| Clone Name | FLbaf52g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245112.1| Zea mays clone 13105 mRNA sequence Length = 638 Score = 184 bits (93), Expect = 2e-43 Identities = 153/173 (88%) Strand = Plus / Plus Query: 52 gatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctctt 111 ||||||||| || |||||||||||||||| ||| ||||| |||| || | |||||||||| Sbjct: 115 gatggcgctgactaacttcatcgtgacggtggccgtggttggcgcgggggtgcttctctt 174 Query: 112 cactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccgaca 171 ||| |||||| |||| | ||| |||||| |||||||||||||||| ||||| |||| || Sbjct: 175 caccaccgacatccgcaggtctggcgccctcttccgccgcaacgcgcgccagctccggca 234 Query: 172 gtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcag 224 |||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 235 gtggctcgaggaggacacggcctccgccgcgtccaagtctgcaaaagaagcag 287
>gb|AY104009.1| Zea mays PCO089454 mRNA sequence Length = 559 Score = 168 bits (85), Expect = 1e-38 Identities = 151/173 (87%) Strand = Plus / Plus Query: 52 gatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctctt 111 ||||||||| || |||||||||||||||| ||| ||||| |||| || | |||||||||| Sbjct: 80 gatggcgctgactaacttcatcgtgacggtggccgtggttggcgcgggggtgcttctctt 139 Query: 112 cactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccgaca 171 || |||||| |||| | ||| |||||| |||||||||||||||| ||||| |||| | Sbjct: 140 taccaccgacatccgcaggtctggcgccctcttccgccgcaacgcgcgccagctccggct 199 Query: 172 gtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcag 224 |||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 200 gtggctcgaggaggacacggcctccgccgcgtccaagtctgcaaaagaagcag 252
>ref|NM_001057707.1| Oryza sativa (japonica cultivar-group) Os03g0733000 (Os03g0733000) mRNA, complete cds Length = 494 Score = 135 bits (68), Expect = 2e-28 Identities = 187/227 (82%), Gaps = 6/227 (2%) Strand = Plus / Plus Query: 50 gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109 ||||||||||| ||||||||| | |||||| ||||| |||||||| |||| ||| ||| Sbjct: 53 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 112 Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169 ||||| |||||| |||| ||||||||||| | |||||||||||||||||||| || || Sbjct: 113 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 172 Query: 170 cagtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcagttccg 229 |||||||||||||| ||||||||||||| |||| ||| |||||||| ||| Sbjct: 173 gcctggctcgaggaggaatccgcctccgccgcgtccaggtcagcaaaagacgca------ 226 Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276 ||||||||||| ||| |||| || ||||| ||||| ||||||||||| Sbjct: 227 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 273
>dbj|AK120740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003O17, full insert sequence Length = 495 Score = 135 bits (68), Expect = 2e-28 Identities = 187/227 (82%), Gaps = 6/227 (2%) Strand = Plus / Plus Query: 50 gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109 ||||||||||| ||||||||| | |||||| ||||| |||||||| |||| ||| ||| Sbjct: 54 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 113 Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169 ||||| |||||| |||| ||||||||||| | |||||||||||||||||||| || || Sbjct: 114 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 173 Query: 170 cagtggctcgaggaggacaccgcctccgccgcatccaagtctgcaaaagaagcagttccg 229 |||||||||||||| ||||||||||||| |||| ||| |||||||| ||| Sbjct: 174 gcctggctcgaggaggaatccgcctccgccgcgtccaggtcagcaaaagacgca------ 227 Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276 ||||||||||| ||| |||| || ||||| ||||| ||||||||||| Sbjct: 228 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 274
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 50 gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109 ||||||||||| ||||||||| | |||||| ||||| |||||||| |||| ||| ||| Sbjct: 38981 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 39040 Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169 ||||| |||||| |||| ||||||||||| | |||||||||||||||||||| || || Sbjct: 39041 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 39100 Query: 170 cagtggctcgaggaggacaccgcctccgccgcatcca 206 |||||||||||||| ||||||||||||| |||| Sbjct: 39101 gcctggctcgaggaggaatccgcctccgccgcgtcca 39137 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276 ||||||||||| ||| |||| || ||||| ||||| ||||||||||| Sbjct: 40301 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 40347
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 50 gagatggcgctcaccaacttcatcgtgacggcggcggtggtgggcggggcgctgcttctc 109 ||||||||||| ||||||||| | |||||| ||||| |||||||| |||| ||| ||| Sbjct: 29823818 gagatggcgctgaccaacttcgtgctgacggtggcggcggtgggcgcggcggcgctcctc 29823759 Query: 110 ttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgccaaatccga 169 ||||| |||||| |||| ||||||||||| | |||||||||||||||||||| || || Sbjct: 29823758 ttcaccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgccagattcgt 29823699 Query: 170 cagtggctcgaggaggacaccgcctccgccgcatcca 206 |||||||||||||| ||||||||||||| |||| Sbjct: 29823698 gcctggctcgaggaggaatccgcctccgccgcgtcca 29823662 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 230 cctcccaagaagctggatggagagattcccaaggacaagccaaagga 276 ||||||||||| ||| |||| || ||||| ||||| ||||||||||| Sbjct: 29822498 cctcccaagaaactgaatggggatattccaaaggagaagccaaagga 29822452
>dbj|AK241866.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065217I20, full insert sequence Length = 3188 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200 ||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct: 169 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 228 Query: 201 c 201 | Sbjct: 229 c 229 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 gatggcgctcaccaacttcatcgtgacgg 80 ||||||||| |||||||||||| |||||| Sbjct: 80 gatggcgctgaccaacttcatcctgacgg 108
>ref|NM_001062589.1| Oryza sativa (japonica cultivar-group) Os05g0517800 (Os05g0517800) mRNA, complete cds Length = 234 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200 ||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct: 89 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 148 Query: 201 c 201 | Sbjct: 149 c 149 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 atggcgctcaccaacttcatcgtgacgg 80 |||||||| |||||||||||| |||||| Sbjct: 1 atggcgctgaccaacttcatcctgacgg 28
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200 ||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct: 103251 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 103310 Query: 201 c 201 | Sbjct: 103311 c 103311 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 gatggcgctcaccaacttcatcgtgacgg 80 ||||||||| |||||||||||| |||||| Sbjct: 103162 gatggcgctgaccaacttcatcctgacgg 103190
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 141 tcttccgccgcaacgcccgccaaatccgacagtggctcgaggaggacaccgcctccgccg 200 ||||||||||||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct: 25462890 tcttccgccgcaacgtccgccacatccgcaagtggctcgaggaggagtccgccgccgccg 25462949 Query: 201 c 201 | Sbjct: 25462950 c 25462950 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 gatggcgctcaccaacttcatcgtgacgg 80 ||||||||| |||||||||||| |||||| Sbjct: 25462801 gatggcgctgaccaacttcatcctgacgg 25462829
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 107 ctcttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgc 160 |||||| | |||||| |||| ||||||||||| | |||||||||||||||||| Sbjct: 26558672 ctcttcgccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgc 26558725
>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05 Length = 161934 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 107 ctcttcactaccgacgtccggaagtccggcgccgtcttccgccgcaacgcccgc 160 |||||| | |||||| |||| ||||||||||| | |||||||||||||||||| Sbjct: 32386 ctcttcgccaccgacatccgcaagtccggcgcgatgttccgccgcaacgcccgc 32439
>ref|XM_001225793.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_08138) mRNA, complete cds Length = 1194 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 78 cggcggcggtggtgggcggggcgc 101 |||||||||||||||||||||||| Sbjct: 313 cggcggcggtggtgggcggggcgc 290
>emb|CR933559.5| Zebrafish DNA sequence from clone DKEY-51M8 in linkage group 11, complete sequence Length = 119833 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 377 attgcatgactaatatgtttccattttgat 406 ||||||||||||||||||| ||||||||| Sbjct: 54842 attgcatgactaatatgttgacattttgat 54871
>emb|CR450766.5| Zebrafish DNA sequence from clone DKEY-192C10 in linkage group 8, complete sequence Length = 127307 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 aaaggatcattgaaatagacca 292 |||||||||||||||||||||| Sbjct: 57311 aaaggatcattgaaatagacca 57290
>gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complete sequence Length = 133221 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 69 tcatcgtgacggcggcggtggtgggc 94 |||||| ||||||||||||||||||| Sbjct: 34338 tcatcgagacggcggcggtggtgggc 34313
>emb|AJ335646.1|HSA335646 Homo sapiens genomic sequence surrounding NotI site, clone NR5-IL13R Length = 758 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 69 tcatcgtgacggcggcggtggtgggc 94 |||||| ||||||||||||||||||| Sbjct: 48 tcatcgagacggcggcggtggtgggc 23
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gtttccattttgatataagcatttt 417 |||||||||||||| |||||||||| Sbjct: 9525334 gtttccattttgatttaagcatttt 9525358
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 cggagatggcgctcaccaact 68 ||||||||||||||||||||| Sbjct: 3106733 cggagatggcgctcaccaact 3106713
>gb|AY273169.1| Rhodobacter capsulatus assimilatory nitrate reduction system, partial sequence Length = 17155 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 cgtgacggcggcggtggtggg 93 ||||||||||||||||||||| Sbjct: 14870 cgtgacggcggcggtggtggg 14890
>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence Length = 164461 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 gtttccattttgatataagcatttt 417 |||||||||||||| |||||||||| Sbjct: 28890 gtttccattttgatttaagcatttt 28866
>emb|AL162730.26| Human DNA sequence from clone RP11-265B8 on chromosome 9 Contains the 3' end of the PIP5K1B gene for phosphatidylinositol-4-phosphate 5-kinase, type I, beta (MSS4, STM7), the PRKACG gene for protein kinase, cAMP-dependent, catalytic, gamma (KAPG), the FRDA gene for Friedreich ataxia (FA, FARR), a novel gene and three CpG islands, complete sequence Length = 171381 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 ctgagtgatagagatttgtag 366 ||||||||||||||||||||| Sbjct: 65768 ctgagtgatagagatttgtag 65748
>emb|CR954196.1| Medicago truncatula chromosome 5 clone mth2-157e5, COMPLETE SEQUENCE Length = 132419 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 386 ctaatatgtttccattttgatataa 410 |||||||||||||||||| |||||| Sbjct: 100709 ctaatatgtttccattttaatataa 100733
>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23, complete sequence Length = 176610 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 gtttccattttgatataagcatttt 417 |||||||||||||| |||||||||| Sbjct: 147721 gtttccattttgatttaagcatttt 147745
>gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, complete sequence Length = 160138 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcctcccaagaagctggatgg 249 ||||||||||||||||||||| Sbjct: 131167 gcctcccaagaagctggatgg 131187
>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CIT987SK-334D11, complete sequence Length = 173882 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcctcccaagaagctggatgg 249 ||||||||||||||||||||| Sbjct: 14752 gcctcccaagaagctggatgg 14772
>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22, complete sequence Length = 183007 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 gtttccattttgatataagcatttt 417 |||||||||||||| |||||||||| Sbjct: 178783 gtttccattttgatttaagcatttt 178759
>ref|XM_665846.1| Plasmodium berghei strain ANKA hypothetical protein (PB301330.00.0) partial mRNA Length = 807 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 463 tattattttcttcatgacaac 483 ||||||||||||||||||||| Sbjct: 445 tattattttcttcatgacaac 425
>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome Length = 4744448 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ggcggtggtgggcggggcgctgct 105 ||||||||||| |||||||||||| Sbjct: 612779 ggcggtggtggccggggcgctgct 612802
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggtgggcggggcgctgct 105 |||||||||||||||||||| Sbjct: 426315 gtggtgggcggggcgctgct 426334
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 taagcattttggcgcttgtg 427 |||||||||||||||||||| Sbjct: 27099274 taagcattttggcgcttgtg 27099293
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtggtgggcggggcgctgct 105 |||||||||||||||||||| Sbjct: 586419 gtggtgggcggggcgctgct 586400 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggtgggcggggcgctgct 105 |||||||||||||||||||| Sbjct: 1974977 gtggtgggcggggcgctgct 1974996
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 acggcggcggtggtgggcggggcg 100 ||||||| |||||||||||||||| Sbjct: 1234071 acggcggtggtggtgggcggggcg 1234094
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gtctggccgccgccacgaca 22 |||||||||||||||||||| Sbjct: 837789 gtctggccgccgccacgaca 837808
>gb|AC008221.5| Drosophila melanogaster clone BACR30B13, complete sequence Length = 184278 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 taagcattttggcgcttgtg 427 |||||||||||||||||||| Sbjct: 110948 taagcattttggcgcttgtg 110967
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccgtcttccgccgcaacgcc 157 |||||||||||||||||||| Sbjct: 566940 ccgtcttccgccgcaacgcc 566921
>ref|XM_740919.1| Plasmodium chabaudi chabaudi DNA repair protein (PC000601.02.0) partial mRNA Length = 3411 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 taatatgtttccattttgat 406 |||||||||||||||||||| Sbjct: 1061 taatatgtttccattttgat 1080
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cgtgacggcggcggtggtgg 92 |||||||||||||||||||| Sbjct: 33025 cgtgacggcggcggtggtgg 33044
>gb|AC078858.8| Homo sapiens 3 BAC RP11-582I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96298 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 ttttcttcatgacaacctat 487 |||||||||||||||||||| Sbjct: 64704 ttttcttcatgacaacctat 64723
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgtccggaagtccggcgccg 140 |||||||||||||||||||| Sbjct: 19303032 cgtccggaagtccggcgccg 19303051 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgtccggaagtccggcgccg 140 |||||||||||||||||||| Sbjct: 19312483 cgtccggaagtccggcgccg 19312502
>gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, complete sequence Length = 195191 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 123681 tccgcctcccaagaagctgg 123662
>emb|AL442644.7| Human DNA sequence from clone RP11-342F21 on chromosome 9 Contains a novel pseudogene, and the 5' end of a novel gene, complete sequence Length = 160264 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 catgactaatatgtttccat 400 |||||||||||||||||||| Sbjct: 9529 catgactaatatgtttccat 9510
>emb|AL360230.20| Human DNA sequence from clone RP11-379I13 on chromosome 10 Contains the PTER gene for phosphotriesterase related, the 3' end of the gene for a novel protein possible ortholog of mouse C1q-like protein (gliacolin) and a CpG island, complete sequence Length = 162599 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 46608 tccgcctcccaagaagctgg 46627
>emb|AL158164.15| Human DNA sequence from clone RP11-414K1 on chromosome 10 Contains the 3' end of the gene for the likely ortholog of mouse sialyltransferase 8-VI (alpha-2 8-sialytransferase) (ST8SIA-VI), a novel gene and the 5' end of a novel gene, complete sequence Length = 151289 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 111045 tccgcctcccaagaagctgg 111026
>emb|AL137003.12| Human DNA sequence from clone RP1-151F17 on chromosome 6 Contains the 3' end of the SCA1 gene for spinocerebellar ataxia 1n(olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1), complete sequence Length = 113802 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gcctcccaagaagctggatg 248 |||||||||||||||||||| Sbjct: 102673 gcctcccaagaagctggatg 102654
>emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L22 on chromosome 20 Contains the 3' end of the GDAP1L1 gene for ganglioside-induced differentiation-associated protein 1-like 1, the R3HDML gene for R3HDML domain containing-like, the C20orf142 gene, three novel genes, the 5' end of one variant of the HNF4A gene for hepatocyte nuclear factor 4 and two CpG islands, complete sequence Length = 131841 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 102094 tccgcctcccaagaagctgg 102113
>emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15 on chromosome 6p11.2-12.3 Contains the 3' end of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052), complete sequence Length = 118431 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 15045 tccgcctcccaagaagctgg 15026
>emb|CR450814.4| Zebrafish DNA sequence from clone CH211-157B11 in linkage group 6, complete sequence Length = 158142 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 cattttgatataagcatttt 417 |||||||||||||||||||| Sbjct: 130151 cattttgatataagcatttt 130170
>gb|AY057451.1| Fundulus heteroclitus Sp3 transcription factor mRNA, partial cds Length = 2071 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tgacggcggcggtggtgggcgggg 98 |||||||| ||||||||||||||| Sbjct: 1759 tgacggcgtcggtggtgggcgggg 1736
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggtgggcggggcgctgct 105 |||||||||||||||||||| Sbjct: 814028 gtggtgggcggggcgctgct 814047
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgtccggaagtccggcgccg 140 |||||||||||||||||||| Sbjct: 84864 cgtccggaagtccggcgccg 84883 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgtccggaagtccggcgccg 140 |||||||||||||||||||| Sbjct: 94315 cgtccggaagtccggcgccg 94334
>emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BAC clone T12K4 Length = 108879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tgatagagatttgtagctca 370 |||||||||||||||||||| Sbjct: 64678 tgatagagatttgtagctca 64659
>emb|CR936501.3| Mouse DNA sequence from clone RP24-121C24 on chromosome X, complete sequence Length = 4677 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgactaatatgtttccattt 402 |||||||||||||||||||| Sbjct: 1128 tgactaatatgtttccattt 1109
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116556 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 agttccgcctcccaagaagctgga 246 |||||||||||||||| ||||||| Sbjct: 73829 agttccgcctcccaagtagctgga 73806
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccggcgccgtcttccgccgc 151 |||||||||||||||||||| Sbjct: 59058 ccggcgccgtcttccgccgc 59077
>emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chromosome X, complete sequence Length = 35468 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgactaatatgtttccattt 402 |||||||||||||||||||| Sbjct: 34596 tgactaatatgtttccattt 34577
>gb|AC090286.16| Homo sapiens chromosome 17, clone RP11-28B23, complete sequence Length = 168956 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 105285 tccgcctcccaagaagctgg 105266
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gtgacggcggcggtggtggg 93 |||||||||||||||||||| Sbjct: 1783640 gtgacggcggcggtggtggg 1783659
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 456 aattggctattattttcttcatga 479 |||||||||||||||| ||||||| Sbjct: 1029679 aattggctattatttttttcatga 1029656
>gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete sequence Length = 115967 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcctcccaagaagctggatg 248 |||||||||||||||||||| Sbjct: 38539 gcctcccaagaagctggatg 38558
>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete sequence Length = 196773 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tgactaatatgtttccattt 402 |||||||||||||||||||| Sbjct: 153258 tgactaatatgtttccattt 153277
>gb|AC105030.11| Homo sapiens chromosome 17, clone CTD-2244F11, complete sequence Length = 107848 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tccgcctcccaagaagctgg 245 |||||||||||||||||||| Sbjct: 17632 tccgcctcccaagaagctgg 17651 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 87,556,568 Number of extensions: 4967476 Number of successful extensions: 112452 Number of sequences better than 10.0: 62 Number of HSP's gapped: 112448 Number of HSP's successfully gapped: 73 Length of query: 522 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 500 Effective length of database: 18,508,616,841 Effective search space: 9254308420500 Effective search space used: 9254308420500 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)