ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf54k04 |
|---|---|
| Clone Library Name | barley_pub |
>Q3SZX8:CCD25_BOVIN Coiled-coil domain-containing protein 25 - Bos taurus (Bovine)| Length = 208 Score = 228 bits (582), Expect = 3e-59 Identities = 115/199 (57%), Positives = 143/199 (71%), Gaps = 1/199 (0%) Frame = +2 Query: 224 MVFYFKARP-DAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESI 400 MVFYF + ++ YTIYMG DK ENE+LIKYG PED+WFHVDK+SSAHVYLRL KGE I Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKI 60 Query: 401 DAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVL 580 + I + +L DCA LVKA+SIQG KMNNV VVYTPWSNLK+ MDVGQ+GFH + V ++ Sbjct: 61 EDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIV 120 Query: 581 TVEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQ 760 TVEK+VNEIL+RL KT++ER PDL+AEK+ + E+ E+K Q+ Sbjct: 121 TVEKKVNEILNRLEKTKMERFPDLEAEKECRDHEERNEKKAQIQEMKRREKEEMKKKREM 180 Query: 761 AEIRSYKGLMVAEKMTSNR 817 E+RSY LM E M+SN+ Sbjct: 181 DELRSYSSLMKVENMSSNQ 199
>Q78PG9:CCD25_MOUSE Coiled-coil domain-containing protein 25 - Mus musculus (Mouse)| Length = 208 Score = 228 bits (581), Expect = 3e-59 Identities = 114/199 (57%), Positives = 143/199 (71%), Gaps = 1/199 (0%) Frame = +2 Query: 224 MVFYFKARP-DAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESI 400 MVFYF + ++ YTIYMG DK ENE+LIKYG PED+WFHVDK+SSAHVYLRL+KGE I Sbjct: 1 MVFYFTSSSVNSSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKI 60 Query: 401 DAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVL 580 + I + +L DCA LVKA+SIQG KMNNV VVYTPWSNLK+ MDVGQ+GFH + V ++ Sbjct: 61 EDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIV 120 Query: 581 TVEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQ 760 TVEK+VNEIL+RL KT++E+ PDL AEK+ + E+ E+K Q+ Sbjct: 121 TVEKKVNEILNRLEKTKLEKFPDLAAEKEGRDREERNEKKAQIQEMKRKEKEEMKKKREM 180 Query: 761 AEIRSYKGLMVAEKMTSNR 817 E+RSY LM E M+SN+ Sbjct: 181 DELRSYSSLMKVENMSSNQ 199
>Q5R9S1:CCD25_PONPY Coiled-coil domain-containing protein 25 - Pongo pygmaeus| (Orangutan) Length = 208 Score = 228 bits (580), Expect = 4e-59 Identities = 115/199 (57%), Positives = 143/199 (71%), Gaps = 1/199 (0%) Frame = +2 Query: 224 MVFYFKARP-DAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESI 400 MVFYF + ++ YTIYMG DK ENE+LIK+G PED+WFHVDK+SSAHVYLRL KGE+I Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENI 60 Query: 401 DAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVL 580 + I + +L DCA LVKA+SIQG KMNNV VVYTPWSNLK+ MDVGQ+GFH + V ++ Sbjct: 61 EDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIV 120 Query: 581 TVEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQ 760 TVEK+VNEIL+RL KT+VER PDL AEK+ + E+ E+K Q+ Sbjct: 121 TVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKRREKEEMKKKREM 180 Query: 761 AEIRSYKGLMVAEKMTSNR 817 E+RSY LM E M+SN+ Sbjct: 181 DELRSYSSLMKVENMSSNQ 199
>Q86WR0:CCD25_HUMAN Coiled-coil domain-containing protein 25 - Homo sapiens (Human)| Length = 208 Score = 228 bits (580), Expect = 4e-59 Identities = 115/199 (57%), Positives = 143/199 (71%), Gaps = 1/199 (0%) Frame = +2 Query: 224 MVFYFKARP-DAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESI 400 MVFYF + ++ YTIYMG DK ENE+LIK+G PED+WFHVDK+SSAHVYLRL KGE+I Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENI 60 Query: 401 DAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVL 580 + I + +L DCA LVKA+SIQG KMNNV VVYTPWSNLK+ MDVGQ+GFH + V ++ Sbjct: 61 EDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIV 120 Query: 581 TVEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQ 760 TVEK+VNEIL+RL KT+VER PDL AEK+ + E+ E+K Q+ Sbjct: 121 TVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREM 180 Query: 761 AEIRSYKGLMVAEKMTSNR 817 E+RSY LM E M+SN+ Sbjct: 181 DELRSYSSLMKVENMSSNQ 199
>Q6GLE1:CCD25_XENTR Coiled-coil domain-containing protein 25 - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 206 Score = 216 bits (550), Expect = 1e-55 Identities = 108/198 (54%), Positives = 142/198 (71%) Frame = +2 Query: 224 MVFYFKARPDAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESID 403 MVFYF + + YT+YMG DK ENE+LIKYG PED+WFHVDK+SSAHVYLRL+K ++I+ Sbjct: 1 MVFYFTSNVISPPYTMYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKDQTIE 60 Query: 404 AISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVLT 583 I + +L DCAQLVKA+SIQG KMNN+ VVYTPW+NLK+ MD+GQ+GFH + V +T Sbjct: 61 DIPKEVLLDCAQLVKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQKDVKTMT 120 Query: 584 VEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQA 763 VEK V++I++RL KT+ ER PDL AEK+A + E+ E+K Q+ Sbjct: 121 VEK-VSKIVNRLEKTKDERFPDLAAEKEARDREERNEKKAQIQEIKRKEKEEMKKKKEMD 179 Query: 764 EIRSYKGLMVAEKMTSNR 817 E+RSY LM +E M+SN+ Sbjct: 180 ELRSYSSLMKSENMSSNQ 197
>Q7T312:CCD25_DANRE Coiled-coil domain-containing protein 25 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 207 Score = 216 bits (550), Expect = 1e-55 Identities = 102/197 (51%), Positives = 139/197 (70%) Frame = +2 Query: 224 MVFYFKARPDAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESID 403 MVFYF + + +TIYMG DK ENE+LIKYG PED+WFHVDK+SSAHVYLR+ KG +ID Sbjct: 1 MVFYFTSAVVSPPHTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTID 60 Query: 404 AISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRMVHVLT 583 I + +L DC QLVK +SIQG KMNN+ +VYTPWSNLK+ MD+GQ+GFH + V ++ Sbjct: 61 DIPKEVLIDCVQLVKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQKEVKIVA 120 Query: 584 VEKRVNEILSRLNKTRVERRPDLKAEKDASNAAEKAERKMQLXXXXXXXXXXXXXXXXQA 763 VEK++NEI++RL KT+ ER PDL AEK++ + E+ E+K Q+ Sbjct: 121 VEKKINEIVNRLEKTKEERYPDLAAEKESRDREERNEKKAQIQEQKKKEKEEVKKKKEME 180 Query: 764 EIRSYKGLMVAEKMTSN 814 ++++Y LM ++ MT+N Sbjct: 181 DLKNYTSLMKSDNMTTN 197
>P40206:YM16_YEAST Uncharacterized protein YMR132C - Saccharomyces cerevisiae (Baker's| yeast) Length = 208 Score = 116 bits (291), Expect = 1e-25 Identities = 65/143 (45%), Positives = 91/143 (63%), Gaps = 5/143 (3%) Frame = +2 Query: 224 MVFYFKARPD--AGDYTIYMGADKNENEELIKYGLPE--DVWFHVDKVSSAHVYLRLKKG 391 MV++++++P + Y I MG DK EN+ LIK+ E VWFH DK SS HVYL+L+ Sbjct: 1 MVYFYESKPTEYSTPYQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPN 60 Query: 392 E-SIDAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKEATSMDVGQVGFHNHRM 568 E +ID I + ++ DC QL K+ SIQGNKM ++ TPW NL++ M+ G+V F + R Sbjct: 61 EKTIDDIPQEVICDCLQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSFKSLRQ 120 Query: 569 VHVLTVEKRVNEILSRLNKTRVE 637 + R N+IL+RL KTRVE Sbjct: 121 CRKMECGARDNKILNRLAKTRVE 143
>P57687:ATKC_HALSA Potassium-transporting ATPase C chain - Halobacterium salinarium| (Halobacterium halobium) Length = 216 Score = 32.0 bits (71), Expect = 4.6 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 18/167 (10%) Frame = +2 Query: 227 VFYFKARPDAGDYTIYMGADKN--------------ENEELIKYGLPEDVWFHVDKVSSA 364 V YF +RP A DY A N + + + +Y P+D S Sbjct: 71 VQYFWSRPSANDYNAMTSASTNWGPTNPLLSERVRADLQNISQYETPDD---------SV 121 Query: 365 HVYLRLKKGESIDA-ISEGLLE-DCAQLVKAHSIQGNKMNNV--EVVYTPWSNLKEATSM 532 V L + G S DA IS E ++ I ++N + E PW Sbjct: 122 PVNLVSESGSSYDAHISPAAAEYQVLRVANQTGISEQRLNEMIDEATKEPW--------- 172 Query: 533 DVGQVGFHNHRMVHVLTVEKRVNEILSRLNKTRVERRPDLKAEKDAS 673 +G H V+VL + V + L+ N+T ++ D+ A + A+ Sbjct: 173 ----LGIWGHERVNVLELNLMVRDALNEQNET--DQNSDMNASEIAN 213
>Q7V6J8:DXR_PROMM 1-deoxy-D-xylulose 5-phosphate reductoisomerase - Prochlorococcus| marinus (strain MIT 9313) Length = 412 Score = 31.6 bits (70), Expect = 6.0 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%) Frame = +2 Query: 389 GESIDAISEGLLEDCAQLVKAHSIQGNKMNNVEVVYTP----WSNLKEATSMDVGQVGFH 556 G I S L+ ++++AH + G N +E+V P S ++ A S +GQ+G+ Sbjct: 218 GRKITVDSATLMNKGLEVIEAHYLFGIDYNQIEIVIHPQSIIHSMIELADSSVLGQLGWP 277 Query: 557 NHRM--VHVLTVEKRVNEILSRLNKTRVE----RRPDLK 655 + ++ ++ L+ +R+ RLN V R PD K Sbjct: 278 DMKLPILYCLSWPERLETPWRRLNLAEVGELTFRAPDTK 316
>Q8H0T4:UPL2_ARATH E3 ubiquitin-protein ligase UPL2 - Arabidopsis thaliana (Mouse-ear| cress) Length = 3658 Score = 31.2 bits (69), Expect = 7.8 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%) Frame = -3 Query: 610 EDLIDTLLDCQDMYHPMVVEANLADIHGRRLLEIRPWR-----VDHLHIV 476 +D++D D +D Y+ +V+ + D H R++E+R WR +DH IV Sbjct: 2186 DDMVDEDEDDEDEYNDDMVDEDEDDFHETRVIEVR-WREALDGLDHFQIV 2234
>P50574:DLX2A_DANRE Homeobox protein Dlx2a - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 270 Score = 31.2 bits (69), Expect = 7.9 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 429 SSRRPSLMASMDSPFLSLR*TCADDTLSTWNQTSSGRPYLMSSSFSFLSAPM 274 SS SL S +SP L + T D +++ NQ +G PY SSS+ + + M Sbjct: 19 SSSYHSLHKSQESPTLPVS-TATDSSINNNNQQCAGSPYGQSSSYQYQNNSM 69 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 140,662,923 Number of extensions: 2611754 Number of successful extensions: 7924 Number of sequences better than 10.0: 11 Number of HSP's gapped: 7921 Number of HSP's successfully gapped: 11 Length of query: 363 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 249 Effective length of database: 69,416,809 Effective search space: 17284785441 Effective search space used: 17284785441 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
