ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf54k22 |
|---|---|
| Clone Library Name | barley_pub |
>P40602:APG_ARATH Anter-specific proline-rich protein APG precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 534 Score = 210 bits (534), Expect = 9e-54 Identities = 119/343 (34%), Positives = 185/343 (53%), Gaps = 13/343 (3%) Frame = +3 Query: 75 PAISSSKRTQPRFPAIFYFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGR 254 PA S K PA+F+FGDS+FDTGNNN++ T +N+ PYG DF TGRFSNG Sbjct: 190 PAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGM 249 Query: 255 LVPDLLNERLQLKEFSPPFLDAGLSDKDIMTGVNFASAGSGFDDRTSRVANTMPLSVQVD 434 + D L + + +KE P +LD + D++TGV+FAS G+G++ TS AN +P+ Q+ Sbjct: 250 VASDYLAKYMGVKEIVPAYLDPKIQPNDLLTGVSFASGGAGYNPTTSEAANAIPMLDQLT 309 Query: 435 LFRD--EYLPRL-------RSISGDKEATRIIASSLMFINSGTND-FTRYYRSSKRRV-- 578 F+D E + RL ++G ++ ++I+ + + G+ND Y+ S +R+ Sbjct: 310 YFQDYIEKVNRLVRQEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITYFGSGAQRLKN 369 Query: 579 DIGEYQDSVLQLVHAHVKELYKVGGRQFILAGLPPFGCIPFQITLSGDPERGCVDEQNRE 758 DI Y + + V +LY G R+ + G PP GC+P Q ++ C +E N Sbjct: 370 DIDSYTTIIADSAASFVLQLYGYGARRIGVIGTPPLGCVPSQRL---KKKKICNEELNYA 426 Query: 759 AQVYNSKLQKLIPALQGSLRGSRIVYLNAYEAFTQIIDNSNKYGFXXXXXXXXXXXXXXV 938 +Q++NSKL ++ L +L S VY++ Y +Q+++ YGF Sbjct: 427 SQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSA 486 Query: 939 GILCNRFT-PICRNVSSYIFYDAVHPTERVYRIATDYIVKNVI 1064 G LC + T IC N SSY+F+D VHPT+R Y+ ++K + Sbjct: 487 GALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTINKVLIKEYL 529
>P40603:APG_BRANA Anther-specific proline-rich protein APG - Brassica napus (Rape)| Length = 449 Score = 196 bits (497), Expect = 2e-49 Identities = 114/340 (33%), Positives = 178/340 (52%), Gaps = 10/340 (2%) Frame = +3 Query: 75 PAISSSKRTQPRFPAIFYFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGR 254 PA S K PA+F+FGDSIFDTGNNN++ T N+ PYG DFP TGRFSNGR Sbjct: 111 PAPSPPKPQNKTIPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGR 170 Query: 255 LVPDLLNERLQLKEFSPPFLDA------GLSDKDIMTGVNFASAGSGFDDRTSRVANTMP 416 + D +++ L +KE P ++D L D++TGV+FAS G+G+ +TS Sbjct: 171 VASDYISKYLGVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSESWKVTT 230 Query: 417 LSVQVDLFRDEYLPRLRSISGDKEATRIIASSLMFINSGTNDFTRYY---RSSKRRVDIG 587 + Q+ F+D Y R++ + G K+ +I++ + +G+ND Y + + D+ Sbjct: 231 MLDQLTYFQD-YKKRMKKLVGKKKTKKIVSKGAAIVVAGSNDLIYTYFGNGAQHLKNDVD 289 Query: 588 EYQDSVLQLVHAHVKELYKVGGRQFILAGLPPFGCIPFQITLSGDPERGCVDEQNREAQV 767 + + + V +LY G R+ + G PP GC P Q ++ C ++ N AQ+ Sbjct: 290 SFTTMMADSAASFVLQLYGYGARRIGVIGTPPIGCTPSQRV---KKKKICNEDLNYAAQL 346 Query: 768 YNSKLQKLIPALQGSLRGSRIVYLNAYEAFTQIIDNSNKYGFXXXXXXXXXXXXXXVGIL 947 +NSKL ++ L +L S IVY + Y F++++++ YGF G+ Sbjct: 347 FNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVF 406 Query: 948 C-NRFTPICRNVSSYIFYDAVHPTERVYRIATDYIVKNVI 1064 C R N SSY+F+D +HP++R Y I+ +VK I Sbjct: 407 CKERTLKNMSNASSYLFWDGLHPSQRAYEISNRKLVKKYI 446
>Q7Y1X1:EST_HEVBR Esterase precursor - Hevea brasiliensis (Para rubber tree)| Length = 391 Score = 100 bits (248), Expect = 1e-20 Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 21/282 (7%) Frame = +3 Query: 111 FPAIFYFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRLVPDLLNERLQL 290 FPAIF FGDS DTG +PPYG F R TGR+S+GRL+ D + E L Sbjct: 32 FPAIFNFGDSNSDTGGK---AAAFYPLNPPYGETF-FHRSTGRYSDGRLIIDFIAESFNL 87 Query: 291 KEFSPPFLDAGLSDKDIMTGVNFASAGSGFDDRTSRVA-----NTMPLSVQVDLFRDEYL 455 SP G + K G +FA+AGS T+ + + L VQ FR +++ Sbjct: 88 PYLSPYLSSLGSNFKH---GADFATAGSTIKLPTTIIPAHGGFSPFYLDVQYSQFR-QFI 143 Query: 456 PRLRSISGDKEATRIIA----------SSLMFINSGTNDFTRYYRSSKRRVDIGEYQDSV 605 PR + I +E I A +L + G ND T + + + + E +V Sbjct: 144 PRSQFI---RETGGIFAELVPEEYYFEKALYTFDIGQNDLTEGFLN----LTVEEVNATV 196 Query: 606 LQLVH---AHVKELYKVGGRQFILAGLPPFGCIPFQITLSGDPER---GCVDEQNREAQV 767 LV+ A+VK++Y +G R F + P GC+ F +T E+ GC N AQ Sbjct: 197 PDLVNSFSANVKKIYDLGARTFWIHNTGPIGCLSFILTYFPWAEKDSAGCAKAYNEVAQH 256 Query: 768 YNSKLQKLIPALQGSLRGSRIVYLNAYEAFTQIIDNSNKYGF 893 +N KL++++ L+ L + V+++ Y + K+GF Sbjct: 257 FNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGF 298
>Q9FXE5:FUCO3_ARATH Alpha-L-fucosidase 3 precursor - Arabidopsis thaliana (Mouse-ear| cress) Length = 372 Score = 98.6 bits (244), Expect = 4e-20 Identities = 89/287 (31%), Positives = 133/287 (46%), Gaps = 18/287 (6%) Frame = +3 Query: 87 SSKRTQPRFPAIFYFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRLVPD 266 S+ Q FPAIF FGDS DTG + G A PP+G F GS P GR+ +GRLV D Sbjct: 20 STHAHQCHFPAIFNFGDSNSDTGGLS--AAFGQAG-PPHGSSFFGS-PAGRYCDGRLVID 75 Query: 267 LLNERLQLKEFSPPFLDAGLSD--KDIMTGVNFASAGSGFD--DRTSRVANTMPLSVQVD 434 + E L L P+L A L + G NFA+AGS + T R + P S+ V Sbjct: 76 FIAESLGL-----PYLSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQ 130 Query: 435 LFR----DEYLPRLRSISGDKEA----TRIIASSLMFINSGTNDFTRYYRSSKRRVDIG- 587 + +RS G + + + +L + G ND T Y ++K + Sbjct: 131 FVQFYNFHNRSQTVRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGYFANKTVEQVET 190 Query: 588 EYQDSVLQLVHAHVKELYKVGGRQFILAGLPPFGCIPFQI-----TLSGDPERGCVDEQN 752 E + + Q ++A +K +Y GGR F + P GC+ + I S GCV N Sbjct: 191 EVPEIISQFMNA-IKNIYGQGGRYFWIHNTGPIGCLAYVIERFPNKASDFDSHGCVSPLN 249 Query: 753 REAQVYNSKLQKLIPALQGSLRGSRIVYLNAYEAFTQIIDNSNKYGF 893 AQ +N L++ + L+ SL + I Y++ Y ++ ++ +GF Sbjct: 250 HLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGF 296
>P14616:INSRR_HUMAN Insulin receptor-related protein precursor - Homo sapiens (Human)| Length = 1297 Score = 34.7 bits (78), Expect = 0.71 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Frame = -2 Query: 887 VFIAVVNDLRKSFVCIQVYNSASSE*AL*CWNQLLKFGVVDLGLPVLLIHATPLRVSTQC 708 V + VN+L CI+ AS A C + + GVV G P L+I + + T+ Sbjct: 1010 VALKTVNELASPRECIEFLKEASVMKAFKCHHVVRLLGVVSQGQPTLVI----MELMTRG 1065 Query: 707 DLKGYAAKWRKTCQDE--LPAPDFIQLLDM 624 DLK + R ++ LP P +++ M Sbjct: 1066 DLKSHLRSLRPEAENNPGLPQPALGEMIQM 1095
>P10480:GCAT_AERHY Phosphatidylcholine-sterol acyltransferase precursor - Aeromonas| hydrophila Length = 335 Score = 32.0 bits (71), Expect = 4.6 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +3 Query: 99 TQPRFPAIFYFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRL-VPDLLN 275 ++P F I FGDS+ DTG L + PPY GRFSNG + + L N Sbjct: 21 SRPAFSRIVMFGDSLSDTGKMYSKMRGYLPSSPPYYE--------GRFSNGPVWLEQLTN 72 Query: 276 E 278 E Sbjct: 73 E 73
>P05962:POL_HV2NZ Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| NIH-Z subtype A) (HIV-2) Length = 1461 Score = 31.6 bits (70), Expect = 6.0 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 141 IFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRLVPDLLNERLQLKE 296 + +TG +P PP G++FP + G +++ L P LN ++L E Sbjct: 109 VAETGTAEKMPNTSRPTAPPSGKNFPVQQVAGNYTHIPLSPGTLNAWVKLVE 160
>P05891:GAG_HV2NZ Gag polyprotein - Human immunodeficiency virus type 2 (isolate| NIH-Z subtype A) (HIV-2) Length = 519 Score = 31.6 bits (70), Expect = 6.0 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 141 IFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRLVPDLLNERLQLKE 296 + +TG +P PP G++FP + G +++ L P LN ++L E Sbjct: 109 VAETGTAEKMPNTSRPTAPPSGKNFPVQQVAGNYTHIPLSPGTLNAWVKLVE 160
>Q2JIM7:RL3_SYNJB 50S ribosomal protein L3 - Synechococcus sp. (strain| JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) Length = 214 Score = 31.2 bits (69), Expect = 7.9 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = +3 Query: 126 YFGDSIFDTGNNNHIPTLGLANHPPYGRDFPGSRPTGRFSNGRLVPDLLNERLQLKEFSP 305 +FG G+ NH + GR FPG R GR GR+ +LQL + P Sbjct: 128 HFGRGPMSHGSKNHRRPGSIGAGTTPGRVFPGMRMAGRLGGGRVT----TRKLQLVQVDP 183 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 190,240,387 Number of extensions: 4532773 Number of successful extensions: 13563 Number of sequences better than 10.0: 9 Number of HSP's gapped: 13534 Number of HSP's successfully gapped: 9 Length of query: 366 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 251 Effective length of database: 69,142,514 Effective search space: 17354771014 Effective search space used: 17354771014 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
