>P26366:AMIB_SALTY N-acetylmuramoyl-L-alanine amidase amiB precursor - Salmonella|
           typhimurium
          Length = 439
 Score = 32.7 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 48  LSIHLAPPQTPIIHGRTAGPPRPSSPHMTQRRPSDDEL----QPGGYTRPATAAAS 203
           ++  + PP  P++  R    PRP+ P     + SDD L         TRPA  A++
Sbjct: 125 INADVPPPPPPVVAKRVESAPRPTEPARNPFKSSDDRLTGVTSSNTVTRPAARASA 180

>Q6NZN0:RBM26_MOUSE RNA-binding protein 26 - Mus musculus (Mouse)|
          Length = 1012

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
 Frame = +3

Query: 54  IHLAPPQTPIIHGRTAGPPRPSSPHMTQRRPSDDELQPGGYTRPATAAASA--------- 206
           ++L PP  P       GP  PS P +T   P    LQP G   P  +A S+         
Sbjct: 358 VNLRPPVPP------PGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGI 411

Query: 207 HHQP 218
           HHQP
Sbjct: 412 HHQP 415

>Q5T8P6:RBM26_HUMAN RNA-binding protein 26 - Homo sapiens (Human)|
          Length = 1007

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
 Frame = +3

Query: 54  IHLAPPQTPIIHGRTAGPPRPSSPHMTQRRPSDDELQPGGYTRPATAAASA--------- 206
           ++L PP  P       GP  PS P +T   P    LQP G   P  +A S+         
Sbjct: 358 VNLRPPVPP------PGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGI 411

Query: 207 HHQP 218
           HHQP
Sbjct: 412 HHQP 415

>Q08624:HXC4_MOUSE Homeobox protein Hox-C4 - Mus musculus (Mouse)|
          Length = 264

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
 Frame = +3

Query: 24  WPPCST*RLSIHLAPPQTPIIHGRTAG-----------PPRPSSPHMTQRRPSDDELQPG 170
           +PPC     + ++ P  +P  +GRT             PP P  P   +R+ S   LQ  
Sbjct: 17  FPPCEEYSQNSYI-PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP 75

Query: 171 GYTRPATAAASAHHQP 218
           G +R    A + HH P
Sbjct: 76  GNSRAHGPAQAGHHHP 91

>Q8F7Q5:NUOH_LEPIN NADH-quinone oxidoreductase subunit H - Leptospira interrogans|
          Length = 346

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
 Frame = +2

Query: 398 VFDRILRRILFTVGVPMASGVALLNVYDALKRGGGAEVPSWVQLLT-------------- 535
           VF   + ++++ +  P  S    +  +  +  GG   +PSW+Q  T              
Sbjct: 68  VFPVQVNKVMYLIA-PAISMTCAIMAWSVVPLGGQIPLPSWLQEKTGLTFLDLQIANPDT 126

Query: 536 -ILLSFGTSALGIAYGTLSASWDPEKEGSLLG 628
            IL  F  S+L + YG + A W    + SLLG
Sbjct: 127 GILFLFAISSLAV-YGIIIAGWASNNKYSLLG 157

>Q72NT2:NUOH_LEPIC NADH-quinone oxidoreductase subunit H - Leptospira interrogans|
           serogroup Icterohaemorrhagiae serovar copenhageni
          Length = 346

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
 Frame = +2

Query: 398 VFDRILRRILFTVGVPMASGVALLNVYDALKRGGGAEVPSWVQLLT-------------- 535
           VF   + ++++ +  P  S    +  +  +  GG   +PSW+Q  T              
Sbjct: 68  VFPVQVNKVMYLIA-PAISMTCAIMAWSVVPLGGQIPLPSWLQEKTGLTFLDLQIANPDT 126

Query: 536 -ILLSFGTSALGIAYGTLSASWDPEKEGSLLG 628
            IL  F  S+L + YG + A W    + SLLG
Sbjct: 127 GILFLFAISSLAV-YGIIIAGWASNNKYSLLG 157

>P09017:HXC4_HUMAN Homeobox protein Hox-C4 - Homo sapiens (Human)|
          Length = 264

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
 Frame = +3

Query: 24  WPPCST*RLSIHLAPPQTPIIHGRTAG-----------PPRPSSPHMTQRRPSDDELQPG 170
           +PPC     + ++ P  +P  +GRT             PP P  P   +R+ S   LQ  
Sbjct: 17  FPPCEEYSQNSYI-PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP 75

Query: 171 GYTRPATAAASAHHQP 218
           G +R    A + HH P
Sbjct: 76  GNSRGHGPAQAGHHHP 91

>Q96M96:FGD4_HUMAN FYVE, RhoGEF and PH domain-containing protein 4 - Homo sapiens|
           (Human)
          Length = 766

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 51  SIHLAPPQTPIIHGRTAGPPRP-SSPHMTQRRPSDDELQPGGYTRPATAAASAHHQ 215
           +++L  P+TP  HG T  P +   S H+ QR+ +D +   G  T  A    +A +Q
Sbjct: 44  AVNLNAPRTPGRHGLTTTPQQKLLSQHLPQRQGNDTDKTQGAQTCVANGVMAAQNQ 99

>P0C197:CLCNX_USTMA Probable chloride channel protein UM03490-D - Ustilago maydis (Smut|
           fungus)
          Length = 1131

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 160 SSSSLGRRCVMWGEDG--RGGPAVRPWMMGVWGGARWM 53
           S++ LG     WG  G  RGG   R W  G WG   W+
Sbjct: 84  SNAHLGNADAAWGHIGFGRGGVPPRWWSRGPWGRRAWL 121

>Q9D2P8:MOBP_MOUSE Myelin-associated oligodendrocyte basic protein - Mus musculus|
           (Mouse)
          Length = 170

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 63  APPQTPIIHGRTAGPPRPSSPHMTQRRPSDDELQPGGYTRPATAAASAHHQP 218
           A P++P++  +   PPRP+ P    R PS  E QP    RP      A  +P
Sbjct: 94  AKPKSPLMPAKPRSPPRPAKP----RSPSRTERQP--RPRPEVRPPPAKQKP 139


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 113,628,733
Number of extensions: 2292944
Number of successful extensions: 8121
Number of sequences better than 10.0: 10
Number of HSP's gapped: 8107
Number of HSP's successfully gapped: 10
Length of query: 303
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 190
Effective length of database: 69,691,104
Effective search space: 13241309760
Effective search space used: 13241309760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)