| Clone Name | FLbaf58b16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009103.1| Triticum aestivum clone wkm2n.pk004.g13:fis, full insert mRNA sequence Length = 920 Score = 1122 bits (566), Expect = 0.0 Identities = 769/834 (92%), Gaps = 17/834 (2%) Strand = Plus / Plus Query: 84 cggccagcaagcaaccatggcgagccccgcgcgcatcgacgtggataagctgagcgtgga 143 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52 cggccagcaagcagccatggcgagccccgcgcgcatcgacgtggataagctgagcgtgga 111 Query: 144 gcagctcaaggcgctcaaggagcagaccgatctggaggtcaatctcctccaggacagcct 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 gcagctcaaggcgctcaaggagcagaccgatctggaggtcaatctcctccaggacagcct 171 Query: 204 atccaagatccgcaccgccgccactcgcctcgagaacgccacggccgccctccacgagct 263 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 172 atccaagatccgcaccgccgccacccgcctcgagaacgccacggccgccctccacgagct 231 Query: 264 ctccctccgcccccaagggaagaagctgctcgtgccgctcacggcgtccctctacgtgcc 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 232 ctccctccgcccccaagggaagaagctgctcgtgccgctcacggcgtccctctacgtgcc 291 Query: 324 cggcacgctcgacgacgccgagaaggtcctcgtcgacgttggcacgggctactacatcga 383 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 292 cggcacgctcgacgacgccgagaaggtcctcgtcgacgttggcaccggctactacattga 351 Query: 384 gaaaactatgactcaaggaaaagaatactgtgaaaggaaagttaatttgctgaagtccaa 443 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 352 gaaaactatgactcaaggaaaagaatactgtgaaaggaaaattaatttgctgaagtccaa 411 Query: 444 cttcgatgaactacttgagatggcgaccaaaaagaagagcatagcagacgagatgggcat 503 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 412 cttcgatgaactacttgagatggcgaccaaaaagaagagcatagcagatgaaatgggcat 471 Query: 504 gtttctccaagccaagctgaggcaggcatcgccgagctcgagttcatgagagcagaatgc 563 |||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||| Sbjct: 472 gtttctgcaagccaagctgaggcaggcatcaccgagctcgagttcgtgagagcggaatgc 531 Query: 564 gcaccctgtcccttgctttactg--------gagcgccaaggtggttcgctc----gcag 611 || |||||||||||||||| || ||||||| |||||||||||| |||| Sbjct: 532 gcgccctgtcccttgctttgttgccttgttggagcgccggggtggttcgctcactcgcag 591 Query: 612 ccctcaggaaacacaggacgttctttagctgttttggccgtgtgtacgaggttctctcag 671 |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||| || Sbjct: 592 ccctcagggaacataggaggttctttagctgttttggccgtgtgtgcaaggttctctgag 651 Query: 672 atggtttactgaaccagcctgctctatcgccagac-tcatcatcgagtaatttggaactc 730 ||| ||||||||| |||||||||| |||| ||||| ||||| ||||||||||||||| || Sbjct: 652 atgatttactgaaacagcctgctccatcgtcagacttcatcctcgagtaatttggaattc 711 Query: 731 ggtgtcaaac--gtgtgtcttagctgtgtagtctgcactttaatggctttgacaatcagt 788 ||| |||||| ||||||||| | || | |||| ||||||||||||||||||||| | Sbjct: 712 ggtatcaaacgtgtgtgtcttggatgcacaatctg--ctttaatggctttgacaatcaat 769 Query: 789 tatgattttgttgtattttgatgtttggatgcttggtttcgttttcacatactgttgttg 848 ||||| ||||||| ||||| |||| |||||||||||||| ||||| ||| ||||||||| Sbjct: 770 tatgagtttgttgcattttcatgtctggatgcttggttttgtttttgcatgctgttgttg 829 Query: 849 cttttcctggtacttgttgaagccttcatatatggtgtaagaagtacttctact 902 ||||||||||||||||||||| || ||||||||||||||| |||||||| |||| Sbjct: 830 cttttcctggtacttgttgaaaccgtcatatatggtgtaaaaagtacttatact 883
>gb|BT009608.1| Triticum aestivum clone wre1n.pk0099.h11:fis, full insert mRNA sequence Length = 1172 Score = 979 bits (494), Expect = 0.0 Identities = 658/710 (92%), Gaps = 7/710 (0%) Strand = Plus / Plus Query: 84 cggccagcaagcaaccatggcgagccccgcgcgcatcgacgtggataagctgagcgtgga 143 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 cggccagcaagcagccatggcgagccccgcgcgcatcgacgtggataagctgagcgtgga 505 Query: 144 gcagctcaaggcgctcaaggagcagaccgatctggaggtcaatctcctccaggacagcct 203 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 gcagcttaaggcgctcaaggagcagaccgatctggaggtcaatctcctccaggacagcct 565 Query: 204 atccaagatccgcaccgccgccactcgcctcgagaacgccacggccgccctccacgagct 263 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 566 atccaagatccgcaccgccgccgcccgcctcgagaacgccacggccgccctccacgagct 625 Query: 264 ctccctccgcccccaagggaagaagctgctcgtgccgctcacggcgtccctctacgtgcc 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 626 ctccctccgcccccaagggaagaagctgctcgtgccgctcacggcgtccctctatgtacc 685 Query: 324 cggcacgctcgacgacgccgagaaggtcctcgtcgacgttggcacgggctactacatcga 383 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct: 686 cggcacgctcgacgattccgagaaggtcctcgtcgacgttggcaccggctactacattga 745 Query: 384 gaaaactatgactcaaggaaaagaatactgtgaaaggaaagttaatttgctgaagtccaa 443 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 746 gaaaactatgactcaaggaaaagaatactgtgaaaggaaaattaatttgctgaagtccaa 805 Query: 444 cttcgatgaactacttgagatggcgaccaaaaagaagagcatagcagacgagatgggcat 503 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 806 cttcgatgaactacttgagatggcgaccaaaaagaagagcatagcagacgaaatgggcat 865 Query: 504 gtttctccaagccaagctgaggcaggcatcgccgagctcgagttcatgagagcagaatgc 563 |||||| ||||||||||||||||||||||| |||||||||||||| |||||| || || Sbjct: 866 gtttctgcaagccaagctgaggcaggcatcaccgagctcgagttcgtgagagtggagtgt 925 Query: 564 gcaccctgtcccttgctttactggagcgccaaggtggttcgctcg----cagccctcagg 619 | |||||||||||||||| |||||||| ||||||||||||| ||||||||||| Sbjct: 926 gtgccctgtcccttgctttgttggagcgctggggtggttcgctcgctctcagccctcagg 985 Query: 620 aaacacaggacgttctttagctgttttggccgtgtgtacgaggttctctcagatggttta 679 |||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||| |||| Sbjct: 986 gaacataggacgttctttagctgttttagccgtgtgtgcaaggttctctgagatgattta 1045 Query: 680 ctgaaccagcctgctctatcgccagac-tcatcatcgagtaatttggaactcggtgtcaa 738 ||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| || | Sbjct: 1046 ctgaaacagcctgctctatcgtcagacttcatcctcgagtaatttggaactcggtatcga 1105 Query: 739 acgtgt--gtcttagctgtgtagtctgcactttaatggctttgacaatca 786 |||||| ||||| | || | |||||| |||||||||||||||||||| Sbjct: 1106 acgtgtgggtcttggatgcacaatctgcaatttaatggctttgacaatca 1155
>dbj|AK064048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D11, full insert sequence Length = 919 Score = 505 bits (255), Expect = e-140 Identities = 405/455 (89%) Strand = Plus / Plus Query: 100 atggcgagccccgcgcgcatcgacgtggataagctgagcgtggagcagctcaaggcgctc 159 ||||||||||| || | ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 106 atggcgagcccgccgaggatcgaggtggagaagctgagcgtggagcagctgaaggccctc 165 Query: 160 aaggagcagaccgatctggaggtcaatctcctccaggacagcctatccaagatccgcacc 219 ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| || Sbjct: 166 aaggagcagacggatctggaggtgaacctcctccaggacagcctcaccaagatccgctcc 225 Query: 220 gccgccactcgcctcgagaacgccacggccgccctccacgagctctccctccgcccccaa 279 |||||||| ||||||||||||||| | ||||| |||||||| ||||||||||||||| || Sbjct: 226 gccgccacccgcctcgagaacgcctccgccgcgctccacgacctctccctccgccccaaa 285 Query: 280 gggaagaagctgctcgtgccgctcacggcgtccctctacgtgcccggcacgctcgacgac 339 ||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 286 gggaagaagatgctcgtgccgctcacggcgtcgctgtacgtgcccggcacgctggacgac 345 Query: 340 gccgagaaggtcctcgtcgacgttggcacgggctactacatcgagaaaactatgactcaa 399 |||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| || Sbjct: 346 tccgagaaggtgctcgtcgacgtcggcaccggctacttcatcgagaaaactatgactgaa 405 Query: 400 ggaaaagaatactgtgaaaggaaagttaatttgctgaagtccaacttcgatgaactactt 459 || ||||||||||||||||||||| |||||||||||||||| || || ||||||||| || Sbjct: 406 ggcaaagaatactgtgaaaggaaaattaatttgctgaagtctaattttgatgaactagtt 465 Query: 460 gagatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagccaag 519 |||||||| || || ||||| | |||||| ||||| ||||| | |||| ||||||||| Sbjct: 466 gagatggctacgaagaagaaaaacatagccgacgaaatgggtcggcttctacaagccaag 525 Query: 520 ctgaggcaggcatcgccgagctcgagttcatgaga 554 ||||||||| ||||||||||| ||||||||||||| Sbjct: 526 ctgaggcagtcatcgccgagcccgagttcatgaga 560
>gb|AY108477.1| Zea mays PCO063318 mRNA sequence Length = 744 Score = 402 bits (203), Expect = e-109 Identities = 395/459 (86%) Strand = Plus / Plus Query: 98 ccatggcgagccccgcgcgcatcgacgtggataagctgagcgtggagcagctcaaggcgc 157 ||||||||| ||| || || ||||| |||| ||||||||||||||||||||||||| || Sbjct: 64 ccatggcgacccctgcacggatcgagctggacaagctgagcgtggagcagctcaaggggc 123 Query: 158 tcaaggagcagaccgatctggaggtcaatctcctccaggacagcctatccaagatccgca 217 ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 124 tcaaggagcagacggatctggaggtcaacctcctccaggacagcctcaccaagatccgca 183 Query: 218 ccgccgccactcgcctcgagaacgccacggccgccctccacgagctctccctccgccccc 277 |||||||||| || |||||||||||| | ||||| ||||| || || ||||||||||||| Sbjct: 184 ccgccgccacccgactcgagaacgcctccgccgcgctccaggacctatccctccgccccc 243 Query: 278 aagggaagaagctgctcgtgccgctcacggcgtccctctacgtgcccggcacgctcgacg 337 ||||||||||| |||||||||||||||| |||||||||||||| ||||| | || |||| Sbjct: 244 aagggaagaagatgctcgtgccgctcactgcgtccctctacgttcccggttcactggacg 303 Query: 338 acgccgagaaggtcctcgtcgacgttggcacgggctactacatcgagaaaactatgactc 397 |||| ||||||||||||||||| || ||||| || |||| |||||||||||| ||| ||| Sbjct: 304 acgcggagaaggtcctcgtcgatgtcggcaccggttacttcatcgagaaaaccatggctc 363 Query: 398 aaggaaaagaatactgtgaaaggaaagttaatttgctgaagtccaacttcgatgaactac 457 | || ||||||||||||||||||||| ||||||| ||||||| || || |||||| | Sbjct: 364 aggggaaagaatactgtgaaaggaaaattaatttattgaagtcaaattttgatgaattgg 423 Query: 458 ttgagatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagcca 517 ||||| |||| || |||||||| |||||||||||| ||||| || | || ||||||| Sbjct: 424 ttgaggtggctacgaaaaagaaagccatagcagacgatatgggtttgctactacaagcca 483 Query: 518 agctgaggcaggcatcgccgagctcgagttcatgagagc 556 |||||||||| || || ||| || | ||||||||||||| Sbjct: 484 agctgaggcaagcgtcaccgggcccaagttcatgagagc 522
>dbj|AK102742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106G17, full insert sequence Length = 1596 Score = 278 bits (140), Expect = 4e-71 Identities = 197/216 (91%) Strand = Plus / Plus Query: 247 gccgccctccacgagctctccctccgcccccaagggaagaagctgctcgtgccgctcacg 306 ||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 9 gccgcgctccacgacctctccctccgccccaaagggaagaagatgctcgtgccgctcacg 68 Query: 307 gcgtccctctacgtgcccggcacgctcgacgacgccgagaaggtcctcgtcgacgttggc 366 ||||| || ||||||||||||||||| |||||| |||||||||| ||||||||||| ||| Sbjct: 69 gcgtcgctgtacgtgcccggcacgctggacgactccgagaaggtgctcgtcgacgtcggc 128 Query: 367 acgggctactacatcgagaaaactatgactcaaggaaaagaatactgtgaaaggaaagtt 426 || ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| || Sbjct: 129 accggctacttcatcgagaaaactatgactgaaggcaaagaatactgtgaaaggaaaatt 188 Query: 427 aatttgctgaagtccaacttcgatgaactacttgag 462 |||||||||||||| || || ||||||||| ||||| Sbjct: 189 aatttgctgaagtctaattttgatgaactagttgag 224 Score = 75.8 bits (38), Expect = 3e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 461 agatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagccaagc 520 ||||||| || || ||||| | |||||| ||||| ||||| | |||| |||||||||| Sbjct: 1165 agatggctacgaagaagaaaaacatagccgacgaaatgggtcggcttctacaagccaagc 1224 Query: 521 tgaggcaggcatcgccgagctcgagttcatgaga 554 |||||||| ||||||||||| ||||||||||||| Sbjct: 1225 tgaggcagtcatcgccgagcccgagttcatgaga 1258
>ref|NM_001071445.1| Oryza sativa (japonica cultivar-group) Os10g0488100 (Os10g0488100) mRNA, partial cds Length = 1556 Score = 238 bits (120), Expect = 3e-59 Identities = 168/184 (91%) Strand = Plus / Plus Query: 279 agggaagaagctgctcgtgccgctcacggcgtccctctacgtgcccggcacgctcgacga 338 |||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 1 agggaagaagatgctcgtgccgctcacggcgtcgctgtacgtgcccggcacgctggacga 60 Query: 339 cgccgagaaggtcctcgtcgacgttggcacgggctactacatcgagaaaactatgactca 398 | |||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| | Sbjct: 61 ctccgagaaggtgctcgtcgacgtcggcaccggctacttcatcgagaaaactatgactga 120 Query: 399 aggaaaagaatactgtgaaaggaaagttaatttgctgaagtccaacttcgatgaactact 458 ||| ||||||||||||||||||||| |||||||||||||||| || || ||||||||| | Sbjct: 121 aggcaaagaatactgtgaaaggaaaattaatttgctgaagtctaattttgatgaactagt 180 Query: 459 tgag 462 |||| Sbjct: 181 tgag 184 Score = 75.8 bits (38), Expect = 3e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 461 agatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagccaagc 520 ||||||| || || ||||| | |||||| ||||| ||||| | |||| |||||||||| Sbjct: 1125 agatggctacgaagaagaaaaacatagccgacgaaatgggtcggcttctacaagccaagc 1184 Query: 521 tgaggcaggcatcgccgagctcgagttcatgaga 554 |||||||| ||||||||||| ||||||||||||| Sbjct: 1185 tgaggcagtcatcgccgagcccgagttcatgaga 1218
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 202 bits (102), Expect = 2e-48 Identities = 162/182 (89%) Strand = Plus / Plus Query: 100 atggcgagccccgcgcgcatcgacgtggataagctgagcgtggagcagctcaaggcgctc 159 ||||||||||| || | ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 17959966 atggcgagcccgccgaggatcgaggtggagaagctgagcgtggagcagctgaaggccctc 17960025 Query: 160 aaggagcagaccgatctggaggtcaatctcctccaggacagcctatccaagatccgcacc 219 ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| || Sbjct: 17960026 aaggagcagacggatctggaggtgaacctcctccaggacagcctcaccaagatccgctcc 17960085 Query: 220 gccgccactcgcctcgagaacgccacggccgccctccacgagctctccctccgcccccaa 279 |||||||| ||||||||||||||| | ||||| |||||||| ||||||||||||||| || Sbjct: 17960086 gccgccacccgcctcgagaacgcctccgccgcgctccacgacctctccctccgccccaaa 17960145 Query: 280 gg 281 || Sbjct: 17960146 gg 17960147 Score = 139 bits (70), Expect = 2e-29 Identities = 97/106 (91%) Strand = Plus / Plus Query: 279 agggaagaagctgctcgtgccgctcacggcgtccctctacgtgcccggcacgctcgacga 338 |||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 17960249 agggaagaagatgctcgtgccgctcacggcgtcgctgtacgtgcccggcacgctggacga 17960308 Query: 339 cgccgagaaggtcctcgtcgacgttggcacgggctactacatcgag 384 | |||||||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 17960309 ctccgagaaggtgctcgtcgacgtcggcaccggctacttcatcgag 17960354 Score = 103 bits (52), Expect = 1e-18 Identities = 73/80 (91%) Strand = Plus / Plus Query: 383 agaaaactatgactcaaggaaaagaatactgtgaaaggaaagttaatttgctgaagtcca 442 |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| | Sbjct: 17968127 agaaaactatgactgaaggcaaagaatactgtgaaaggaaaattaatttgctgaagtcta 17968186 Query: 443 acttcgatgaactacttgag 462 | || ||||||||| ||||| Sbjct: 17968187 attttgatgaactagttgag 17968206 Score = 75.8 bits (38), Expect = 3e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 461 agatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagccaagc 520 ||||||| || || ||||| | |||||| ||||| ||||| | |||| |||||||||| Sbjct: 17969147 agatggctacgaagaagaaaaacatagccgacgaaatgggtcggcttctacaagccaagc 17969206 Query: 521 tgaggcaggcatcgccgagctcgagttcatgaga 554 |||||||| ||||||||||| ||||||||||||| Sbjct: 17969207 tgaggcagtcatcgccgagcccgagttcatgaga 17969240 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 783 atcagttatgattttgttgtatttt 807 |||| |||||||||||||||||||| Sbjct: 985899 atcatttatgattttgttgtatttt 985923
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 202 bits (102), Expect = 2e-48 Identities = 162/182 (89%) Strand = Plus / Minus Query: 100 atggcgagccccgcgcgcatcgacgtggataagctgagcgtggagcagctcaaggcgctc 159 ||||||||||| || | ||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct: 101067 atggcgagcccgccgaggatcgaggtggagaagctgagcgtggagcagctgaaggccctc 101008 Query: 160 aaggagcagaccgatctggaggtcaatctcctccaggacagcctatccaagatccgcacc 219 ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| || Sbjct: 101007 aaggagcagacggatctggaggtgaacctcctccaggacagcctcaccaagatccgctcc 100948 Query: 220 gccgccactcgcctcgagaacgccacggccgccctccacgagctctccctccgcccccaa 279 |||||||| ||||||||||||||| | ||||| |||||||| ||||||||||||||| || Sbjct: 100947 gccgccacccgcctcgagaacgcctccgccgcgctccacgacctctccctccgccccaaa 100888 Query: 280 gg 281 || Sbjct: 100887 gg 100886 Score = 139 bits (70), Expect = 2e-29 Identities = 97/106 (91%) Strand = Plus / Minus Query: 279 agggaagaagctgctcgtgccgctcacggcgtccctctacgtgcccggcacgctcgacga 338 |||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 100784 agggaagaagatgctcgtgccgctcacggcgtcgctgtacgtgcccggcacgctggacga 100725 Query: 339 cgccgagaaggtcctcgtcgacgttggcacgggctactacatcgag 384 | |||||||||| ||||||||||| ||||| ||||||| ||||||| Sbjct: 100724 ctccgagaaggtgctcgtcgacgtcggcaccggctacttcatcgag 100679 Score = 103 bits (52), Expect = 1e-18 Identities = 73/80 (91%) Strand = Plus / Minus Query: 383 agaaaactatgactcaaggaaaagaatactgtgaaaggaaagttaatttgctgaagtcca 442 |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| | Sbjct: 92906 agaaaactatgactgaaggcaaagaatactgtgaaaggaaaattaatttgctgaagtcta 92847 Query: 443 acttcgatgaactacttgag 462 | || ||||||||| ||||| Sbjct: 92846 attttgatgaactagttgag 92827 Score = 75.8 bits (38), Expect = 3e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 461 agatggcgaccaaaaagaagagcatagcagacgagatgggcatgtttctccaagccaagc 520 ||||||| || || ||||| | |||||| ||||| ||||| | |||| |||||||||| Sbjct: 91886 agatggctacgaagaagaaaaacatagccgacgaaatgggtcggcttctacaagccaagc 91827 Query: 521 tgaggcaggcatcgccgagctcgagttcatgaga 554 |||||||| ||||||||||| ||||||||||||| Sbjct: 91826 tgaggcagtcatcgccgagcccgagttcatgaga 91793
>ref|XM_001210849.1| Aspergillus terreus NIH2624 predicted protein (ATEG_00763) mRNA, complete cds Length = 1137 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Plus Query: 323 ccggcacgctcgacgacgccgag 345 ||||||||||||||||||||||| Sbjct: 509 ccggcacgctcgacgacgccgag 531
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Minus Query: 780 acaatcagttatgattttgttgtattt 806 |||||||||||||||||||||| |||| Sbjct: 26730493 acaatcagttatgattttgttgcattt 26730467
>emb|AL358789.22| Human DNA sequence from clone RP11-507C22 on chromosome 1 Contains the 5' end of the MCOLN2 gene for mucolipin 2, the MCOLN3 gene for mucolipin 3, the gene for testis development protein NYD-SP29 (NYD-SP29) and two CpG islands, complete sequence Length = 165799 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Minus Query: 831 tttcacatactgttgttgctttt 853 ||||||||||||||||||||||| Sbjct: 157001 tttcacatactgttgttgctttt 156979
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Plus Query: 780 acaatcagttatgattttgttgtattt 806 |||||||||||||||||||||| |||| Sbjct: 40629 acaatcagttatgattttgttgcattt 40655
>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104849 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Plus Query: 780 acaatcagttatgattttgttgtattt 806 |||||||||||||||||||||| |||| Sbjct: 68485 acaatcagttatgattttgttgcattt 68511
>gb|CP000119.1| Anabaena variabilis ATCC 29413 plasmid A, complete sequence Length = 366354 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Minus Query: 793 attttgttgtattttgatgttt 814 |||||||||||||||||||||| Sbjct: 68351 attttgttgtattttgatgttt 68330
>gb|U40415.2| Caenorhabditis elegans cosmid K02G10, complete sequence Length = 38439 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 gtgaaaggaaagttaatttgct 434 |||||||||||||||||||||| Sbjct: 15730 gtgaaaggaaagttaatttgct 15751
>ref|NM_076401.2| Caenorhabditis elegans K02G10.5 (K02G10.5) mRNA, complete cds Length = 2271 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 gtgaaaggaaagttaatttgct 434 |||||||||||||||||||||| Sbjct: 1408 gtgaaaggaaagttaatttgct 1387
>gb|AY106368.1| Zea mays PCO142961 mRNA sequence Length = 774 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 tccgcaccgccgccactcgcct 233 |||||||||||||||||||||| Sbjct: 57 tccgcaccgccgccactcgcct 78
>ref|XM_001209179.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_01814) mRNA, complete cds Length = 4491 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 cgccgagaaggtcctcgtcga 359 ||||||||||||||||||||| Sbjct: 81 cgccgagaaggtcctcgtcga 101
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 accatggcgagccccgcgcgc 117 ||||||||||||||||||||| Sbjct: 3094418 accatggcgagccccgcgcgc 3094398
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 783 atcagttatgattttgttgtatttt 807 |||| |||||||||||||||||||| Sbjct: 16655 atcatttatgattttgttgtatttt 16631
>gb|AC132621.5| Mus musculus BAC clone RP23-102G6 from chromosome 12, complete sequence Length = 211730 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 aaagttaatttgctgaagtcc 441 ||||||||||||||||||||| Sbjct: 114677 aaagttaatttgctgaagtcc 114657
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 gcaccgccgccactcgcctcg 235 ||||||||||||||||||||| Sbjct: 2348020 gcaccgccgccactcgcctcg 2348040
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 783 atcagttatgattttgttgtatttt 807 |||| |||||||||||||||||||| Sbjct: 985899 atcatttatgattttgttgtatttt 985923
>gb|AC109806.12| Mus musculus chromosome 1, clone RP23-310C14, complete sequence Length = 198227 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 tgattttgttgtattttgatg 811 ||||||||||||||||||||| Sbjct: 89305 tgattttgttgtattttgatg 89325
>gb|AC154105.2| Mus musculus BAC clone RP24-457N12 from chromosome 12, complete sequence Length = 237236 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 aaagttaatttgctgaagtcc 441 ||||||||||||||||||||| Sbjct: 59480 aaagttaatttgctgaagtcc 59500
>emb|AL928703.9| Mouse DNA sequence from clone RP23-308K19 on chromosome 2, complete sequence Length = 109891 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 aggaaaagaatactgtgaaag 419 ||||||||||||||||||||| Sbjct: 46678 aggaaaagaatactgtgaaag 46658
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 cgctcgacgacgccgagaagg 349 ||||||||||||||||||||| Sbjct: 1363495 cgctcgacgacgccgagaagg 1363515 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 148,748,962 Number of extensions: 8713578 Number of successful extensions: 158977 Number of sequences better than 10.0: 27 Number of HSP's gapped: 158973 Number of HSP's successfully gapped: 39 Length of query: 968 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 945 Effective length of database: 18,503,978,556 Effective search space: 17486259735420 Effective search space used: 17486259735420 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)