ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf49p24 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os05g36070:12005.t03200:unspliced-genomic minor histocompatibility antigen H13, putative, expressed| Length = 6450 Score = 65.7 bits (137), Expect(2) = 7e-11 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = +2 / +2 Query: 23 QPALLYIVPGVTGFVAVHSLWNGEVKPLLEFTET 124 QPALLYIVPGV GFVAVH LWNGEVKP+ T T Sbjct: 4943 QPALLYIVPGVIGFVAVHCLWNGEVKPVSLLTLT 5044 Score = 24.0 bits (46), Expect(2) = 7e-11 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +2 / +2 Query: 2 MNWFQAAQ 25 MNWFQAAQ Sbjct: 4538 MNWFQAAQ 4561 Score = 66.1 bits (138), Expect = 1e-10 Identities = 24/26 (92%), Positives = 26/26 (100%) Frame = -1 / -1 Query: 99 FTSPFHKE*TATKPVTPGTMYNRAGC 22 FTSPFHK+*TATKP+TPGTMYNRAGC Sbjct: 5019 FTSPFHKQ*TATKPITPGTMYNRAGC 4942 Score = 57.9 bits (120), Expect = 4e-08 Identities = 24/39 (61%), Positives = 27/39 (69%) Frame = +1 / +1 Query: 7 LVSSCTACSVIHRSRRDWFCGCSLFVEW*SKTAIGVHRD 123 + SS ACSV+H S DWFC CSLFVEW*SK V+ D Sbjct: 4927 IFSSYAACSVVHCSWCDWFCCCSLFVEW*SKAGKFVNSD 5043 Score = 50.6 bits (104), Expect(2) = 5e-06 Identities = 20/30 (66%), Positives = 23/30 (76%) Frame = -2 / -2 Query: 113 TPIAVLLHHSTKSEQPQNQSRRERCITEQA 24 T + LLHHST SEQ QNQS +E+C TEQA Sbjct: 5033 TNLPALLHHSTNSEQQQNQSHQEQCTTEQA 4944 Score = 22.6 bits (43), Expect(2) = 5e-06 Identities = 7/11 (63%), Positives = 10/11 (90%) Frame = -3 / -3 Query: 34 QSRLCSLKPVH 2 ++ LCSL+PVH Sbjct: 4570 RTHLCSLEPVH 4538 Score = 46.4 bits (95), Expect = 1e-04 Identities = 19/27 (70%), Positives = 22/27 (81%) Frame = -3 / -3 Query: 103 RFYFTIPQRVNSHKTSHAGNDV*QSRL 23 R YFTIPQ VNS+KT+H N+V QSRL Sbjct: 5023 RLYFTIPQTVNSNKTNHTRNNVQQSRL 4943 Score = 43.2 bits (88), Expect = 0.001 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = +3 / +3 Query: 24 SLLCYTSFPA*LVLWLFTLCGMVK*NR 104 SLLC T F *LVL LFT+CGMVK*+R Sbjct: 4944 SLLCCTLFLV*LVLLLFTVCGMVK*SR 5024
>LOC_Os02g02530:12002.t00152:unspliced-genomic minor histocompatibility antigen H13, putative, expressed| Length = 5101 Score = 64.8 bits (135), Expect(2) = 1e-10 Identities = 25/28 (89%), Positives = 26/28 (92%) Frame = +2 / +3 Query: 23 QPALLYIVPGVTGFVAVHSLWNGEVKPL 106 QPALLYIVPGV GFVAVH LWNGEVKP+ Sbjct: 3747 QPALLYIVPGVIGFVAVHCLWNGEVKPV 3830 Score = 24.0 bits (46), Expect(2) = 1e-10 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +2 / +3 Query: 2 MNWFQAAQ 25 MNWFQAAQ Sbjct: 3279 MNWFQAAQ 3302 Score = 60.6 bits (126), Expect = 5e-09 Identities = 22/25 (88%), Positives = 24/25 (96%) Frame = -1 / -1 Query: 96 TSPFHKE*TATKPVTPGTMYNRAGC 22 TSPFHK+*TATKP+TPGTMY RAGC Sbjct: 3820 TSPFHKQ*TATKPITPGTMYKRAGC 3746 Score = 44.6 bits (91), Expect = 4e-04 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = +1 / +2 Query: 25 ACSVIHRSRRDWFCGCSLFVEW*SKTAIGV 114 AC ++H S DWFC CSLF+EW S+ + V Sbjct: 3749 ACPLVHCSWCDWFCCCSLFMEWRSQASKSV 3838 Score = 35.0 bits (70), Expect = 0.29 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -2 / -2 Query: 113 TPIAVLLHHSTKSEQPQNQSRRERCITEQAVQLETS 6 T + L HS SEQ QNQS +E+C QA + +++ Sbjct: 3837 TDLLA*LLHSINSEQQQNQSHQEQCTRGQAAKTKSA 3730 Score = 31.8 bits (63), Expect(2) = 1.2 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 / -3 Query: 94 FTIPQRVNSHKTSHAGNDV*QSRL 23 F+IP VNS+KT+H N+V + RL Sbjct: 3818 FSIP*TVNSNKTNHTRNNVQEGRL 3747 Score = 22.1 bits (42), Expect(2) = 1.2 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = -3 / -3 Query: 31 SRLCSLKPVH 2 + LC LKPVH Sbjct: 3308 THLCGLKPVH 3279
>LOC_Os04g19280:12004.t01668:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1701 Score = 33.6 bits (67), Expect = 0.74 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -3 / -3 Query: 409 FFLVQVF*HIMFPFRPSSTTHQN 341 F+L+Q+F H++ PF PS QN Sbjct: 1576 FWLLQIFVHVVLPFEPSGPNSQN 1508
>LOC_Os12g33360:12012.t03027:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5374 Score = 33.1 bits (66), Expect = 1.0 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 / +2 Query: 7 LVSSCTACSVIHRSRRDWFCGCSLFVEW*SKTAIGVHR 120 LVSS + I RSR WF C+ V W K + + R Sbjct: 1091 LVSSLCSTLQIRRSRNTWFIICNRMVRWWLKLFLSIWR 1204
>LOC_Os01g44990:12001.t03958:unspliced-genomic SNF2 family N-terminal domain containing protein, expressed| Length = 7296 Score = 33.1 bits (66), Expect = 1.0 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -1 / +1 Query: 366 VRLLQLTKTNS**PFETKSSIIFRFSGSYSLFEILLWF 253 + + LT NS T S ++ RFS +Y LF IL+WF Sbjct: 694 ITIFSLTNLNSIVIIFTVSYLVNRFSMAY*LFVILIWF 807
>LOC_Os09g35790:12009.t03057:unspliced-genomic heat shock factor protein 7, putative, expressed| Length = 3914 Score = 32.7 bits (65), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 / -2 Query: 113 TPIAVLLHHSTKSEQPQNQSRRERCITE 30 TP AV+ HH K P S R +CIT+ Sbjct: 3643 TPFAVVCHHHPKPLTPLPHSERPQCITK 3560
>LOC_Os12g09410:12012.t00820:unspliced-genomic retrotransposon protein, putative, LINE subclass| Length = 1497 Score = 30.9 bits (61), Expect = 5.0 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -2 / -2 Query: 362 VFYNSPKQIVNDLSKQRVLSFFDSQDHTVYLKSC 261 +F N PK + K ++ F + QDH V + +C Sbjct: 932 IFKNQPKSQFWHIQKSKLFQFVEKQDHLVAVFNC 831
>LOC_Os11g06400:12011.t00532:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7923 Score = 29.9 bits (59), Expect = 9.4 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +3 / +1 Query: 9 GFKLHSLLCYTSFPA*LVLWLFTLC 83 G +L LLCY P ++LW + +C Sbjct: 904 GLRLGLLLCYIDMPIWILLWSWLVC 978
>LOC_Os05g38550:12005.t03397:unspliced-genomic ubiquitin-conjugating enzyme E2 7, putative, expressed| Length = 4469 Score = 29.9 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +1 / +1 Query: 13 SSCTACSVIHRSRRDWFCGCSLFVEW 90 SS C R +WF GC+ FV W Sbjct: 871 SSF*VCGYCWIDRNNWFSGCTRFVGW 948
>LOC_Os04g48850:12004.t04401:unspliced-genomic 1-aminocyclopropane-1-carboxylate synthase, putative, expressed| Length = 2873 Score = 29.9 bits (59), Expect = 9.5 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1 / +3 Query: 16 SCTACSVIHRSRRDWFCG 69 +C ACS R RR W CG Sbjct: 2001 TCAACSGRRRPRRSWSCG 2054 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 135,118,709 Number of extensions: 1636388 Number of successful extensions: 4746 Number of sequences better than 10.0: 10 Length of query: 139 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 92 Effective length of database: 52,968,820 Effective search space: 4873131440 Effective search space used: 4873131440 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
