ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf58c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234564.1|HVU234564 Hordeum vulgare genomic DNA fragment; c... 190 8e-45
2emb|AJ234563.1|HVU234563 Hordeum vulgare genomic DNA fragment; c... 143 2e-30
3emb|CT829435.1| Oryza sativa (indica cultivar-group) cDNA clone:... 96 4e-16
4ref|NM_001063188.1| Oryza sativa (japonica cultivar-group) Os06g... 96 4e-16
5gb|AY225189.1| Oryza sativa (indica cultivar-group) zinc finger ... 96 4e-16
6gb|AY207044.1| Oryza sativa (indica cultivar-group) zinc-finger ... 96 4e-16
7dbj|AK104425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 4e-16
8dbj|AK068302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 4e-16
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-09
10dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 72 5e-09
11dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome 46 0.31
12gb|DQ333888.1| Hirudo medicinalis putative elongation factor 1 a... 46 0.31
13gb|AY112568.1| Zea mays CL32837_1 mRNA sequence 46 0.31
14ref|XM_001221416.1| Chaetomium globosum CBS 148.51 hypothetical ... 44 1.2
15gb|BT026773.1| Gasterosteus aculeatus clone CFW40-B09 mRNA sequence 44 1.2
16gb|AC122853.3| Mus musculus BAC clone RP23-175F18 from 7, comple... 44 1.2
17gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's H... 44 1.2
18gb|AC094085.3| Homo sapiens chromosome 5 clone CTD-2110K23, comp... 44 1.2
19gb|AC151052.4| Mus musculus BAC clone RP24-72K12 from chromosome... 44 1.2
20emb|AL929140.16| Mouse DNA sequence from clone RP23-188A4 on chr... 44 1.2
21gb|AY940097.1| Homo sapiens X-ray repair complementing defective... 44 1.2
22emb|X03856.1|RNMLVI2L Rat DNA left nonLINE/Mlvi-2 LINE junction ... 44 1.2
23emb|X03855.1|RNMLVI2E Rat DNA with empty target site for Mlvi-2... 44 1.2
24emb|CR293526.28| Mouse DNA sequence from clone RP23-9K14 on chro... 44 1.2
25ref|XM_972125.1| Tetrahymena thermophila SB210 hypothetical prot... 42 4.8
26emb|CR855213.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 4.8
27ref|XM_001230139.1| Chaetomium globosum CBS 148.51 hypothetical ... 42 4.8
28ref|NM_001055658.1| Oryza sativa (japonica cultivar-group) Os03g... 42 4.8
29gb|CP000431.1| Rhodococcus sp. RHA1, complete genome 42 4.8
30ref|XM_001078350.1| PREDICTED: Rattus norvegicus similar to KIAA... 42 4.8
31gb|AC102140.15| Mus musculus chromosome 3, clone RP23-286J21, co... 42 4.8
32gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 42 4.8
33gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cance... 42 4.8
34gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, comple... 42 4.8
35gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's ... 42 4.8
36gb|AC011597.27| Homo sapiens 3 BAC RP11-85F14 (Roswell Park Canc... 42 4.8
37emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 4.8
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
41gb|AY061567.1| Drosophila melanogaster SD01079 full length cDNA 42 4.8
42dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
43dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
44emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 42 4.8
45gb|AY900631.1| Drosophila buzzatii clone BAC 5H14, complete sequ... 42 4.8
46dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
47dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
48emb|AL928997.8| Zebrafish DNA sequence from clone CH211-125O15 i... 42 4.8
49dbj|AK063978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 4.8
50emb|BX649599.7| Zebrafish DNA sequence from clone CH211-224B1 in... 42 4.8
51gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, com... 42 4.8 
>emb|AJ234564.1|HVU234564 Hordeum vulgare genomic DNA fragment; clone MWG0807.rev
          Length = 526
 Score =  190 bits (96), Expect = 8e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1145 tttttagtttaagttcactgtcccaaagggtgtctcccccactgtaatttttggcatgtg 1204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  tttttagtttaagttcactgtcccaaagggtgtctcccccactgtaatttttggcatgtg 401

                                                
Query: 1205 caagtgtcctgatatatatacatcaactttttcctg 1240
            ||||||||||||||||||||||||||||||||||||
Sbjct: 400  caagtgtcctgatatatatacatcaactttttcctg 365
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>emb|AJ234563.1|HVU234563 Hordeum vulgare genomic DNA fragment; clone MWG0807.uni
          Length = 567

 Score =  143 bits (72), Expect = 2e-30
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                       
Query: 536 aggctgctaggcaggatgatgatgacaacgacatcgacgacgatgttgatccggacaaca 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggctgctaggcaggatgatgatgacaacgacatcgacgacgatgttgatccggacaaca 361

                       
Query: 596 tgacatatgagg 607
           ||||||||||||
Sbjct: 362 tgacatatgagg 373



 Score =  133 bits (67), Expect = 2e-27
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                       
Query: 472 gatataagctgtgtgccttccccatccgacaccgatgacgatgatgatcgcggcgacgaa 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gatataagctgtgtgccttccccatccgacaccgatgacgatgatgatcgcggcgacgaa 198

                  
Query: 532 gaggagg 538
           |||||||
Sbjct: 199 gaggagg 205



 Score =  103 bits (52), Expect = 2e-18
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                               
Query: 421 gatatggaggatctggatgtggacacgcctcccaacgacgatgaggaagacg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatatggaggatctggatgtggacacgcctcccaacgacgatgaggaagacg 52
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>emb|CT829435.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107A15, full
           insert sequence
          Length = 1282

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 839 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 898

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 899 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 958



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                       
Query: 832  tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 1080 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 1138
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>ref|NM_001063188.1| Oryza sativa (japonica cultivar-group) Os06g0125800 (Os06g0125800)
           mRNA, complete cds
          Length = 1068

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 611 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 670

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 671 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 730



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                      
Query: 832 tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 852 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 910
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>gb|AY225189.1| Oryza sativa (indica cultivar-group) zinc finger protein mRNA,
           complete cds
          Length = 855

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 518 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 577

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 578 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 637



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                      
Query: 832 tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 759 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 817
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>gb|AY207044.1| Oryza sativa (indica cultivar-group) zinc-finger protein mRNA,
           complete cds
          Length = 855

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 518 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 577

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 578 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 637



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                      
Query: 832 tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 759 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 817
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>dbj|AK104425.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F10, full
           insert sequence
          Length = 1068

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 611 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 670

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 671 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 730



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                      
Query: 832 tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 852 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 910
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>dbj|AK068302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013144A04, full
           insert sequence
          Length = 1058

 Score = 95.6 bits (48), Expect = 4e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                       
Query: 582 tgatccggacaacatgacatatgaggaaaggcaggaactagtggaatcagtgggaaatga 641
           |||||| |||||||||||||| ||| ||||||||| ||| |||||||| || ||||||||
Sbjct: 615 tgatccagacaacatgacatacgagcaaaggcaggcacttgtggaatctgtaggaaatga 674

                                                                       
Query: 642 gagcagaggtttgtctgatgagctcatgtcatatttggtgccatggaagtacaagtcagg 701
           || ||||||||| ||||||  ||| || || || |||| | ||||||||||||| |||||
Sbjct: 675 gaacagaggtttatctgatctgcttatctcctacttggagacatggaagtacaaatcagg 734



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                      
Query: 832 tggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgtttggaccctccta 890
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 856 tggctcaagattgacaaggcctgcccagtttgcaaatatgaagtgtttggaccttccta 914
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                       
Query: 851     cctgcccagtttgcaaatatgaagtgtttggaccctccta 890
               |||||||||||||||||||||||||||||||||| |||||
Sbjct: 1384786 cctgcccagtttgcaaatatgaagtgtttggaccttccta 1384825



 Score = 67.9 bits (34), Expect = 8e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                           
Query: 608     aaaggcaggaactagtggaatcagtgggaaatgagagcagaggtttgtctgatgagctca 667
               ||||||||| ||| |||||||| || |||||||||| ||||||||| ||||||  ||| |
Sbjct: 1384189 aaaggcaggcacttgtggaatctgtaggaaatgagaacagaggtttatctgatctgctta 1384248

                                                 
Query: 668     tgtcatatttggtgccatggaagtacaagtcagg 701
               | || || |||| | ||||||||||||| |||||
Sbjct: 1384249 tctcctacttggagacatggaagtacaaatcagg 1384282
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0425F02
          Length = 176979

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 851   cctgcccagtttgcaaatatgaagtgtttggaccctccta 890
             |||||||||||||||||||||||||||||||||| |||||
Sbjct: 93325 cctgcccagtttgcaaatatgaagtgtttggaccttccta 93364



 Score = 67.9 bits (34), Expect = 8e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                         
Query: 608   aaaggcaggaactagtggaatcagtgggaaatgagagcagaggtttgtctgatgagctca 667
             ||||||||| ||| |||||||| || |||||||||| ||||||||| ||||||  ||| |
Sbjct: 92728 aaaggcaggcacttgtggaatctgtaggaaatgagaacagaggtttatctgatctgctta 92787

                                               
Query: 668   tgtcatatttggtgccatggaagtacaagtcagg 701
             | || || |||| | ||||||||||||| |||||
Sbjct: 92788 tctcctacttggagacatggaagtacaaatcagg 92821
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>dbj|AP008979.1| Xanthomonas oryzae phage OP1 DNA, complete genome
          Length = 43785

 Score = 46.1 bits (23), Expect = 0.31
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 337   agcagcagaggcacagcagcaga 359
             |||||||||||||||||||||||
Sbjct: 36003 agcagcagaggcacagcagcaga 35981
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>gb|DQ333888.1| Hirudo medicinalis putative elongation factor 1 alpha (EF-1alpha)
           gene, complete cds
          Length = 6463

 Score = 46.1 bits (23), Expect = 0.31
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 550 gatgatgatgacaacgacatcgacgacgatg 580
           ||||||||||||||||||  |||||||||||
Sbjct: 616 gatgatgatgacaacgacgacgacgacgatg 646
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>gb|AY112568.1| Zea mays CL32837_1 mRNA sequence
          Length = 709

 Score = 46.1 bits (23), Expect = 0.31
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 818 cttgcatcaccaagtggctcaagatcgacaagacctgcccagtttgcaaatatgaagtgt 877
           ||||| ||||||| ||||||| | || ||||| | ||||| || |||||||||||| |||
Sbjct: 325 cttgcgtcaccaaatggctcagggtcaacaagccatgccctgtatgcaaatatgaactgt 266

                  
Query: 878 ttggacc 884
           | |||||
Sbjct: 265 tcggacc 259
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>ref|XM_001221416.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_05322)
           mRNA, complete cds
          Length = 1242

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 559 gacaacgacatcgacgacgatg 580
           ||||||||||||||||||||||
Sbjct: 163 gacaacgacatcgacgacgatg 184
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>gb|BT026773.1| Gasterosteus aculeatus clone CFW40-B09 mRNA sequence
          Length = 2369

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 72   gggagaagagaagagcaggaaa 93
            ||||||||||||||||||||||
Sbjct: 1451 gggagaagagaagagcaggaaa 1472
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>gb|AC122853.3| Mus musculus BAC clone RP23-175F18 from 7, complete sequence
          Length = 199264

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1198   gcatgtgcaagtgtcctgatatatat 1223
              ||||||||||||||||||||| ||||
Sbjct: 187409 gcatgtgcaagtgtcctgatacatat 187434
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>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 221396

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 744   cactgtgtgtctgtcagctttc 765
             ||||||||||||||||||||||
Sbjct: 29344 cactgtgtgtctgtcagctttc 29365
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>gb|AC094085.3| Homo sapiens chromosome 5 clone CTD-2110K23, complete sequence
          Length = 85977

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 966   attcagtacaaaagaaagaaaa 987
             ||||||||||||||||||||||
Sbjct: 61153 attcagtacaaaagaaagaaaa 61132
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>gb|AC151052.4| Mus musculus BAC clone RP24-72K12 from chromosome 7, complete sequence
          Length = 216989

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 1198  gcatgtgcaagtgtcctgatatatat 1223
             ||||||||||||||||||||| ||||
Sbjct: 57154 gcatgtgcaagtgtcctgatacatat 57129
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>emb|AL929140.16| Mouse DNA sequence from clone RP23-188A4 on chromosome 2, complete
             sequence
          Length = 120665

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 553   gatgatgacaacgacatcgacgacga 578
             |||||||||||||||| |||||||||
Sbjct: 63447 gatgatgacaacgacaacgacgacga 63472
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>gb|AY940097.1| Homo sapiens X-ray repair complementing defective repair in Chinese
              hamster cells 4 (XRCC4) gene, complete cds
          Length = 279061

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 966    attcagtacaaaagaaagaaaa 987
              ||||||||||||||||||||||
Sbjct: 106447 attcagtacaaaagaaagaaaa 106426
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>emb|X03856.1|RNMLVI2L Rat DNA left nonLINE/Mlvi-2 LINE junction (Mlvi = Moloney leukemia
           virus integration; LINE = long interspersed repeated
           DNA)
          Length = 213

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 712 ttttcaaagaagacaaacaatgatga 737
           |||| |||||||||||||||||||||
Sbjct: 140 ttttaaaagaagacaaacaatgatga 115
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>emb|X03855.1|RNMLVI2E Rat DNA with empty target site  for Mlvi-2 integration (Mlvi =
           Moloney leukemia virus integration)
          Length = 416

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 712 ttttcaaagaagacaaacaatgatga 737
           |||| |||||||||||||||||||||
Sbjct: 140 ttttaaaagaagacaaacaatgatga 115
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>emb|CR293526.28| Mouse DNA sequence from clone RP23-9K14 on chromosome X, complete
            sequence
          Length = 211297

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  agcagaggcacagcagcagaaa 361
            ||||||||||||||||||||||
Sbjct: 9045 agcagaggcacagcagcagaaa 9066



 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 340    agcagaggcacagcagcagaaa 361
              ||||||||||||||||||||||
Sbjct: 100473 agcagaggcacagcagcagaaa 100452
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>ref|XM_972125.1| Tetrahymena thermophila SB210 hypothetical protein
           (TTHERM_00039170) mRNA, complete cds
          Length = 2439

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 712 ttttcaaagaagacaaacaat 732
           |||||||||||||||||||||
Sbjct: 569 ttttcaaagaagacaaacaat 549
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>emb|CR855213.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20,
             complete sequence
          Length = 96688

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 553   gatgatgacaacgacatcgacgacg 577
             |||||||||||||||| ||||||||
Sbjct: 69393 gatgatgacaacgacaacgacgacg 69369
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>ref|XM_001230139.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_03624)
           mRNA, complete cds
          Length = 1641

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 553 gatgatgacaacgacatcgacgacg 577
           ||||||||||||||| |||||||||
Sbjct: 154 gatgatgacaacgacctcgacgacg 178
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>ref|NM_001055658.1| Oryza sativa (japonica cultivar-group) Os03g0173900 (Os03g0173900)
           mRNA, complete cds
          Length = 1279

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 581 ttgatccggacaacatgacatatgaggaa 609
           ||||||| ||||| |||||||||||||||
Sbjct: 565 ttgatcctgacaatatgacatatgaggaa 593
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>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome
          Length = 7804765

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 510     cgatgatgatcgcggcgacga 530
               |||||||||||||||||||||
Sbjct: 4386124 cgatgatgatcgcggcgacga 4386144
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>ref|XM_001078350.1| PREDICTED: Rattus norvegicus similar to KIAA1111-like protein
            (predicted) (RGD1310212_predicted), mRNA
          Length = 2778

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 550  gatgatgatgacaacgacatcgacgacga 578
            |||||||||||| |||||| |||||||||
Sbjct: 2461 gatgatgatgacgacgacaacgacgacga 2489
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>gb|AC102140.15| Mus musculus chromosome 3, clone RP23-286J21, complete sequence
          Length = 192833

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 54    gaaggtgagagctcagctgggagaa 78
             |||||| ||||||||||||||||||
Sbjct: 96897 gaaggtcagagctcagctgggagaa 96873
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>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 845   acaagacctgcccagtttgca 865
             |||||||||||||||||||||
Sbjct: 85894 acaagacctgcccagtttgca 85874
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>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 189477

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     gagagctcagctgggagaaga 80
              |||||||||||||||||||||
Sbjct: 157493 gagagctcagctgggagaaga 157473
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>gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, complete sequence
          Length = 180015

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    gagagctcagctgggagaaga 80
             |||||||||||||||||||||
Sbjct: 26515 gagagctcagctgggagaaga 26495
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>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214386

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 550    gatgatgatgacaacgacatcgacgacga 578
              |||||||||||| |||||| |||||||||
Sbjct: 156578 gatgatgatgacgacgacaacgacgacga 156550
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>gb|AC011597.27| Homo sapiens 3 BAC RP11-85F14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190069

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1215   gatatatatacatcaactttt 1235
              |||||||||||||||||||||
Sbjct: 176813 gatatatatacatcaactttt 176833
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 156     cacgccggtggccatggccac 176
               |||||||||||||||||||||
Sbjct: 2032415 cacgccggtggccatggccac 2032395
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 553      gatgatgacaacgacatcgacgacg 577
                |||||||||||||||| ||||||||
Sbjct: 25395761 gatgatgacaacgacaacgacgacg 25395737
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 550      gatgatgatgacaacgacatcgacg 574
                ||||||||||||||||||| |||||
Sbjct: 30956423 gatgatgatgacaacgacaacgacg 30956399
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 553      gatgatgacaacgacatcgacgacg 577
                |||||||||||||||| ||||||||
Sbjct: 30948845 gatgatgacaacgacaacgacgacg 30948869
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>gb|AY061567.1| Drosophila melanogaster SD01079 full length cDNA
          Length = 2675

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 548  aggatgatgatgacaacgacatcgacgacgatg 580
            |||||||||||||| |||||  |||||||||||
Sbjct: 2241 aggatgatgatgacgacgacgacgacgacgatg 2273
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0439E07
          Length = 176486

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 553  gatgatgacaacgacatcgacgacg 577
            |||||||||||||||| ||||||||
Sbjct: 5824 gatgatgacaacgacaacgacgacg 5848
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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0638D12
          Length = 161277

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 553    gatgatgacaacgacatcgacgacg 577
              |||||||||||||||| ||||||||
Sbjct: 149212 gatgatgacaacgacaacgacgacg 149236
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
              complete sequence
          Length = 164577

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 553    gatgatgacaacgacatcgacgacg 577
              |||||||||||||||| ||||||||
Sbjct: 122319 gatgatgacaacgacaacgacgacg 122295
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>gb|AY900631.1| Drosophila buzzatii clone BAC 5H14, complete sequence
          Length = 124024

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 556   gatgacaacgacatcgacgacgatg 580
             ||||||||||||| |||||||||||
Sbjct: 25122 gatgacaacgacaacgacgacgatg 25098
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>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0516G10
          Length = 148937

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 550   gatgatgatgacaacgacatcgacg 574
             ||||||||||||||||||| |||||
Sbjct: 11379 gatgatgatgacaacgacaacgacg 11355
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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0684F11
          Length = 147731

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 550    gatgatgatgacaacgacatcgacg 574
              ||||||||||||||||||| |||||
Sbjct: 140000 gatgatgatgacaacgacaacgacg 139976
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>emb|AL928997.8| Zebrafish DNA sequence from clone CH211-125O15 in linkage group 18,
             complete sequence
          Length = 169038

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 969   cagtacaaaagaaagaaaaga 989
             |||||||||||||||||||||
Sbjct: 12762 cagtacaaaagaaagaaaaga 12742
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>dbj|AK063978.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C08, full
           insert sequence
          Length = 1279

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 581 ttgatccggacaacatgacatatgaggaa 609
           ||||||| ||||| |||||||||||||||
Sbjct: 565 ttgatcctgacaatatgacatatgaggaa 593
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>emb|BX649599.7| Zebrafish DNA sequence from clone CH211-224B1 in linkage group 18,
              complete sequence
          Length = 162087

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 856    ccagtttgcaaatatgaagtg 876
              |||||||||||||||||||||
Sbjct: 157554 ccagtttgcaaatatgaagtg 157574
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>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence
          Length = 231380

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 845    acaagacctgcccagtttgca 865
              |||||||||||||||||||||
Sbjct: 228188 acaagacctgcccagtttgca 228208


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 242,303,017
Number of extensions: 15334174
Number of successful extensions: 368677
Number of sequences better than 10.0: 51
Number of HSP's gapped: 368677
Number of HSP's successfully gapped: 62
Length of query: 1262
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1239
Effective length of database: 18,503,978,556
Effective search space: 22926429430884
Effective search space used: 22926429430884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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