ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf52g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ245112.1| Zea mays clone 13105 mRNA sequence 184 2e-43
2gb|AY104009.1| Zea mays PCO089454 mRNA sequence 168 1e-38
3ref|NM_001057707.1| Oryza sativa (japonica cultivar-group) Os03g... 135 2e-28
4dbj|AK120740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
5gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 geno... 113 6e-22
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
7dbj|AK241866.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 66 1e-07
8ref|NM_001062589.1| Oryza sativa (japonica cultivar-group) Os05g... 66 1e-07
9gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13ref|XM_001225793.1| Chaetomium globosum CBS 148.51 hypothetical ... 48 0.031
14emb|CR933559.5| Zebrafish DNA sequence from clone DKEY-51M8 in l... 44 0.49
15emb|CR450766.5| Zebrafish DNA sequence from clone DKEY-192C10 in... 44 0.49
16gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complet... 44 0.49
17emb|AJ335646.1|HSA335646 Homo sapiens genomic sequence surroundi... 44 0.49
18gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete s... 42 1.9
19gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 42 1.9
20gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduc... 42 1.9
21gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 42 1.9
22emb|AL162730.26| Human DNA sequence from clone RP11-265B8 on chr... 42 1.9
23emb|CR954196.1| Medicago truncatula chromosome 5 clone mth2-157e... 42 1.9
24gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 42 1.9
25gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, compl... 42 1.9
26gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CI... 42 1.9
27gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, r... 42 1.9
28ref|XM_665846.1| Plasmodium berghei strain ANKA hypothetical pro... 42 1.9
29gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966,... 40 7.6
30gb|CP000454.1| Arthrobacter sp. FB24, complete genome 40 7.6
31gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s... 40 7.6
32gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome 40 7.6
33gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 7.6
34gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 7.6
35gb|AC008221.5| Drosophila melanogaster clone BACR30B13, complete... 40 7.6
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.6
37ref|XM_740919.1| Plasmodium chabaudi chabaudi DNA repair protein... 40 7.6
38dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.6
39gb|AC078858.8| Homo sapiens 3 BAC RP11-582I8 (Roswell Park Cance... 40 7.6
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
41gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, c... 40 7.6
42emb|AL442644.7| Human DNA sequence from clone RP11-342F21 on chr... 40 7.6
43emb|AL360230.20| Human DNA sequence from clone RP11-379I13 on ch... 40 7.6
44emb|AL158164.15| Human DNA sequence from clone RP11-414K1 on chr... 40 7.6
45emb|AL137003.12| Human DNA sequence from clone RP1-151F17 on chr... 40 7.6
46emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L... 40 7.6
47emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15... 40 7.6
48emb|CR450814.4| Zebrafish DNA sequence from clone CH211-157B11 i... 40 7.6
49gb|AY057451.1| Fundulus heteroclitus Sp3 transcription factor mR... 40 7.6
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.6
51emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
52emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.6
53emb|CR936501.3| Mouse DNA sequence from clone RP24-121C24 on chr... 40 7.6
54gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance... 40 7.6
55dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.6
56emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chro... 40 7.6
57gb|AC090286.16| Homo sapiens chromosome 17, clone RP11-28B23, co... 40 7.6
58gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 7.6
59gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 40 7.6
60gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete s... 40 7.6
61gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome... 40 7.6
62gb|AC105030.11| Homo sapiens chromosome 17, clone CTD-2244F11, c... 40 7.6

>gb|DQ245112.1| Zea mays clone 13105 mRNA sequence
          Length = 638
 Score =  184 bits (93), Expect = 2e-43
 Identities = 153/173 (88%)
 Strand = Plus / Plus

                                                                       
Query: 52  gatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctctt 111
           ||||||||| || |||||||||||||||| ||| ||||| |||| || | ||||||||||
Sbjct: 115 gatggcgctgactaacttcatcgtgacggtggccgtggttggcgcgggggtgcttctctt 174

                                                                       
Query: 112 cactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccgaca 171
           ||| |||||| |||| | ||| |||||| |||||||||||||||| |||||  |||| ||
Sbjct: 175 caccaccgacatccgcaggtctggcgccctcttccgccgcaacgcgcgccagctccggca 234

                                                                
Query: 172 gtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcag 224
           |||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 235 gtggctcgaggaggacacggcctccgccgcgtccaagtctgcaaaagaagcag 287



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>gb|AY104009.1| Zea mays PCO089454 mRNA sequence
          Length = 559

 Score =  168 bits (85), Expect = 1e-38
 Identities = 151/173 (87%)
 Strand = Plus / Plus

                                                                       
Query: 52  gatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctctt 111
           ||||||||| || |||||||||||||||| ||| ||||| |||| || | ||||||||||
Sbjct: 80  gatggcgctgactaacttcatcgtgacggtggccgtggttggcgcgggggtgcttctctt 139

                                                                       
Query: 112 cactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccgaca 171
            || |||||| |||| | ||| |||||| |||||||||||||||| |||||  |||| | 
Sbjct: 140 taccaccgacatccgcaggtctggcgccctcttccgccgcaacgcgcgccagctccggct 199

                                                                
Query: 172 gtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcag 224
           |||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 200 gtggctcgaggaggacacggcctccgccgcgtccaagtctgcaaaagaagcag 252



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>ref|NM_001057707.1| Oryza sativa (japonica cultivar-group) Os03g0733000 (Os03g0733000)
           mRNA, complete cds
          Length = 494

 Score =  135 bits (68), Expect = 2e-28
 Identities = 187/227 (82%), Gaps = 6/227 (2%)
 Strand = Plus / Plus

                                                                       
Query: 50  gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109
           ||||||||||| ||||||||| |  |||||| ||||| |||||||| ||||  ||| |||
Sbjct: 53  gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 112

                                                                       
Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169
           ||||| |||||| |||| |||||||||||  | |||||||||||||||||||| || || 
Sbjct: 113 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 172

                                                                       
Query: 170 cagtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcagttccg 229
              ||||||||||||||  ||||||||||||| |||| ||| |||||||| |||      
Sbjct: 173 gcctggctcgaggaggaatccgcctccgccgcgtccaggtcagcaaaagacgca------ 226

                                                          
Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276
           ||||||||||| ||| |||| || ||||| ||||| |||||||||||
Sbjct: 227 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 273



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>dbj|AK120740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003O17, full
           insert sequence
          Length = 495

 Score =  135 bits (68), Expect = 2e-28
 Identities = 187/227 (82%), Gaps = 6/227 (2%)
 Strand = Plus / Plus

                                                                       
Query: 50  gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109
           ||||||||||| ||||||||| |  |||||| ||||| |||||||| ||||  ||| |||
Sbjct: 54  gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 113

                                                                       
Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169
           ||||| |||||| |||| |||||||||||  | |||||||||||||||||||| || || 
Sbjct: 114 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 173

                                                                       
Query: 170 cagtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcagttccg 229
              ||||||||||||||  ||||||||||||| |||| ||| |||||||| |||      
Sbjct: 174 gcctggctcgaggaggaatccgcctccgccgcgtccaggtcagcaaaagacgca------ 227

                                                          
Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276
           ||||||||||| ||| |||| || ||||| ||||| |||||||||||
Sbjct: 228 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 274



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>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
             sequence
          Length = 163712

 Score =  113 bits (57), Expect = 6e-22
 Identities = 132/157 (84%)
 Strand = Plus / Plus

                                                                         
Query: 50    gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109
             ||||||||||| ||||||||| |  |||||| ||||| |||||||| ||||  ||| |||
Sbjct: 38981 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 39040

                                                                         
Query: 110   ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169
             ||||| |||||| |||| |||||||||||  | |||||||||||||||||||| || || 
Sbjct: 39041 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 39100

                                                  
Query: 170   cagtggctcgaggaggacaccgcctccgccgcatcca 206
                ||||||||||||||  ||||||||||||| ||||
Sbjct: 39101 gcctggctcgaggaggaatccgcctccgccgcgtcca 39137



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 230   cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276
             ||||||||||| ||| |||| || ||||| ||||| |||||||||||
Sbjct: 40301 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 40347



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  113 bits (57), Expect = 6e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                            
Query: 50       gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109
                ||||||||||| ||||||||| |  |||||| ||||| |||||||| ||||  ||| |||
Sbjct: 29823818 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 29823759

                                                                            
Query: 110      ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169
                ||||| |||||| |||| |||||||||||  | |||||||||||||||||||| || || 
Sbjct: 29823758 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 29823699

                                                     
Query: 170      cagtggctcgaggaggacaccgcctccgccgcatcca 206
                   ||||||||||||||  ||||||||||||| ||||
Sbjct: 29823698 gcctggctcgaggaggaatccgcctccgccgcgtcca 29823662



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 230      cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276
                ||||||||||| ||| |||| || ||||| ||||| |||||||||||
Sbjct: 29822498 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 29822452



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>dbj|AK241866.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065217I20,
           full insert sequence
          Length = 3188

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200
           ||||||||||||||| |||||| |||||  ||||||||||||||||  ||||| ||||||
Sbjct: 169 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 228

            
Query: 201 c 201
           |
Sbjct: 229 c 229



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 52  gatggcgctcaccaacttcatcgtgacgg 80
           ||||||||| |||||||||||| ||||||
Sbjct: 80  gatggcgctgaccaacttcatcctgacgg 108



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>ref|NM_001062589.1| Oryza sativa (japonica cultivar-group) Os05g0517800 (Os05g0517800)
           mRNA, complete cds
          Length = 234

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200
           ||||||||||||||| |||||| |||||  ||||||||||||||||  ||||| ||||||
Sbjct: 89  tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 148

            
Query: 201 c 201
           |
Sbjct: 149 c 149



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 53 atggcgctcaccaacttcatcgtgacgg 80
          |||||||| |||||||||||| ||||||
Sbjct: 1  atggcgctgaccaacttcatcctgacgg 28



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>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
              complete sequence
          Length = 143073

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 141    tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200
              ||||||||||||||| |||||| |||||  ||||||||||||||||  ||||| ||||||
Sbjct: 103251 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 103310

               
Query: 201    c 201
              |
Sbjct: 103311 c 103311



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 52     gatggcgctcaccaacttcatcgtgacgg 80
              ||||||||| |||||||||||| ||||||
Sbjct: 103162 gatggcgctgaccaacttcatcctgacgg 103190



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 141      tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200
                ||||||||||||||| |||||| |||||  ||||||||||||||||  ||||| ||||||
Sbjct: 25462890 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 25462949

                 
Query: 201      c 201
                |
Sbjct: 25462950 c 25462950



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 52       gatggcgctcaccaacttcatcgtgacgg 80
                ||||||||| |||||||||||| ||||||
Sbjct: 25462801 gatggcgctgaccaacttcatcctgacgg 25462829



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 107      ctcttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgc 160
                |||||| | |||||| |||| |||||||||||  | ||||||||||||||||||
Sbjct: 26558672 ctcttcgccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgc 26558725



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>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0049H05
          Length = 161934

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 107   ctcttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgc 160
             |||||| | |||||| |||| |||||||||||  | ||||||||||||||||||
Sbjct: 32386 ctcttcgccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgc 32439



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>ref|XM_001225793.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_08138)
           mRNA, complete cds
          Length = 1194

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 78  cggcggcggtggtgggcggggcgc 101
           ||||||||||||||||||||||||
Sbjct: 313 cggcggcggtggtgggcggggcgc 290



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>emb|CR933559.5| Zebrafish DNA sequence from clone DKEY-51M8 in linkage group 11,
             complete sequence
          Length = 119833

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 377   attgcatgactaatatgtttccattttgat 406
             |||||||||||||||||||  |||||||||
Sbjct: 54842 attgcatgactaatatgttgacattttgat 54871



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>emb|CR450766.5| Zebrafish DNA sequence from clone DKEY-192C10 in linkage group 8,
             complete sequence
          Length = 127307

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 271   aaaggatcattgaaatagacca 292
             ||||||||||||||||||||||
Sbjct: 57311 aaaggatcattgaaatagacca 57290



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>gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complete sequence
          Length = 133221

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 69    tcatcgtgacggcggcggtggtgggc 94
             |||||| |||||||||||||||||||
Sbjct: 34338 tcatcgagacggcggcggtggtgggc 34313



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>emb|AJ335646.1|HSA335646 Homo sapiens genomic sequence surrounding NotI site, clone
          NR5-IL13R
          Length = 758

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 69 tcatcgtgacggcggcggtggtgggc 94
          |||||| |||||||||||||||||||
Sbjct: 48 tcatcgagacggcggcggtggtgggc 23



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>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence
          Length = 23011544

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 393     gtttccattttgatataagcatttt 417
               |||||||||||||| ||||||||||
Sbjct: 9525334 gtttccattttgatttaagcatttt 9525358



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>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
          Length = 9139763

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 48      cggagatggcgctcaccaact 68
               |||||||||||||||||||||
Sbjct: 3106733 cggagatggcgctcaccaact 3106713



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>gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduction system, partial
             sequence
          Length = 17155

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    cgtgacggcggcggtggtggg 93
             |||||||||||||||||||||
Sbjct: 14870 cgtgacggcggcggtggtggg 14890



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>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 393   gtttccattttgatataagcatttt 417
             |||||||||||||| ||||||||||
Sbjct: 28890 gtttccattttgatttaagcatttt 28866



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>emb|AL162730.26| Human DNA sequence from clone RP11-265B8 on chromosome 9 Contains the
             3' end of the PIP5K1B gene for
             phosphatidylinositol-4-phosphate 5-kinase, type I, beta
             (MSS4, STM7), the PRKACG gene for protein kinase,
             cAMP-dependent, catalytic, gamma (KAPG), the FRDA gene for
             Friedreich ataxia (FA, FARR), a novel gene and three CpG
             islands, complete sequence
          Length = 171381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   ctgagtgatagagatttgtag 366
             |||||||||||||||||||||
Sbjct: 65768 ctgagtgatagagatttgtag 65748



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>emb|CR954196.1| Medicago truncatula chromosome 5 clone mth2-157e5, COMPLETE SEQUENCE
          Length = 132419

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 386    ctaatatgtttccattttgatataa 410
              |||||||||||||||||| ||||||
Sbjct: 100709 ctaatatgtttccattttaatataa 100733



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>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23,
              complete sequence
          Length = 176610

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 393    gtttccattttgatataagcatttt 417
              |||||||||||||| ||||||||||
Sbjct: 147721 gtttccattttgatttaagcatttt 147745



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>gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, complete sequence
          Length = 160138

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    gcctcccaagaagctggatgg 249
              |||||||||||||||||||||
Sbjct: 131167 gcctcccaagaagctggatgg 131187



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>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CIT987SK-334D11, complete sequence
          Length = 173882

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   gcctcccaagaagctggatgg 249
             |||||||||||||||||||||
Sbjct: 14752 gcctcccaagaagctggatgg 14772



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>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22,
              complete sequence
          Length = 183007

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 393    gtttccattttgatataagcatttt 417
              |||||||||||||| ||||||||||
Sbjct: 178783 gtttccattttgatttaagcatttt 178759



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>ref|XM_665846.1| Plasmodium berghei strain ANKA hypothetical protein (PB301330.00.0)
           partial mRNA
          Length = 807

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 463 tattattttcttcatgacaac 483
           |||||||||||||||||||||
Sbjct: 445 tattattttcttcatgacaac 425



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>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome
          Length = 4744448

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     ggcggtggtgggcggggcgctgct 105
              ||||||||||| ||||||||||||
Sbjct: 612779 ggcggtggtggccggggcgctgct 612802



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>gb|CP000454.1| Arthrobacter sp. FB24, complete genome
          Length = 4698945

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     gtggtgggcggggcgctgct 105
              ||||||||||||||||||||
Sbjct: 426315 gtggtgggcggggcgctgct 426334



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>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence
          Length = 27905053

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 408      taagcattttggcgcttgtg 427
                ||||||||||||||||||||
Sbjct: 27099274 taagcattttggcgcttgtg 27099293



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>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
          Length = 3225748

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gtggtgggcggggcgctgct 105
              ||||||||||||||||||||
Sbjct: 586419 gtggtgggcggggcgctgct 586400



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      gtggtgggcggggcgctgct 105
               ||||||||||||||||||||
Sbjct: 1974977 gtggtgggcggggcgctgct 1974996



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 77      acggcggcggtggtgggcggggcg 100
               ||||||| ||||||||||||||||
Sbjct: 1234071 acggcggtggtggtgggcggggcg 1234094



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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gtctggccgccgccacgaca 22
              ||||||||||||||||||||
Sbjct: 837789 gtctggccgccgccacgaca 837808



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>gb|AC008221.5| Drosophila melanogaster clone BACR30B13, complete sequence
          Length = 184278

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    taagcattttggcgcttgtg 427
              ||||||||||||||||||||
Sbjct: 110948 taagcattttggcgcttgtg 110967



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ccgtcttccgccgcaacgcc 157
              ||||||||||||||||||||
Sbjct: 566940 ccgtcttccgccgcaacgcc 566921



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>ref|XM_740919.1| Plasmodium chabaudi chabaudi DNA repair protein (PC000601.02.0)
            partial mRNA
          Length = 3411

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  taatatgtttccattttgat 406
            ||||||||||||||||||||
Sbjct: 1061 taatatgtttccattttgat 1080



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cgtgacggcggcggtggtgg 92
             ||||||||||||||||||||
Sbjct: 33025 cgtgacggcggcggtggtgg 33044



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>gb|AC078858.8| Homo sapiens 3 BAC RP11-582I8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96298

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ttttcttcatgacaacctat 487
             ||||||||||||||||||||
Sbjct: 64704 ttttcttcatgacaacctat 64723



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      cgtccggaagtccggcgccg 140
                ||||||||||||||||||||
Sbjct: 19303032 cgtccggaagtccggcgccg 19303051



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      cgtccggaagtccggcgccg 140
                ||||||||||||||||||||
Sbjct: 19312483 cgtccggaagtccggcgccg 19312502



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>gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, complete sequence
          Length = 195191

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    tccgcctcccaagaagctgg 245
              ||||||||||||||||||||
Sbjct: 123681 tccgcctcccaagaagctgg 123662



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>emb|AL442644.7| Human DNA sequence from clone RP11-342F21 on chromosome 9 Contains a
            novel pseudogene, and the 5' end of a novel gene,
            complete sequence
          Length = 160264

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  catgactaatatgtttccat 400
            ||||||||||||||||||||
Sbjct: 9529 catgactaatatgtttccat 9510



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>emb|AL360230.20| Human DNA sequence from clone RP11-379I13 on chromosome 10 Contains the
             PTER gene for phosphotriesterase related, the 3' end of
             the gene for a novel protein possible ortholog of mouse
             C1q-like protein (gliacolin) and a CpG island, complete
             sequence
          Length = 162599

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tccgcctcccaagaagctgg 245
             ||||||||||||||||||||
Sbjct: 46608 tccgcctcccaagaagctgg 46627



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>emb|AL158164.15| Human DNA sequence from clone RP11-414K1 on chromosome 10 Contains the 3'
              end of the gene for the likely ortholog of mouse
              sialyltransferase 8-VI (alpha-2 8-sialytransferase)
              (ST8SIA-VI), a novel gene and the 5' end of a novel gene,
              complete sequence
          Length = 151289

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    tccgcctcccaagaagctgg 245
              ||||||||||||||||||||
Sbjct: 111045 tccgcctcccaagaagctgg 111026



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>emb|AL137003.12| Human DNA sequence from clone RP1-151F17 on chromosome 6 Contains the 3'
              end of the SCA1 gene for spinocerebellar ataxia
              1n(olivopontocerebellar ataxia 1, autosomal dominant,
              ataxin 1), complete sequence
          Length = 113802

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    gcctcccaagaagctggatg 248
              ||||||||||||||||||||
Sbjct: 102673 gcctcccaagaagctggatg 102654



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>emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L22 on chromosome 20 Contains the 3'
              end of the GDAP1L1 gene for ganglioside-induced
              differentiation-associated protein 1-like 1, the R3HDML
              gene for R3HDML domain containing-like, the C20orf142 gene,
              three novel genes, the 5' end of one variant of the HNF4A
              gene for hepatocyte nuclear factor 4 and two CpG islands,
              complete sequence
          Length = 131841

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    tccgcctcccaagaagctgg 245
              ||||||||||||||||||||
Sbjct: 102094 tccgcctcccaagaagctgg 102113



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>emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15 on chromosome 6p11.2-12.3
             Contains the 3' end of the COL21A1 gene for collagen, type
             XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1,
             COLA1L, COL20A1, DKFZp564B052), complete sequence
          Length = 118431

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   tccgcctcccaagaagctgg 245
             ||||||||||||||||||||
Sbjct: 15045 tccgcctcccaagaagctgg 15026



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>emb|CR450814.4| Zebrafish DNA sequence from clone CH211-157B11 in linkage group 6,
              complete sequence
          Length = 158142

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    cattttgatataagcatttt 417
              ||||||||||||||||||||
Sbjct: 130151 cattttgatataagcatttt 130170



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>gb|AY057451.1| Fundulus heteroclitus Sp3 transcription factor mRNA, partial cds
          Length = 2071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   tgacggcggcggtggtgggcgggg 98
            |||||||| |||||||||||||||
Sbjct: 1759 tgacggcgtcggtggtgggcgggg 1736



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     gtggtgggcggggcgctgct 105
              ||||||||||||||||||||
Sbjct: 814028 gtggtgggcggggcgctgct 814047



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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   cgtccggaagtccggcgccg 140
             ||||||||||||||||||||
Sbjct: 84864 cgtccggaagtccggcgccg 84883



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   cgtccggaagtccggcgccg 140
             ||||||||||||||||||||
Sbjct: 94315 cgtccggaagtccggcgccg 94334



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>emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BAC clone T12K4
          Length = 108879

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   tgatagagatttgtagctca 370
             ||||||||||||||||||||
Sbjct: 64678 tgatagagatttgtagctca 64659



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>emb|CR936501.3| Mouse DNA sequence from clone RP24-121C24 on chromosome X, complete
            sequence
          Length = 4677

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  tgactaatatgtttccattt 402
            ||||||||||||||||||||
Sbjct: 1128 tgactaatatgtttccattt 1109



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>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116556

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   agttccgcctcccaagaagctgga 246
             |||||||||||||||| |||||||
Sbjct: 73829 agttccgcctcccaagtagctgga 73806



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ccggcgccgtcttccgccgc 151
             ||||||||||||||||||||
Sbjct: 59058 ccggcgccgtcttccgccgc 59077



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>emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chromosome X, complete
             sequence
          Length = 35468

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   tgactaatatgtttccattt 402
             ||||||||||||||||||||
Sbjct: 34596 tgactaatatgtttccattt 34577



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>gb|AC090286.16| Homo sapiens chromosome 17, clone RP11-28B23, complete sequence
          Length = 168956

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    tccgcctcccaagaagctgg 245
              ||||||||||||||||||||
Sbjct: 105285 tccgcctcccaagaagctgg 105266



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      gtgacggcggcggtggtggg 93
               ||||||||||||||||||||
Sbjct: 1783640 gtgacggcggcggtggtggg 1783659



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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 456     aattggctattattttcttcatga 479
               |||||||||||||||| |||||||
Sbjct: 1029679 aattggctattatttttttcatga 1029656



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>gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete sequence
          Length = 115967

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   gcctcccaagaagctggatg 248
             ||||||||||||||||||||
Sbjct: 38539 gcctcccaagaagctggatg 38558



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>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete
              sequence
          Length = 196773

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    tgactaatatgtttccattt 402
              ||||||||||||||||||||
Sbjct: 153258 tgactaatatgtttccattt 153277



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>gb|AC105030.11| Homo sapiens chromosome 17, clone CTD-2244F11, complete sequence
          Length = 107848

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tccgcctcccaagaagctgg 245
             ||||||||||||||||||||
Sbjct: 17632 tccgcctcccaagaagctgg 17651


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 87,556,568
Number of extensions: 4967476
Number of successful extensions: 112452
Number of sequences better than 10.0: 62
Number of HSP's gapped: 112448
Number of HSP's successfully gapped: 73
Length of query: 522
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 500
Effective length of database: 18,508,616,841
Effective search space: 9254308420500
Effective search space used: 9254308420500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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