>Q9ULV0:MYO5B_HUMAN Myosin-Vb - Homo sapiens (Human)| Length = 1849 Score = 32.7 bits (73), Expect = 7.7 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = +3 Query: 87 RLIGNFLRKQRAPGAEPSLDLDLEMEEHGRPPQRARSPRVSLEDEHQK 230 RL + Q++PG + SL L E+E QRA S R LED H + Sbjct: 961 RLKKELVHYQQSPGEDTSLRLQEEVESLRTELQRAHSERKILEDAHSR 1008 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 402,162,186 Number of extensions: 8510104 Number of successful extensions: 26267 Number of sequences better than 10.0: 12 Number of HSP's gapped: 26254 Number of HSP's successfully gapped: 12 Length of query: 859 Length of database: 100,686,439 Length adjustment: 122 Effective length of query: 737 Effective length of database: 67,222,449 Effective search space: 49542944913 Effective search space used: 49542944913 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
