ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf49m24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001055904.1| Oryza sativa (japonica cultivar-group) Os03g0214100 (Os03g0214100) mRNA, complete cds Length = 2260 Score = 1084 bits (547), Expect = 0.0 Identities = 1159/1363 (85%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaa 242 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| || | Sbjct: 512 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcgcggca 571 Query: 243 atgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctga 302 |||||||||| || || || ||||||||||| || | || |||||| |||||||||||| Sbjct: 572 atgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctga 631 Query: 303 acccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggt 362 ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| Sbjct: 632 acccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgagga 691 Query: 363 catacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactgacgaggatg 422 | |||| |||||| ||||| |||||| |||||||| || ||||||||||| | ||||| Sbjct: 692 cgtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactgatgtggatg 751 Query: 423 gcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgtttg 482 ||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct: 752 gcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgtttg 811 Query: 483 agcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttca 542 |||| |||||||| ||||||||||||||||| || || ||| | || ||||||||||||| Sbjct: 812 agctggggaaggtgtactacatctccaaaggatctctcagagtcgccaacaagcagttca 871 Query: 543 agacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagctg 602 |||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 872 agactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagctg 931 Query: 603 agggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctggggc 662 |||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| |||| Sbjct: 932 agggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctagggc 991 Query: 663 catatgttggtggcagggagttagtagatatcattggtgttgttcagagtgtatcaccta 722 |||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||| |||| Sbjct: 992 catatgttggtggcagggagctagtagatgttattggggttgttcagagcgtatctccta 1051 Query: 723 ctctgagtatcagaaggaagatcgacaatgagtcaattccaaagcgtgacattgttgttg 782 |||| ||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| | Sbjct: 1052 ctcttagtgttaggaggaagattgacaacgagacgattccaaagcgtgacatcgttgtag 1111 Query: 783 cagatgactcaaacaagaccgtcacagtttctctttggaatgatcttgccaccactcttg 842 | |||||||| | ||| || || || | ||||||||||||||||||||||| ||| || Sbjct: 1112 cggatgactcgagcaaaactgtaaccatatctctttggaatgatcttgccacaactactg 1171 Query: 843 gtgaagagctgttggacatggttgactctgcacctatcgttgcaatcaagagcctgaaag 902 || | ||||| ||||||||||| |||||||| |||||| |||| || |||||||| |||| Sbjct: 1172 gtcaggagctcttggacatggtagactctgcgcctatcattgcgataaagagcctaaaag 1231 Query: 903 tatctgactttcaaggcgtgtctgtctctacagtaggcaagagtacacttgttattaacc 962 |||||||||| ||||| ||||| | || || || || | |||||| |||| | || | Sbjct: 1232 tatctgacttccaaggtttgtctctgtcaactgtggggagaagtacaattgtagtgaatc 1291 Query: 963 cagagttgcctgagactgagaagcttagagcctggtatgaatctgaaggcaagggtactt 1022 | || ||||||||| | || |||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1292 ctgacttgcctgaggcagaacagctcagagcttggtatgactctgaaggcaagggtactt 1351 Query: 1023 ccttggcatcagttggtgctggaatgggtgcatccagcgctggtggtttgagatcaatgt 1082 | |||||||| ||||| | | ||||| ||||| || | |||||| |||||| |||| Sbjct: 1352 caatggcatcaattggttcagatatgggcgcatcaagggttggtggcgcgagatccatgt 1411 Query: 1083 actctgacagagtttttctgtctcacatcacaagtgaccctaacttgggccaggataagc 1142 || ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 1412 acagtgatagagtttttctgtctcacatcacaagtgaccccaacttgggtcaggataagc 1471 Query: 1143 ctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgtggt 1202 |||| |||||||| ||| |||| | || |||| |||||||||||||| |||||||||| Sbjct: 1472 ctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgtggt 1531 Query: 1203 accgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatactggt 1262 |||| ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| Sbjct: 1532 accgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatactggt 1591 Query: 1263 gtgaagggtgccagaagaactatgaggagtgctcgttgaggtacatcatggtgatcaagg 1322 ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||| Sbjct: 1592 gtgaagggtgccagaagaatgatgctgagtgctcactgaggtacatcatggtcatcaagg 1651 Query: 1323 tctctgatccaacaggtgaggcctggctgtcccttttcaatgaccaagcagagaggattg 1382 |||| || || || |||||||||||||| || || |||||||| || ||||||||||||| Sbjct: 1652 tctccgaccctactggtgaggcctggctttctctgttcaatgatcaggcagagaggattg 1711 Query: 1383 tcggctgcagtgcagataatcttgatcggatcagaaaagaggagggcgatgacatgttcc 1442 | ||||||||||||||| | ||||||||||| || || |||||||| ||||||| | || Sbjct: 1712 ttggctgcagtgcagatgagcttgatcggattaggaaggaggagggtgatgacagttacc 1771 Query: 1443 agctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcaga 1502 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | |||| Sbjct: 1772 ttctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcaga 1831 Query: 1503 acgagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 | ||||||||| |||||||||||||||||||| |||||||| Sbjct: 1832 atgagtacatgaatgagaagaggcagaggatcactgtgaggag 1874
>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full insert sequence Length = 2221 Score = 1076 bits (543), Expect = 0.0 Identities = 1158/1363 (84%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaa 242 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| || | Sbjct: 547 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcgcggca 606 Query: 243 atgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctga 302 |||||||||| || || || ||||||||||| || | || |||||| |||||||||||| Sbjct: 607 atgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctga 666 Query: 303 acccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggt 362 ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| Sbjct: 667 acccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgagga 726 Query: 363 catacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactgacgaggatg 422 | |||| |||||| ||||| |||||| |||||||| || ||||||||||| | ||||| Sbjct: 727 cgtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactgatgtggatg 786 Query: 423 gcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgtttg 482 ||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct: 787 gcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgtttg 846 Query: 483 agcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttca 542 |||| |||||||| ||||||||||||||||| || || ||| | || ||||||||||||| Sbjct: 847 agctggggaaggtgtactacatctccaaaggatccctcagagtcgccaacaagcagttca 906 Query: 543 agacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagctg 602 |||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 907 agactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagctg 966 Query: 603 agggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctggggc 662 |||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| |||| Sbjct: 967 agggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctagggc 1026 Query: 663 catatgttggtggcagggagttagtagatatcattggtgttgttcagagtgtatcaccta 722 |||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||| |||| Sbjct: 1027 catatgttggtggcagggagctagtagatgttattggggttgttcagagcgtatctccta 1086 Query: 723 ctctgagtatcagaaggaagatcgacaatgagtcaattccaaagcgtgacattgttgttg 782 |||| ||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| | Sbjct: 1087 ctcttagtgttaggaggaagattgacaacgagacgattccaaagcgtgacatcgttgtag 1146 Query: 783 cagatgactcaaacaagaccgtcacagtttctctttggaatgatcttgccaccactcttg 842 | |||||||| | ||| || || || | ||||||||||||||||||||||| ||| || Sbjct: 1147 cggatgactcgagcaaaactgtaaccatatctctttggaatgatcttgccacaactactg 1206 Query: 843 gtgaagagctgttggacatggttgactctgcacctatcgttgcaatcaagagcctgaaag 902 || | ||||| ||||||||||| |||||||| |||||| |||| || |||||||| |||| Sbjct: 1207 gtcaggagctcttggacatggtagactctgcgcctatcattgcgataaagagcctaaaag 1266 Query: 903 tatctgactttcaaggcgtgtctgtctctacagtaggcaagagtacacttgttattaacc 962 |||||||||| ||||| ||||| | || || || || | |||||| |||| | || | Sbjct: 1267 tatctgacttccaaggtttgtctctgtcaactgtggggagaagtacaattgtagtgaatc 1326 Query: 963 cagagttgcctgagactgagaagcttagagcctggtatgaatctgaaggcaagggtactt 1022 | || ||||||||| | || |||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1327 ctgacttgcctgaggcagaacagctcagagcttggtatgactctgaaggcaagggtactt 1386 Query: 1023 ccttggcatcagttggtgctggaatgggtgcatccagcgctggtggtttgagatcaatgt 1082 | |||||||| ||||| | | ||||| ||||| || | |||||| |||||| |||| Sbjct: 1387 caatggcatcaattggttcagatatgggcgcatcaagggttggtggcgcgagatccatgt 1446 Query: 1083 actctgacagagtttttctgtctcacatcacaagtgaccctaacttgggccaggataagc 1142 || ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 1447 acagtgatggagtttttctgtctcacatcacaagtgaccccaacttgggtcaggataagc 1506 Query: 1143 ctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgtggt 1202 |||| |||||||| ||| |||| | || |||| |||||||||||||| |||||||||| Sbjct: 1507 ctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgtggt 1566 Query: 1203 accgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatactggt 1262 |||| ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| Sbjct: 1567 accgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatactggt 1626 Query: 1263 gtgaagggtgccagaagaactatgaggagtgctcgttgaggtacatcatggtgatcaagg 1322 ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||| Sbjct: 1627 gtgaagggtgccagaagaatgatgctgagtgctcactgaggtacatcatggtcatcaagg 1686 Query: 1323 tctctgatccaacaggtgaggcctggctgtcccttttcaatgaccaagcagagaggattg 1382 |||| || || || |||||||||||||| || || |||||||| || ||||||||||||| Sbjct: 1687 tctccgaccctactggtgaggcctggctttctctgttcaatgatcaggcagagaggattg 1746 Query: 1383 tcggctgcagtgcagataatcttgatcggatcagaaaagaggagggcgatgacatgttcc 1442 | ||||||||||||||| | ||||||||||| || || |||||||| ||||||| | || Sbjct: 1747 ttggctgcagtgcagatgagcttgatcggattaggaaggaggagggtgatgacagttacc 1806 Query: 1443 agctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcaga 1502 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | |||| Sbjct: 1807 ttctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcaga 1866 Query: 1503 acgagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 | ||||||||| |||||||||||||||||||| |||||||| Sbjct: 1867 atgagtacatgaatgagaagaggcagaggatcactgtgaggag 1909
>gb|AF009179.1|AF009179 Oryza sativa replication protein A1 (Os-RPA1) mRNA, complete cds Length = 2274 Score = 1076 bits (543), Expect = 0.0 Identities = 1158/1363 (84%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaa 242 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| || | Sbjct: 512 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcgcggca 571 Query: 243 atgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctga 302 |||||||||| || || || ||||||||||| || | || |||||| |||||||||||| Sbjct: 572 atgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctga 631 Query: 303 acccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggt 362 ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| Sbjct: 632 acccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgagga 691 Query: 363 catacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactgacgaggatg 422 | |||| |||||| ||||| |||||| |||||||| || ||||||||||| | ||||| Sbjct: 692 cgtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactgatgtggatg 751 Query: 423 gcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgtttg 482 ||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct: 752 gcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgtttg 811 Query: 483 agcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttca 542 |||| |||||||| ||||||||||||||||| || || ||| | || ||||||||||||| Sbjct: 812 agctggggaaggtgtactacatctccaaaggatctctcagagtcgccaacaagcagttca 871 Query: 543 agacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagctg 602 |||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 872 agactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagctg 931 Query: 603 agggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctggggc 662 |||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| |||| Sbjct: 932 agggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctagggc 991 Query: 663 catatgttggtggcagggagttagtagatatcattggtgttgttcagagtgtatcaccta 722 |||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||| |||| Sbjct: 992 catatgttggtggcagggagctagtagatgttattggggttgttcagagcgtatctccta 1051 Query: 723 ctctgagtatcagaaggaagatcgacaatgagtcaattccaaagcgtgacattgttgttg 782 |||| ||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| | Sbjct: 1052 ctcttagtgttaggaggaagattgacaacgagacgattccaaagcgtgacatcgttgtag 1111 Query: 783 cagatgactcaaacaagaccgtcacagtttctctttggaatgatcttgccaccactcttg 842 | |||||||| | ||| || || || | ||||||||||||||||||||||| ||| || Sbjct: 1112 cggatgactcgagcaaaactgtaaccatatctctttggaatgatcttgccacaactactg 1171 Query: 843 gtgaagagctgttggacatggttgactctgcacctatcgttgcaatcaagagcctgaaag 902 || | ||||| ||||||||||| |||||||| |||||| |||| || |||||||| |||| Sbjct: 1172 gtcaggagctcttggacatggtagactctgcgcctatcattgcgataaagagcctaaaag 1231 Query: 903 tatctgactttcaaggcgtgtctgtctctacagtaggcaagagtacacttgttattaacc 962 |||||||||| ||||| ||||| | || || || || | |||||| |||| | || | Sbjct: 1232 tatctgacttccaaggtttgtctctgtcaactgtggggagaagtacaattgtagtgaatc 1291 Query: 963 cagagttgcctgagactgagaagcttagagcctggtatgaatctgaaggcaagggtactt 1022 | || ||||||||| | || |||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1292 ctgacttgcctgaggcagaacagctcagagcttggtatgactctgaaggcaagggtactt 1351 Query: 1023 ccttggcatcagttggtgctggaatgggtgcatccagcgctggtggtttgagatcaatgt 1082 | |||||||| ||||| | | ||||| ||||| || | |||||| |||||| |||| Sbjct: 1352 caatggcatcaattggttcagatatgggcgcatcaagggttggtggcgcgagatccatgt 1411 Query: 1083 actctgacagagtttttctgtctcacatcacaagtgaccctaacttgggccaggataagc 1142 || ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 1412 acagtgatagagtttttctgtctcacatcacaagtgaccccaacttgggtcaggataagc 1471 Query: 1143 ctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgtggt 1202 |||| |||||||| ||| |||| | || |||| |||||||||||||| |||||||||| Sbjct: 1472 ctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgtggt 1531 Query: 1203 accgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatactggt 1262 |||| ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| Sbjct: 1532 accgagcttgcaagacctgcaacaagaaggtgactgaggcaatgggatcaggatactggt 1591 Query: 1263 gtgaagggtgccagaagaactatgaggagtgctcgttgaggtacatcatggtgatcaagg 1322 ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||| Sbjct: 1592 gtgaagggtgccagaagaatgatgctgagtgctcactgaggtacatcatggtcatcaagg 1651 Query: 1323 tctctgatccaacaggtgaggcctggctgtcccttttcaatgaccaagcagagaggattg 1382 |||| || || || |||||||||||||| || || |||||||| || ||||||||||||| Sbjct: 1652 tctccgaccctactggtgaggcctggctttctctgttcaatgatcaggcagagaggattg 1711 Query: 1383 tcggctgcagtgcagataatcttgatcggatcagaaaagaggagggcgatgacatgttcc 1442 | |||||||||||||| | ||||||||||| || || |||||||| ||||||| | || Sbjct: 1712 ttggctgcagtgcagacgagcttgatcggattaggaaggaggagggtgatgacagttacc 1771 Query: 1443 agctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcaga 1502 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | |||| Sbjct: 1772 ttctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcaga 1831 Query: 1503 acgagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 | ||||||||| |||||||||||||||||||| |||||||| Sbjct: 1832 atgagtacatgaatgagaagaggcagaggatcactgtgaggag 1874
>dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication protein A 70b, complete cds Length = 1928 Score = 1068 bits (539), Expect = 0.0 Identities = 1157/1363 (84%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaa 242 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| || | Sbjct: 465 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcgcggca 524 Query: 243 atgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctga 302 |||||||||| || || || ||||||||||| || | || |||||| |||||||||||| Sbjct: 525 atgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctga 584 Query: 303 acccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggt 362 ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| Sbjct: 585 acccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgagga 644 Query: 363 catacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactgacgaggatg 422 | |||| |||||| ||||| |||||| |||||||| || ||||||||||| | ||||| Sbjct: 645 cgtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactgatgtggatg 704 Query: 423 gcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgtttg 482 ||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct: 705 gcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgtttg 764 Query: 483 agcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttca 542 |||| |||||||| ||||||||||||||||| || || ||| | || |||||||||||| Sbjct: 765 agctggggaaggtgtactacatctccaaaggatctctcagagtcgccgacaagcagttca 824 Query: 543 agacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagctg 602 |||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 825 agactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagctg 884 Query: 603 agggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctggggc 662 |||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| |||| Sbjct: 885 agggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctagggc 944 Query: 663 catatgttggtggcagggagttagtagatatcattggtgttgttcagagtgtatcaccta 722 |||||||||||||||||||| |||||||| | ||||| ||||||||||| ||||| |||| Sbjct: 945 catatgttggtggcagggagctagtagatgttattggggttgttcagagcgtatctccta 1004 Query: 723 ctctgagtatcagaaggaagatcgacaatgagtcaattccaaagcgtgacattgttgttg 782 |||| ||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| | Sbjct: 1005 ctcttagtgttaggaggaagattgacaacgagacgattccaaagcgtgacatcgttgtag 1064 Query: 783 cagatgactcaaacaagaccgtcacagtttctctttggaatgatcttgccaccactcttg 842 | |||||||| | ||| || || || | ||||||||||||||||||||||| ||| || Sbjct: 1065 cggatgactcgagcaaaactgtaaccatatctctttggaatgatcttgccacaactactg 1124 Query: 843 gtgaagagctgttggacatggttgactctgcacctatcgttgcaatcaagagcctgaaag 902 || | ||||| ||||||||||| |||||||| |||||| |||| || |||||||| |||| Sbjct: 1125 gtcaggagctcttggacatggtagactctgcgcctatcattgcgataaagagcctaaaag 1184 Query: 903 tatctgactttcaaggcgtgtctgtctctacagtaggcaagagtacacttgttattaacc 962 |||||||||| ||||| ||||| | || || || || | |||||| |||| | || | Sbjct: 1185 tatctgacttccaaggtttgtctctgtcaactgtggggagaagtacaattgtactgaatc 1244 Query: 963 cagagttgcctgagactgagaagcttagagcctggtatgaatctgaaggcaagggtactt 1022 | || ||||||||| | || |||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1245 ctgacttgcctgaggcagaacagctcagagcttggtatgactctgaaggcaagggtactt 1304 Query: 1023 ccttggcatcagttggtgctggaatgggtgcatccagcgctggtggtttgagatcaatgt 1082 | |||||||| ||||| | | ||||| ||||| || | |||||| |||||| |||| Sbjct: 1305 caatggcatcaattggttcagatatgggcgcatcaagggttggtggcgcgagatccatgt 1364 Query: 1083 actctgacagagtttttctgtctcacatcacaagtgaccctaacttgggccaggataagc 1142 || ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 1365 acagtgatagagtttttctgtctcacatcacaagtgaccccaacttgggtcaggataagc 1424 Query: 1143 ctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgtggt 1202 |||| |||||||| ||| |||| | || |||| |||||||||||||| |||||||||| Sbjct: 1425 ctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgtggt 1484 Query: 1203 accgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatactggt 1262 |||| ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| Sbjct: 1485 accgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatactggt 1544 Query: 1263 gtgaagggtgccagaagaactatgaggagtgctcgttgaggtacatcatggtgatcaagg 1322 ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||| Sbjct: 1545 gtgaagggtgccagaagaatgatgctgagtgctcactgaggtacatcatggtcatcaagg 1604 Query: 1323 tctctgatccaacaggtgaggcctggctgtcccttttcaatgaccaagcagagaggattg 1382 |||| || || || |||||||||||||| || || |||||||| || ||||||||||||| Sbjct: 1605 tctccgaccctactggtgaggcctggctttctctgttcaatgatcaggcagagaggattg 1664 Query: 1383 tcggctgcagtgcagataatcttgatcggatcagaaaagaggagggcgatgacatgttcc 1442 | |||||||||||||| | ||||||||||| || || |||||||| ||||||| | || Sbjct: 1665 ttggctgcagtgcagacgagcttgatcggattaggaaggaggagggtgatgacagttacc 1724 Query: 1443 agctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcaga 1502 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | |||| Sbjct: 1725 ttctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcaga 1784 Query: 1503 acgagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 | ||||||||| |||||||||||||||||||| |||||||| Sbjct: 1785 atgagtacatgaatgagaagaggcagaggatcactgtgaggag 1827
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 278 bits (140), Expect = 7e-71 Identities = 236/268 (88%) Strand = Plus / Plus Query: 422 ggcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgttt 481 |||||||| |||||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct: 5948328 ggcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgttt 5948387 Query: 482 gagcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttc 541 ||||| |||||||| ||||||||||||||||| || || ||| | || |||||||||||| Sbjct: 5948388 gagctggggaaggtgtactacatctccaaaggatctctcagagtcgccaacaagcagttc 5948447 Query: 542 aagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagct 601 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 5948448 aagactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagct 5948507 Query: 602 gagggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctgggg 661 ||||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| ||| Sbjct: 5948508 gagggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctaggg 5948567 Query: 662 ccatatgttggtggcagggagttagtag 689 ||||||||||||||||||||| |||||| Sbjct: 5948568 ccatatgttggtggcagggagctagtag 5948595 Score = 155 bits (78), Expect = 7e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 1140 agcctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgt 1199 ||||||| |||||||| ||| |||| | || |||| |||||||||||||| ||||||| Sbjct: 5949498 agcctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgt 5949557 Query: 1200 ggtaccgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatact 1259 ||||||| ||||||| |||||||||||||||||||| |||||| | ||||||||||||| Sbjct: 5949558 ggtaccgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatact 5949617 Query: 1260 ggtgtgaagggtgccagaagaa 1281 |||||||||||||||||||||| Sbjct: 5949618 ggtgtgaagggtgccagaagaa 5949639 Score = 141 bits (71), Expect = 1e-29 Identities = 146/171 (85%) Strand = Plus / Plus Query: 244 tgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctgaa 303 ||||||||| || || || ||||||||||| || | || |||||| ||||||||||||| Sbjct: 5948036 tgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctgaa 5948095 Query: 304 cccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggtc 363 |||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| | Sbjct: 5948096 cccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgaggac 5948155 Query: 364 atacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactga 414 |||| |||||| ||||| |||||| |||||||| || ||||||||||| Sbjct: 5948156 gtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactga 5948206 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 996 ggtatgaatctgaaggcaagggtacttccttggcatcagttggtgctggaatgggtgcat 1055 ||||||| |||||||||||||||||||| |||||||| ||||| | | ||||| |||| Sbjct: 5949249 ggtatgactctgaaggcaagggtacttcaatggcatcaattggttcagatatgggcgcat 5949308 Query: 1056 ccagcgctggtggtttgagatcaatgtactctgacagagtttttctgtctcacatcacaa 1115 | || | |||||| |||||| |||||| ||| ||||||||||||||||||||||||| Sbjct: 5949309 caagggttggtggcgcgagatccatgtacagtgatagagtttttctgtctcacatcacaa 5949368 Query: 1116 gtgaccctaacttgggccaggataag 1141 ||||||| |||||||| ||||||||| Sbjct: 5949369 gtgaccccaacttgggtcaggataag 5949394 Score = 121 bits (61), Expect = 1e-23 Identities = 100/113 (88%) Strand = Plus / Plus Query: 1301 aggtacatcatggtgatcaaggtctctgatccaacaggtgaggcctggctgtcccttttc 1360 |||||||||||||| ||||||||||| || || || |||||||||||||| || || ||| Sbjct: 5949748 aggtacatcatggtcatcaaggtctccgaccctactggtgaggcctggctttctctgttc 5949807 Query: 1361 aatgaccaagcagagaggattgtcggctgcagtgcagataatcttgatcggat 1413 ||||| || |||||||||||||| ||||||||||||||| | ||||||||||| Sbjct: 5949808 aatgatcaggcagagaggattgttggctgcagtgcagatgagcttgatcggat 5949860 Score = 109 bits (55), Expect = 4e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 812 tctctttggaatgatcttgccaccactcttggtgaagagctgttggacatggttgactct 871 ||||||||||||||||||||||| ||| |||| | ||||| ||||||||||| |||||| Sbjct: 5948901 tctctttggaatgatcttgccacaactactggtcaggagctcttggacatggtagactct 5948960 Query: 872 gcacctatcgttgcaatcaagagcctgaaagtatctgactttcaagg 918 || |||||| |||| || |||||||| |||||||||||||| ||||| Sbjct: 5948961 gcgcctatcattgcgataaagagcctaaaagtatctgacttccaagg 5949007 Score = 105 bits (53), Expect = 6e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 1445 ctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcagaac 1504 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | ||||| Sbjct: 5950102 ctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcagaat 5950161 Query: 1505 gagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 ||||||||| |||||||||||||||||||| |||||||| Sbjct: 5950162 gagtacatgaatgagaagaggcagaggatcactgtgaggag 5950202 Score = 83.8 bits (42), Expect = 2e-12 Identities = 84/98 (85%) Strand = Plus / Plus Query: 695 attggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||| ||||||||||| ||||| |||||||| ||| | || |||||||| ||||| ||| Sbjct: 5948689 attggggttgttcagagcgtatctcctactcttagtgttaggaggaagattgacaacgag 5948748 Query: 755 tcaattccaaagcgtgacattgttgttgcagatgactc 792 | ||||||||||||||||| ||||| || |||||||| Sbjct: 5948749 acgattccaaagcgtgacatcgttgtagcggatgactc 5948786 Score = 61.9 bits (31), Expect = 8e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcg 237 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| Sbjct: 5947871 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcg 5947925
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02, complete sequence Length = 128535 Score = 278 bits (140), Expect = 7e-71 Identities = 236/268 (88%) Strand = Plus / Plus Query: 422 ggcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgttt 481 |||||||| |||||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct: 98737 ggcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgttt 98796 Query: 482 gagcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttc 541 ||||| |||||||| ||||||||||||||||| || || ||| | || |||||||||||| Sbjct: 98797 gagctggggaaggtgtactacatctccaaaggatctctcagagtcgccaacaagcagttc 98856 Query: 542 aagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagct 601 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 98857 aagactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagct 98916 Query: 602 gagggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctgggg 661 ||||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| ||| Sbjct: 98917 gagggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctaggg 98976 Query: 662 ccatatgttggtggcagggagttagtag 689 ||||||||||||||||||||| |||||| Sbjct: 98977 ccatatgttggtggcagggagctagtag 99004 Score = 155 bits (78), Expect = 7e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 1140 agcctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgt 1199 ||||||| |||||||| ||| |||| | || |||| |||||||||||||| ||||||| Sbjct: 99907 agcctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgt 99966 Query: 1200 ggtaccgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatact 1259 ||||||| ||||||| |||||||||||||||||||| |||||| | ||||||||||||| Sbjct: 99967 ggtaccgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatact 100026 Query: 1260 ggtgtgaagggtgccagaagaa 1281 |||||||||||||||||||||| Sbjct: 100027 ggtgtgaagggtgccagaagaa 100048 Score = 141 bits (71), Expect = 1e-29 Identities = 146/171 (85%) Strand = Plus / Plus Query: 244 tgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctgaa 303 ||||||||| || || || ||||||||||| || | || |||||| ||||||||||||| Sbjct: 98445 tgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctgaa 98504 Query: 304 cccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggtc 363 |||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| | Sbjct: 98505 cccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgaggac 98564 Query: 364 atacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactga 414 |||| |||||| ||||| |||||| |||||||| || ||||||||||| Sbjct: 98565 gtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactga 98615 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 996 ggtatgaatctgaaggcaagggtacttccttggcatcagttggtgctggaatgggtgcat 1055 ||||||| |||||||||||||||||||| |||||||| ||||| | | ||||| |||| Sbjct: 99658 ggtatgactctgaaggcaagggtacttcaatggcatcaattggttcagatatgggcgcat 99717 Query: 1056 ccagcgctggtggtttgagatcaatgtactctgacagagtttttctgtctcacatcacaa 1115 | || | |||||| |||||| |||||| ||| ||||||||||||||||||||||||| Sbjct: 99718 caagggttggtggcgcgagatccatgtacagtgatagagtttttctgtctcacatcacaa 99777 Query: 1116 gtgaccctaacttgggccaggataag 1141 ||||||| |||||||| ||||||||| Sbjct: 99778 gtgaccccaacttgggtcaggataag 99803 Score = 121 bits (61), Expect = 1e-23 Identities = 100/113 (88%) Strand = Plus / Plus Query: 1301 aggtacatcatggtgatcaaggtctctgatccaacaggtgaggcctggctgtcccttttc 1360 |||||||||||||| ||||||||||| || || || |||||||||||||| || || ||| Sbjct: 100157 aggtacatcatggtcatcaaggtctccgaccctactggtgaggcctggctttctctgttc 100216 Query: 1361 aatgaccaagcagagaggattgtcggctgcagtgcagataatcttgatcggat 1413 ||||| || |||||||||||||| ||||||||||||||| | ||||||||||| Sbjct: 100217 aatgatcaggcagagaggattgttggctgcagtgcagatgagcttgatcggat 100269 Score = 109 bits (55), Expect = 4e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 812 tctctttggaatgatcttgccaccactcttggtgaagagctgttggacatggttgactct 871 ||||||||||||||||||||||| ||| |||| | ||||| ||||||||||| |||||| Sbjct: 99310 tctctttggaatgatcttgccacaactactggtcaggagctcttggacatggtagactct 99369 Query: 872 gcacctatcgttgcaatcaagagcctgaaagtatctgactttcaagg 918 || |||||| |||| || |||||||| |||||||||||||| ||||| Sbjct: 99370 gcgcctatcattgcgataaagagcctaaaagtatctgacttccaagg 99416 Score = 105 bits (53), Expect = 6e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 1445 ctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcagaac 1504 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | ||||| Sbjct: 100511 ctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcagaat 100570 Query: 1505 gagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 ||||||||| |||||||||||||||||||| |||||||| Sbjct: 100571 gagtacatgaatgagaagaggcagaggatcactgtgaggag 100611 Score = 83.8 bits (42), Expect = 2e-12 Identities = 84/98 (85%) Strand = Plus / Plus Query: 695 attggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||| ||||||||||| ||||| |||||||| ||| | || |||||||| ||||| ||| Sbjct: 99098 attggggttgttcagagcgtatctcctactcttagtgttaggaggaagattgacaacgag 99157 Query: 755 tcaattccaaagcgtgacattgttgttgcagatgactc 792 | ||||||||||||||||| ||||| || |||||||| Sbjct: 99158 acgattccaaagcgtgacatcgttgtagcggatgactc 99195 Score = 61.9 bits (31), Expect = 8e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcg 237 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| Sbjct: 98280 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcg 98334
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 278 bits (140), Expect = 7e-71 Identities = 236/268 (88%) Strand = Plus / Plus Query: 422 ggcacccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcccgtgttt 481 |||||||| |||||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct: 7650 ggcacccagatccaggcaaccatgttcaacgaggctgccaagaagttctatccgatgttt 7709 Query: 482 gagcttgggaaggtctactacatctccaaagggtcgctgagaattgcaaacaagcagttc 541 ||||| |||||||| ||||||||||||||||| || || ||| | || |||||||||||| Sbjct: 7710 gagctggggaaggtgtactacatctccaaaggatctctcagagtcgccaacaagcagttc 7769 Query: 542 aagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagct 601 ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 7770 aagactgtccataatgactacgagatgaccctgaatgagaatgctgttgttgaggaagct 7829 Query: 602 gagggggaatctttcattccaccagtgcaatacaactttgttaagattgatatgctgggg 661 ||||| ||| |||| || |||| | || ||||||||||| ||||||||| ||| ||| Sbjct: 7830 gagggcgaaacttttatcccacagattcagtacaactttgtcaagattgatcagctaggg 7889 Query: 662 ccatatgttggtggcagggagttagtag 689 ||||||||||||||||||||| |||||| Sbjct: 7890 ccatatgttggtggcagggagctagtag 7917 Score = 155 bits (78), Expect = 7e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 1140 agcctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccagaccatgt 1199 ||||||| |||||||| ||| |||| | || |||| |||||||||||||| ||||||| Sbjct: 8820 agcctgtgttcttcagtctgaatgcctatattagccttatcaagcctgaccaaaccatgt 8879 Query: 1200 ggtaccgcgcttgcaccacctgcaacaagaaggtgaccgaggcactcggatcaggatact 1259 ||||||| ||||||| |||||||||||||||||||| |||||| | ||||||||||||| Sbjct: 8880 ggtaccgagcttgcaagacctgcaacaagaaggtgactgaggcaattggatcaggatact 8939 Query: 1260 ggtgtgaagggtgccagaagaa 1281 |||||||||||||||||||||| Sbjct: 8940 ggtgtgaagggtgccagaagaa 8961 Score = 141 bits (71), Expect = 1e-29 Identities = 146/171 (85%) Strand = Plus / Plus Query: 244 tgctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctgaa 303 ||||||||| || || || ||||||||||| || | || |||||| ||||||||||||| Sbjct: 7358 tgctgctcctgcggcgcggttggccatgacgagaagagttcatcctttgatctccctgaa 7417 Query: 304 cccctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggtc 363 |||||||||||| || ||| ||||||||||||| |||||||||||||||||||| ||| | Sbjct: 7418 cccctaccagggcaactggatcatcaaggtgcgtgtcacaagcaagggcaacctgaggac 7477 Query: 364 atacaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactga 414 |||| |||||| ||||| |||||| |||||||| || ||||||||||| Sbjct: 7478 gtacaagaatgctcgtggtgaaggctgcgtcttcaatgtggagctcactga 7528 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 996 ggtatgaatctgaaggcaagggtacttccttggcatcagttggtgctggaatgggtgcat 1055 ||||||| |||||||||||||||||||| |||||||| ||||| | | ||||| |||| Sbjct: 8571 ggtatgactctgaaggcaagggtacttcaatggcatcaattggttcagatatgggcgcat 8630 Query: 1056 ccagcgctggtggtttgagatcaatgtactctgacagagtttttctgtctcacatcacaa 1115 | || | |||||| |||||| |||||| ||| ||||||||||||||||||||||||| Sbjct: 8631 caagggttggtggcgcgagatccatgtacagtgatagagtttttctgtctcacatcacaa 8690 Query: 1116 gtgaccctaacttgggccaggataag 1141 ||||||| |||||||| ||||||||| Sbjct: 8691 gtgaccccaacttgggtcaggataag 8716 Score = 121 bits (61), Expect = 1e-23 Identities = 100/113 (88%) Strand = Plus / Plus Query: 1301 aggtacatcatggtgatcaaggtctctgatccaacaggtgaggcctggctgtcccttttc 1360 |||||||||||||| ||||||||||| || || || |||||||||||||| || || ||| Sbjct: 9070 aggtacatcatggtcatcaaggtctccgaccctactggtgaggcctggctttctctgttc 9129 Query: 1361 aatgaccaagcagagaggattgtcggctgcagtgcagataatcttgatcggat 1413 ||||| || |||||||||||||| ||||||||||||||| | ||||||||||| Sbjct: 9130 aatgatcaggcagagaggattgttggctgcagtgcagatgagcttgatcggat 9182 Score = 109 bits (55), Expect = 4e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 812 tctctttggaatgatcttgccaccactcttggtgaagagctgttggacatggttgactct 871 ||||||||||||||||||||||| ||| |||| | ||||| ||||||||||| |||||| Sbjct: 8223 tctctttggaatgatcttgccacaactactggtcaggagctcttggacatggtagactct 8282 Query: 872 gcacctatcgttgcaatcaagagcctgaaagtatctgactttcaagg 918 || |||||| |||| || |||||||| |||||||||||||| ||||| Sbjct: 8283 gcgcctatcattgcgataaagagcctaaaagtatctgacttccaagg 8329 Score = 105 bits (53), Expect = 6e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 1445 ctcaagctgaaggaagccacctgggttccccacctgttccgtgtcagcgttgcgcagaac 1504 ||||||||||||||||| || |||||||| ||||||||||| |||||||| | ||||| Sbjct: 9424 ctcaagctgaaggaagctacttgggttcctcacctgttccgcgtcagcgtaactcagaat 9483 Query: 1505 gagtacatgggcgagaagaggcagaggatcaccgtgaggag 1545 ||||||||| |||||||||||||||||||| |||||||| Sbjct: 9484 gagtacatgaatgagaagaggcagaggatcactgtgaggag 9524 Score = 83.8 bits (42), Expect = 2e-12 Identities = 84/98 (85%) Strand = Plus / Plus Query: 695 attggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||| ||||||||||| ||||| |||||||| ||| | || |||||||| ||||| ||| Sbjct: 8011 attggggttgttcagagcgtatctcctactcttagtgttaggaggaagattgacaacgag 8070 Query: 755 tcaattccaaagcgtgacattgttgttgcagatgactc 792 | ||||||||||||||||| ||||| || |||||||| Sbjct: 8071 acgattccaaagcgtgacatcgttgtagcggatgactc 8108 Score = 61.9 bits (31), Expect = 8e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 183 tgctgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcg 237 |||||||||||| ||| || |||||||||||||||||||| || | ||||||||| Sbjct: 7193 tgctgaagcccaagcaggaggtgaagtccgcgtcccagatcgtgaacgagcagcg 7247
>gb|AY109819.1| Zea mays CL3318_1 mRNA sequence Length = 846 Score = 256 bits (129), Expect = 3e-64 Identities = 249/289 (86%) Strand = Plus / Plus Query: 186 tgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaaatg 245 ||||||| | ||| || |||||||||||||||||||| || | |||||||||||||||| Sbjct: 539 tgaagcctaagcaagaggtgaagtccgcgtcccagatcgtgactgagcagcgtggaaatg 598 Query: 246 ctgctcccgctgctcgcttggccatgaccaggcgggtccatcctctgatctccctgaacc 305 ||||||| || | ||| | ||||||| ||| |||||||||| ||||| | ||||||| Sbjct: 599 ctgctcctgccacgcgcctttccatgacaaggagggtccatcccttgatcactctgaacc 658 Query: 306 cctaccaggggaattgggtcatcaaggtgcgggtcacaagcaagggcaacctcaggtcat 365 |||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||| | | Sbjct: 659 cctaccagggtaactgggtcattaaggtgcgggtcacgagcaaaggcaatctcagaacct 718 Query: 366 acaggaatgcccgtggagaaggccatgtcttcaacgtagagctcactgacgaggatggca 425 |||||||||| |||||||||||| |||||||||||||| || ||||| |||||||||| Sbjct: 719 acaggaatgctcgtggagaaggctgcgtcttcaacgtagaacttactgatgaggatggca 778 Query: 426 cccaaatccaggccaccatgttcaacgagcctgcaaagaagttctatcc 474 |||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct: 779 cccagatccaggccaccatgtttaacgaggctgcaaagaagttctatcc 827 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Plus Query: 61 acttcgcgtcggaggtccagtccggcagactccagaacctcggcctcgtccgcatcctca 120 |||| |||||||||||||| ||||||| || |||| |||| ||| ||||||||||| Sbjct: 290 actttgcgtcggaggtccactccggcaatctgaagaatttcggtctcatccgcatcctcg 349 Query: 121 actacacatgcaac 134 ||||||| |||||| Sbjct: 350 actacacttgcaac 363
>gb|AY105460.1| Zea mays PCO107885 mRNA sequence Length = 840 Score = 230 bits (116), Expect = 2e-56 Identities = 312/376 (82%), Gaps = 1/376 (0%) Strand = Plus / Minus Query: 1169 ataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaacaag 1228 |||||||||||||||||||| |||| ||||||||||| |||||||| ||||| |||||| Sbjct: 829 ataagccacatcaagcctgatcagaatatgtggtaccgtgcttgcacgacctgtaacaag 770 Query: 1229 aaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccagaagaactatgag 1288 |||||||| || || | || || ||||||||||| || |||||||| ||||| || Sbjct: 769 aaggtgactgaagcttttgggtctggatactggtgcgaggggtgccaaaagaattactct 710 Query: 1289 gagtgctcgttgaggtacatcatggtgatcaaggtctctgatccaacaggtgaggcctgg 1348 ||||||||| |||| |||||||||||||||||| |||| ||||| || || ||||| ||| Sbjct: 709 gagtgctcgctgagatacatcatggtgatcaagctctccgatcccactggcgaggcttgg 650 Query: 1349 ctgtcccttttcaatg-accaagcagagaggattgtcggctgcagtgcagataatcttga 1407 |||| | ||||||| | || ||||||| ||| | |||||||| || || | ||||| Sbjct: 649 gtgtctgtgttcaatgcagcatgcagagaagatcattggctgcagcgccgacgagcttga 590 Query: 1408 tcggatcagaaaagaggagggcgatgacatgttccagctcaagctgaaggaagccacctg 1467 ||||||||| ||||||||||| || |||| | | |||||||| |||||||||||||| Sbjct: 589 tcggatcaggaaagaggagggggacgacagctacgttctcaagctcaaggaagccacctg 530 Query: 1468 ggttccccacctgttccgtgtcagcgttgcgcagaacgagtacatgggcgagaagaggca 1527 |||||| |||||||||||||||||||| ||||| | || |||||| |||||||||||| Sbjct: 529 ggttcctcacctgttccgtgtcagcgtcacgcagcatgaatacatgaacgagaagaggca 470 Query: 1528 gaggatcaccgtgagg 1543 ||| |||||||||||| Sbjct: 469 gagaatcaccgtgagg 454
>gb|BT017328.1| Zea mays clone EL01N0320F08.c mRNA sequence Length = 821 Score = 212 bits (107), Expect = 4e-51 Identities = 317/387 (81%) Strand = Plus / Plus Query: 1157 ctgtgtgccaacataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcacc 1216 |||| ||||| ||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct: 2 ctgtatgccatcataagccacatcaagcctgatcagaatatgtggtaccgtgcttgcacg 61 Query: 1217 acctgcaacaagaaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccag 1276 | ||| |||||||||||||| || || | || || ||||||||||| || |||||||| Sbjct: 62 atctgtaacaagaaggtgactgaagcttttgggtctggatactggtgcgaggggtgccaa 121 Query: 1277 aagaactatgaggagtgctcgttgaggtacatcatggtgatcaaggtctctgatccaaca 1336 ||||| | ||||||||| |||| |||||||||||||| ||| |||| ||||| || Sbjct: 122 aagaatgactctgagtgctcgctgagatacatcatggtgataaagctctccgatcccact 181 Query: 1337 ggtgaggcctggctgtcccttttcaatgaccaagcagagaggattgtcggctgcagtgca 1396 |||||||| ||| ||||| | ||||| || || || |||| ||| | |||||||| || Sbjct: 182 ggtgaggcttgggtgtccgtgttcaacgagcatgcggagaagatcattggctgcagcgcc 241 Query: 1397 gataatcttgatcggatcagaaaagaggagggcgatgacatgttccagctcaagctgaag 1456 || | |||||||||||||| ||||||||||| || ||| | | | |||||||| ||| Sbjct: 242 gacgagcttgatcggatcaggaaagaggagggggacgacttctacgttctcaagctcaag 301 Query: 1457 gaagccacctgggttccccacctgttccgtgtcagcgttgcgcagaacgagtacatgggc 1516 ||||||||||||||||| ||||||||||| |||||||| | ||| | || |||||| | Sbjct: 302 gaagccacctgggttcctcacctgttccgcgtcagcgtcacacagcatgaatacatgaac 361 Query: 1517 gagaagaggcagaggatcaccgtgagg 1543 |||||||||||||| |||||||||||| Sbjct: 362 gagaagaggcagagaatcaccgtgagg 388
>gb|AY111108.1| Zea mays CL11267_1 mRNA sequence Length = 747 Score = 91.7 bits (46), Expect = 9e-15 Identities = 127/154 (82%) Strand = Plus / Minus Query: 1179 tcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaacaagaaggtgaccg 1238 ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| | Sbjct: 732 tcaagcctgaccagaacatgtggtaccgtgcttgcaagacctgcaacaagaaggtgactg 673 Query: 1239 aggcactcggatcaggatactggtgtgaagggtgccagaagaactatgaggagtgctcgt 1298 | | | ||||| ||||||||||| || || ||||| ||||| | ||| ||||| Sbjct: 672 aaacttttggatctggatactggtgcgagggatgccaaaagaatgactcggaatgctcac 613 Query: 1299 tgaggtacatcatggtgatcaaggtctctgatcc 1332 |||| ||||||||||| |||||||||| ||||| Sbjct: 612 tgagatacatcatggtcgtcaaggtctccgatcc 579 Score = 69.9 bits (35), Expect = 3e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 1448 aagctgaaggaagccacctgggttccccacctgttccgtgtcagcgt 1494 ||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct: 463 aagctcaaggaagccacctgggttcctcacctgttccgcgtcagcgt 417
>ref|NM_120884.1| Arabidopsis thaliana DNA binding / nucleic acid binding (AT5G08020) mRNA, complete cds Length = 1815 Score = 81.8 bits (41), Expect = 9e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 533 aagcagttcaagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgtt 592 ||||||||||||||||| ||||| || |||||||||||||| ||||||||| ||| ||| Sbjct: 721 aagcagttcaagacggttcagaacgattatgagatgaccctaaatgagaattctgaggtt 780 Query: 593 gaagaagct 601 ||||||||| Sbjct: 781 gaagaagct 789 Score = 75.8 bits (38), Expect = 5e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 1073 agatcaatgtactctgacagagtttttctgtctcacatcacaagtgaccctaacttgggc 1132 ||||| ||||| ||||||||||||||||| |||||||||||||| | || || ||| Sbjct: 1264 agatccatgtattctgacagagtttttctttctcacatcacaagcaatccctctttaggc 1323 Query: 1133 caggataagcctgttttcttcagcctgtgtgccaacataagccacatcaagcctgaccag 1192 |||| |||||||| ||||||||| | || |||||||| ||||||||| ||||| Sbjct: 1324 gaggagaagcctgtattcttcagcactagagcttacataagcttcatcaagccagaccaa 1383 Query: 1193 accatgtggtaccgcgcttgcaccacctgcaacaagaa 1230 || ||||||||||| ||||||| ||||| |||||||| Sbjct: 1384 acaatgtggtaccgtgcttgcaagacctgtaacaagaa 1421 Score = 50.1 bits (25), Expect = 0.031 Identities = 49/57 (85%) Strand = Plus / Plus Query: 698 ggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||||||||| ||||| || ||||| |||| || |||||||||| |||||||||| Sbjct: 889 ggtgttgttcaaagtgtttctcctaccatgagcattagaaggaagaacgacaatgag 945
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project) Length = 89988 Score = 81.8 bits (41), Expect = 9e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 533 aagcagttcaagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgtt 592 ||||||||||||||||| ||||| || |||||||||||||| ||||||||| ||| ||| Sbjct: 6 aagcagttcaagacggttcagaacgattatgagatgaccctaaatgagaattctgaggtt 65 Query: 593 gaagaagct 601 ||||||||| Sbjct: 66 gaagaagct 74 Score = 63.9 bits (32), Expect = 2e-06 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1073 agatcaatgtactctgacagagtttttctgtctcacatcacaag 1116 ||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct: 725 agatccatgtattctgacagagtttttctttctcacatcacaag 768 Score = 56.0 bits (28), Expect = 5e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| ||||||||| ||||| || ||||||||||| ||||||| ||||| |||| Sbjct: 897 acataagcttcatcaagccagaccaaacaatgtggtaccgtgcttgcaagacctgtaaca 956 Query: 1227 agaa 1230 |||| Sbjct: 957 agaa 960 Score = 50.1 bits (25), Expect = 0.031 Identities = 49/57 (85%) Strand = Plus / Plus Query: 698 ggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||||||||| ||||| || ||||| |||| || |||||||||| |||||||||| Sbjct: 267 ggtgttgttcaaagtgtttctcctaccatgagcattagaaggaagaacgacaatgag 323
>emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome 5, BAC clone F13G24 (ESSA project) Length = 88095 Score = 81.8 bits (41), Expect = 9e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 533 aagcagttcaagacggtccagaatgactatgagatgaccctgaatgagaatgctgttgtt 592 ||||||||||||||||| ||||| || |||||||||||||| ||||||||| ||| ||| Sbjct: 80248 aagcagttcaagacggttcagaacgattatgagatgaccctaaatgagaattctgaggtt 80307 Query: 593 gaagaagct 601 ||||||||| Sbjct: 80308 gaagaagct 80316 Score = 63.9 bits (32), Expect = 2e-06 Identities = 41/44 (93%) Strand = Plus / Plus Query: 1073 agatcaatgtactctgacagagtttttctgtctcacatcacaag 1116 ||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct: 80967 agatccatgtattctgacagagtttttctttctcacatcacaag 81010 Score = 56.0 bits (28), Expect = 5e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| ||||||||| ||||| || ||||||||||| ||||||| ||||| |||| Sbjct: 81139 acataagcttcatcaagccagaccaaacaatgtggtaccgtgcttgcaagacctgtaaca 81198 Query: 1227 agaa 1230 |||| Sbjct: 81199 agaa 81202 Score = 50.1 bits (25), Expect = 0.031 Identities = 49/57 (85%) Strand = Plus / Plus Query: 698 ggtgttgttcagagtgtatcacctactctgagtatcagaaggaagatcgacaatgag 754 ||||||||||| ||||| || ||||| |||| || |||||||||| |||||||||| Sbjct: 80509 ggtgttgttcaaagtgtttctcctaccatgagcattagaaggaagaacgacaatgag 80565
>gb|AY106875.1| Zea mays PCO107883 mRNA sequence Length = 651 Score = 61.9 bits (31), Expect = 8e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 186 tgaagcccaggcacgacgtgaagtccgcgtcccagattgttagcgagcagcgtggaaatg 245 ||||||||| ||| || |||||||| ||||||||||| || | ||||||||||||||| Sbjct: 525 tgaagcccaagcaggaggtgaagtctgcgtcccagatcgtgaatgagcagcgtggaaata 584 Query: 246 ctgctcc 252 ||||||| Sbjct: 585 ctgctcc 591 Score = 56.0 bits (28), Expect = 5e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 40 tcaaggcgatcctctcctcccacttcgcgtcggaggtccagtccggcagactccagaacc 99 |||||||||| || || || |||||| ||||||||||| || |||| || |||||| Sbjct: 270 tcaaggcgatgcttcccaccaacttcgggtcggaggtccgctctggcaacctgaagaacc 329 Query: 100 tcggcctcgtccgcatcctcaactacacatgcaacg 135 |||||||| |||||||| || ||||||| ||||||| Sbjct: 330 tcggcctcatccgcatcatcgactacacttgcaacg 365 Score = 44.1 bits (22), Expect = 1.9 Identities = 31/34 (91%) Strand = Plus / Plus Query: 279 gggtccatcctctgatctccctgaacccctacca 312 ||||||||||| ||||| | |||||||||||||| Sbjct: 618 gggtccatcctttgatcactctgaacccctacca 651
>ref|NM_125493.2| Arabidopsis thaliana DNA binding / nucleic acid binding (AT5G61000) mRNA, complete cds Length = 2074 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 530 aacaagcagttcaagacggtccagaatgactatgagatgaccctgaatga 579 |||||||||||||| || || |||||||| ||||||||||| |||||||| Sbjct: 870 aacaagcagttcaaaacagttcagaatgattatgagatgacactgaatga 919 Score = 46.1 bits (23), Expect = 0.49 Identities = 89/111 (80%) Strand = Plus / Plus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| |||||| || ||||| || |||||||||| ||||| | || || |||| Sbjct: 1510 acataagcttcatcaaaccagaccaaacaatgtggtaccaagcttgtaagacttgtaaca 1569 Query: 1227 agaaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccaga 1277 |||| ||||| || ||||| | || || |||||||||||||| ||||||| Sbjct: 1570 agaaagtgacagaagcacttgactctggttactggtgtgaaggatgccaga 1620
>gb|BT003950.1| Arabidopsis thaliana clone RAFL15-25-L07 (R20760) putative RNA helicase (At5g61000) mRNA, complete cds Length = 2094 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 530 aacaagcagttcaagacggtccagaatgactatgagatgaccctgaatga 579 |||||||||||||| || || |||||||| ||||||||||| |||||||| Sbjct: 870 aacaagcagttcaaaacagttcagaatgattatgagatgacactgaatga 919 Score = 46.1 bits (23), Expect = 0.49 Identities = 89/111 (80%) Strand = Plus / Plus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| |||||| || ||||| || |||||||||| ||||| | || || |||| Sbjct: 1510 acataagcttcatcaaaccagaccaaacaatgtggtaccaagcttgtaagacttgtaaca 1569 Query: 1227 agaaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccaga 1277 |||| ||||| || ||||| | || || |||||||||||||| ||||||| Sbjct: 1570 agaaagtgacagaagcacttgactctggttactggtgtgaaggatgccaga 1620
>dbj|AB006696.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAF19 Length = 78379 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 530 aacaagcagttcaagacggtccagaatgactatgagatgaccctgaatga 579 |||||||||||||| || || |||||||| ||||||||||| |||||||| Sbjct: 253 aacaagcagttcaaaacagttcagaatgattatgagatgacactgaatga 204
>emb|BX829495.1|CNS0A17Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB17ZC10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2002 Score = 60.0 bits (30), Expect = 3e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 530 aacaagcagttcaagacggtccagaatgactatgagatgaccctgaatga 579 |||||||||||||| || || |||||||| ||||||||||| |||||||| Sbjct: 837 aacaagcagttcaaaacagttcagaatgattatgagatgacactgaatga 886
>gb|AF399823.1|AF399823 Leishmania infantum replication protein A subunit 1 mRNA, complete cds Length = 2594 Score = 50.1 bits (25), Expect = 0.031 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1217 acctgcaacaagaaggtgaccgagg 1241 ||||||||||||||||||||||||| Sbjct: 1518 acctgcaacaagaaggtgaccgagg 1542
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 46.1 bits (23), Expect = 0.49 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1218 cctgcaacaagaaggtgaccgag 1240 ||||||||||||||||||||||| Sbjct: 3322746 cctgcaacaagaaggtgaccgag 3322724
>dbj|AK220794.1| Arabidopsis thaliana mRNA for RNA helicase, partial cds, clone: RAFL22-28-F10 Length = 877 Score = 46.1 bits (23), Expect = 0.49 Identities = 89/111 (80%) Strand = Plus / Plus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| |||||| || ||||| || |||||||||| ||||| | || || |||| Sbjct: 304 acataagcttcatcaaaccagaccaaacaatgtggtaccaagcttgtaagacttgtaaca 363 Query: 1227 agaaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccaga 1277 |||| ||||| || ||||| | || || |||||||||||||| ||||||| Sbjct: 364 agaaagtgacagaagcacttgactctggttactggtgtgaaggatgccaga 414
>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3 Length = 61634 Score = 46.1 bits (23), Expect = 0.49 Identities = 89/111 (80%) Strand = Plus / Minus Query: 1167 acataagccacatcaagcctgaccagaccatgtggtaccgcgcttgcaccacctgcaaca 1226 |||||||| |||||| || ||||| || |||||||||| ||||| | || || |||| Sbjct: 60901 acataagcttcatcaaaccagaccaaacaatgtggtaccaagcttgtaagacttgtaaca 60842 Query: 1227 agaaggtgaccgaggcactcggatcaggatactggtgtgaagggtgccaga 1277 |||| ||||| || ||||| | || || |||||||||||||| ||||||| Sbjct: 60841 agaaagtgacagaagcacttgactctggttactggtgtgaaggatgccaga 60791
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.49 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1218 cctgcaacaagaaggtgaccgag 1240 ||||||||||||||||||||||| Sbjct: 1338947 cctgcaacaagaaggtgaccgag 1338969
>emb|CU041381.1| Platypus DNA sequence from clone CLM1-572A11, complete sequence Length = 175828 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1680 tgggagaagagaagatgcaagataat 1705 ||||||||||| |||||||||||||| Sbjct: 12731 tgggagaagaggagatgcaagataat 12706
>emb|X77079.1|ESCU3 E.schoeniclus DNA repeat region (Escu3 locus) Length = 360 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1081 gtactctgacagagtttttctg 1102 |||||||||||||||||||||| Sbjct: 1 gtactctgacagagtttttctg 22
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 7.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 acctcggcctcgtccgcatcctcaa 121 |||||| |||||||||||||||||| Sbjct: 8784310 acctcgtcctcgtccgcatcctcaa 8784334
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 7.6 Identities = 32/35 (91%), Gaps = 3/35 (8%) Strand = Plus / Plus Query: 1574 gcgaggtaccagc---ttgaggagatcgccaggct 1605 ||||||||||||| ||||||||||||||||||| Sbjct: 7175809 gcgaggtaccagcgccttgaggagatcgccaggct 7175843
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 ggtcatcaaggtgcgggtcac 342 ||||||||||||||||||||| Sbjct: 1261310 ggtcatcaaggtgcgggtcac 1261330
>gb|AC091499.2| Drosophila melanogaster clone BACR33L22, complete sequence Length = 182105 Score = 42.1 bits (21), Expect = 7.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 acctcggcctcgtccgcatcctcaa 121 |||||| |||||||||||||||||| Sbjct: 160064 acctcgtcctcgtccgcatcctcaa 160088
>gb|AC141900.3| Mus musculus BAC clone RP23-47I1 from chromosome 12, complete sequence Length = 145868 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1341 aggcctggctgtcccttttca 1361 ||||||||||||||||||||| Sbjct: 135079 aggcctggctgtcccttttca 135099
>gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome 12, complete sequence Length = 170371 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1341 aggcctggctgtcccttttca 1361 ||||||||||||||||||||| Sbjct: 13961 aggcctggctgtcccttttca 13981
>emb|CR954247.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome II, complete sequence Length = 635328 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 gctgagaattgcaaacaagca 537 ||||||||||||||||||||| Sbjct: 210631 gctgagaattgcaaacaagca 210651
>emb|CR381646.8| Zebrafish DNA sequence from clone DKEY-241L7 in linkage group 20, complete sequence Length = 183151 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1137 ataagcctgttttcttcagcc 1157 ||||||||||||||||||||| Sbjct: 83887 ataagcctgttttcttcagcc 83907
>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone BACR30D19, complete sequence Length = 163052 Score = 42.1 bits (21), Expect = 7.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 acctcggcctcgtccgcatcctcaa 121 |||||| |||||||||||||||||| Sbjct: 11827 acctcgtcctcgtccgcatcctcaa 11851
>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete sequence Length = 245536 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 797 aagaccgtcacagtttctctt 817 ||||||||||||||||||||| Sbjct: 151420 aagaccgtcacagtttctctt 151400
>gb|AC004253.2| Homo sapiens chromosome 17, clone CTC-542B22, complete sequence Length = 130724 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tgatcttgccaccactcttgg 843 ||||||||||||||||||||| Sbjct: 5368 tgatcttgccaccactcttgg 5388
>gb|AC091755.3| Sus scrofa clone RP44-123F10, complete sequence Length = 207865 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 cagactccagaacctcggcct 106 ||||||||||||||||||||| Sbjct: 139233 cagactccagaacctcggcct 139253
>gb|AC129917.6| Homo sapiens chromosome 17, clone RP11-279B10, complete sequence Length = 118759 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 823 tgatcttgccaccactcttgg 843 ||||||||||||||||||||| Sbjct: 10052 tgatcttgccaccactcttgg 10032
>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17, complete sequence Length = 156881 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 769 tgacattgttgttgcagatga 789 ||||||||||||||||||||| Sbjct: 73203 tgacattgttgttgcagatga 73183
>emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 in linkage group 17, complete sequence Length = 154493 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgacattgttgttgcagatga 789 ||||||||||||||||||||| Sbjct: 38233 tgacattgttgttgcagatga 38253
>gb|AF027686.1|AF027686 Onobrychis viciifolia glycine-rich protein mRNA, complete cds Length = 778 Score = 42.1 bits (21), Expect = 7.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1033 agttggtgctggaatgggtgc 1053 ||||||||||||||||||||| Sbjct: 253 agttggtgctggaatgggtgc 273 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 345,701,245 Number of extensions: 18232663 Number of successful extensions: 86410 Number of sequences better than 10.0: 44 Number of HSP's gapped: 86378 Number of HSP's successfully gapped: 90 Length of query: 1993 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1970 Effective length of database: 18,503,978,556 Effective search space: 36452837755320 Effective search space used: 36452837755320 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
