ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf58h16 |
|---|---|
| Clone Library Name | barley_pub |
>Q6GPB5:ALKB5_XENLA Alkylated repair protein alkB homolog 5 - Xenopus laevis (African| clawed frog) Length = 360 Score = 74.7 bits (182), Expect = 1e-12 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Frame = +1 Query: 196 FGCCYNYATDRKGNPPGIIRTFVSDPIPEL----FKVMIKRLVRWRILPTDCVPDSCIVN 363 FG Y Y + PG R + + E+ +++I+RLV RI+P V +S ++N Sbjct: 103 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPGWVHELVIRRLVERRIIPEGFV-NSAVIN 161 Query: 364 MYDPGDCIPPHIDS-HDFVRPFCTVSFLSECNILFGSSLKIAGPGEFTGSFAIPLPVGSV 540 Y PG CI H+D H F RP +VSF S+ + FG + F +P+ GSV Sbjct: 162 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVRRGSV 221 Query: 541 LVINGNGADVAKHCV 585 V++G AD HC+ Sbjct: 222 TVLSGYAADEITHCI 236
>Q66JG8:ALKB5_XENTR Alkylated repair protein alkB homolog 5 - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 358 Score = 74.3 bits (181), Expect = 1e-12 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Frame = +1 Query: 196 FGCCYNYATDRKGNPPGIIRTFVSDPIPEL----FKVMIKRLVRWRILPTDCVPDSCIVN 363 FG Y Y + PG R + + E+ +++I+RLV R++P V +S ++N Sbjct: 101 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVIN 159 Query: 364 MYDPGDCIPPHIDS-HDFVRPFCTVSFLSECNILFGSSLKIAGPGEFTGSFAIPLPVGSV 540 Y PG CI H+D H F RP +VSF S+ + FG + F +P+ GSV Sbjct: 160 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQRGSV 219 Query: 541 LVINGNGADVAKHCV 585 V++G AD HC+ Sbjct: 220 TVLSGYAADEITHCI 234
>Q6P6C2:ALKB5_HUMAN Alkylated repair protein alkB homolog 5 - Homo sapiens (Human)| Length = 458 Score = 73.2 bits (178), Expect = 3e-12 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Frame = +1 Query: 196 FGCCYNYATDRKGNPPGIIRTFVS---DPIPE-LFKVMIKRLVRWRILPTDCVPDSCIVN 363 FG Y Y + PG R + D IPE + +++I++LV R++P V +S ++N Sbjct: 135 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVIN 193 Query: 364 MYDPGDCIPPHIDS-HDFVRPFCTVSFLSECNILFGSSLKIAGPGEFTGSFAIPLPVGSV 540 Y PG CI H+D H F RP +VSF S+ + FG + ++P+ GSV Sbjct: 194 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSV 253 Query: 541 LVINGNGADVAKHCV 585 V++G AD HC+ Sbjct: 254 TVLSGYAADEITHCI 268
>Q3TSG4:ALKB5_MOUSE Alkylated repair protein alkB homolog 5 - Mus musculus (Mouse)| Length = 395 Score = 72.0 bits (175), Expect = 7e-12 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Frame = +1 Query: 196 FGCCYNYATDRKGNPPGIIRTFVS---DPIPE-LFKVMIKRLVRWRILPTDCVPDSCIVN 363 FG Y Y + PG R + D IP+ + +++I++LV R++P V +S ++N Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFV-NSAVIN 194 Query: 364 MYDPGDCIPPHIDS-HDFVRPFCTVSFLSECNILFGSSLKIAGPGEFTGSFAIPLPVGSV 540 Y PG CI H+D H F RP +VSF S+ + FG + ++P+ GSV Sbjct: 195 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSV 254 Query: 541 LVINGNGADVAKHCV 585 V++G AD HC+ Sbjct: 255 TVLSGYAADEITHCI 269
>Q5UR03:YL905_MIMIV Uncharacterized protein L905 - Mimivirus| Length = 210 Score = 43.9 bits (102), Expect = 0.002 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Frame = +1 Query: 271 PIPELFKVMIKRLVRWRILPT--DCVPDSCIVNMYDPGDCIPPHIDSHDFVRPFCTVSFL 444 PIP + +L+ IL D PD IVN Y PG+ + PH D D+ + Sbjct: 65 PIPNKIPKYLDQLINQMILDKIIDQKPDQIIVNEYKPGEGLKPHFDRKDYYQ-------- 116 Query: 445 SECNILFGSSLKIAGPGEFTGSFAIP------LPVGSVLVINGNGADVAKHCVP 588 N++ G SL EF + IP +P S+ +I + + KH +P Sbjct: 117 ---NVIIGLSLGSGTIMEFYKNKPIPEKKKIYIPPRSLYIIKDDARYIWKHGIP 167
>O60066:ALKBH_SCHPO Alkylated DNA repair protein alkB homolog - Schizosaccharomyces| pombe (Fission yeast) Length = 273 Score = 40.0 bits (92), Expect = 0.028 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +1 Query: 346 DSCIVNMYDPGDCIPPHID--SHDFVRPFCTVSFLSECNILFGSSLKIAGPGEFTGSFAI 519 ++ IVN Y PGD + HID D P ++S +C L G+ + P A+ Sbjct: 184 EAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCIYLIGTESRSEKPS------AL 237 Query: 520 PLPVGSVLVINGNG--ADVAKHC 582 L G V+++ G A KHC Sbjct: 238 RLHSGDVVIMTGTSRKAFHGKHC 260
>Q03155:AIDA_ECOLI Adhesin AIDA-I precursor - Escherichia coli| Length = 1286 Score = 34.7 bits (78), Expect = 1.2 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%) Frame = -1 Query: 530 TGRGIANEPVNSPGPAIFRLDPKSMLHSLRNETVQN----GRTKSWLSICGGMQ---SPG 372 +GRG +N VNS G I K+ ++ + QN G T S + GG+Q S G Sbjct: 72 SGRGNSNATVNSGGTQIVNNGGKTTATTVNSSGSQNVGTSGATISTIVNSGGIQRVSSGG 131 Query: 371 SYMLTMQLSGTQSVGRIRHLTNLLI-----MTLNSSGIGSETKV 255 T G Q++ + H +N +I T+ S GI T + Sbjct: 132 VASATNLSGGAQNIYNLGHASNTVIFSGGNQTIFSGGITDSTNI 175
>Q8L9K1:ERF99_ARATH Ethylene-responsive transcription factor 13 - Arabidopsis thaliana| (Mouse-ear cress) Length = 226 Score = 33.5 bits (75), Expect = 2.6 Identities = 22/71 (30%), Positives = 31/71 (43%) Frame = +3 Query: 1095 VNNGADSQARGQRMEHRQLQMINRTINDDMDSLSFGSHEPSDQPRVSVRTIHNRPRTRIN 1274 VNNG +S RM R N +ND+ L + D I+N R ++ Sbjct: 7 VNNGVNS-----RMYFRNPSFSNVILNDNWSDLPLSVDDSQDM------AIYNTLRDAVS 55 Query: 1275 LGW*PAIPRVT 1307 GW P++P VT Sbjct: 56 SGWTPSVPPVT 66 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 299,548,178 Number of extensions: 7074731 Number of successful extensions: 20574 Number of sequences better than 10.0: 8 Number of HSP's gapped: 20542 Number of HSP's successfully gapped: 8 Length of query: 539 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 421 Effective length of database: 68,319,629 Effective search space: 28762563809 Effective search space used: 28762563809 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
