ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf54i10 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os09g31180:12009.t02760:unspliced-genomic 60S ribosomal protein L9, putative, expressed| Length = 2338 Score = 255 bits (552), Expect(4) = 2e-99 Identities = 107/124 (86%), Positives = 117/124 (94%) Frame = +3 / +1 Query: 93 KMKTILASETMDIPEEVTVKVSAKMISVTGPRGTLTRNFKHLNLDFQLQDGGRKLKVDAW 272 KMKTILASETM+IPE VTV+V+AK+++V GPRG LTRNFKHLNLDFQL +GGRKL+VDAW Sbjct: 112 KMKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAW 291 Query: 273 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 452 FGTRRTMAAIRTAISHVQNLITGVTKG+RYKMRFVYAHFPINASIT +N IEIRNFLGE Sbjct: 292 FGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGE 471 Query: 453 KKVR 464 KKVR Sbjct: 472 KKVR 483 Score = 89.5 bits (189), Expect(4) = 2e-99 Identities = 39/42 (92%), Positives = 42/42 (100%) Frame = +3 / +1 Query: 456 KVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQ 581 +VRKVDML+GVTILRSEKVKDE+VLDGNDIELVSRSAALINQ Sbjct: 589 QVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 714 Score = 64.8 bits (135), Expect(4) = 2e-99 Identities = 25/28 (89%), Positives = 26/28 (92%) Frame = +3 / +3 Query: 579 QKCHVKNKDIRKFLDGIYVSDKGAIKEE 662 QKCHVKNKDIRKFLDGIYVSDKG I E+ Sbjct: 1446 QKCHVKNKDIRKFLDGIYVSDKGTITED 1529 Score = 22.1 bits (42), Expect(4) = 2e-99 Identities = 7/18 (38%), Positives = 13/18 (72%) Frame = +1 / +2 Query: 721 CVVVVVILNFF*TEFCSG 774 C++++ + F TEFC+G Sbjct: 1583 CLIIL*VAIF*ETEFCNG 1636 Score = 196 bits (422), Expect(3) = 3e-80 Identities = 93/129 (72%), Positives = 95/129 (73%) Frame = -1 / -3 Query: 478 SMSTFLTFFSPRKLRISMPRLAAVMEALMGK*A*TKRIL*RKPLVTPVMRFWTWEXXXXX 299 S FLTFFSP+K ISM L VMEALMGK*A*TKRIL*R PLVTPVMRFWTWE Sbjct: 497 SKGGFLTFFSPKKFLISMAVLELVMEALMGK*A*TKRIL*R*PLVTPVMRFWTWEMAVRM 318 Query: 298 XXXXXXVPNQASTLSLRPPSCSWKSRLRCLKLRVRVPRGPVTEIILADTFTVTSSGMSIV 119 VPN AST SLRPPS SWKSRLRCLKLRV PRGP T A T TVT SG+SIV Sbjct: 317 AAMVRRVPNHASTCSLRPPSSSWKSRLRCLKLRVSFPRGPSTVTTFAATCTVTPSGISIV 138 Query: 118 SDARMVFIF 92 SDARMVFIF Sbjct: 137 SDARMVFIF 111 Score = 90.0 bits (190), Expect(3) = 3e-80 Identities = 39/41 (95%), Positives = 39/41 (95%) Frame = -1 / -3 Query: 580 WLMRAAERETSSMSLPSRTISSLTFSDRKMVTPSSMSTFLT 458 WLMRAAERETSSMSLPSRT SS TFSDRKMVTPSSMSTFLT Sbjct: 713 WLMRAAERETSSMSLPSRTSSSFTFSDRKMVTPSSMSTFLT 591 Score = 60.2 bits (125), Expect(3) = 3e-80 Identities = 25/29 (86%), Positives = 26/29 (89%) Frame = -1 / -1 Query: 661 SSLMAPLSLT*IPSKNFLISLFLTWHFWL 575 SS+M PLSLT*IPSKNFLISLF TWHF L Sbjct: 1528 SSVMVPLSLT*IPSKNFLISLFFTWHFCL 1442 Score = 65.2 bits (136), Expect(2) = 5e-21 Identities = 26/32 (81%), Positives = 28/32 (87%) Frame = +2 / +3 Query: 347 QGLPLQDALRLRSLPHQRLHHRRQPGHRDPQL 442 QGLPLQDALRLRSLPHQRLHH+ Q HRD +L Sbjct: 366 QGLPLQDALRLRSLPHQRLHHQLQHRHRDQEL 461 Score = 60.6 bits (126), Expect(2) = 5e-21 Identities = 22/27 (81%), Positives = 24/27 (88%) Frame = +2 / +2 Query: 581 EMPRQEQGYQEVLGWYLRQRQGRHQGG 661 EMPR+EQGYQEVLGWYLR+RQG H G Sbjct: 1448 EMPREEQGYQEVLGWYLRERQGYHHRG 1528 Score = 35.4 bits (71), Expect(2) = 0.45 Identities = 16/21 (76%), Positives = 16/21 (76%) Frame = -3 / -3 Query: 626 TIQELPDILVLDVAFLVDEGG 564 TIQELPDILVL VAFL G Sbjct: 1493 TIQELPDILVLHVAFLFTSKG 1431 Score = 22.1 bits (42), Expect(2) = 0.45 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -2 / -1 Query: 363 CSGSPW* 343 CSGSPW* Sbjct: 382 CSGSPW* 362
>LOC_Os02g01332:12002.t05514:unspliced-genomic 60S ribosomal protein L9, putative, expressed| Length = 3122 Score = 158 bits (340), Expect(4) = 4e-90 Identities = 66/74 (89%), Positives = 70/74 (94%) Frame = +3 / +1 Query: 240 DGGRKLKVDAWFGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAAN 419 +G RKL+VDAWFGTRRTMAAIRTAISHVQNLITGVTKG+RYKMRFVYAHFPINASIT +N Sbjct: 238 EGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSN 417 Query: 420 RGIEIRNFLGEKKV 461 IEIRNFLGEKKV Sbjct: 418 TAIEIRNFLGEKKV 459 Score = 89.5 bits (189), Expect(4) = 4e-90 Identities = 37/48 (77%), Positives = 43/48 (89%) Frame = +3 / +1 Query: 93 KMKTILASETMDIPEEVTVKVSAKMISVTGPRGTLTRNFKHLNLDFQL 236 +MKTILASETM+IP VTV V+AK+++V GPRG LTRNFKHLNLDFQL Sbjct: 85 EMKTILASETMEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQL 228 Score = 89.0 bits (188), Expect(4) = 4e-90 Identities = 39/41 (95%), Positives = 41/41 (100%) Frame = +3 / +3 Query: 459 VRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQ 581 VRKVDML+GVTILRSEKVKDE+VLDGNDIELVSRSAALINQ Sbjct: 927 VRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 1049 Score = 64.8 bits (135), Expect(4) = 4e-90 Identities = 25/28 (89%), Positives = 26/28 (92%) Frame = +3 / +2 Query: 579 QKCHVKNKDIRKFLDGIYVSDKGAIKEE 662 QKCHVKNKDIRKFLDGIYVSDKG I E+ Sbjct: 2753 QKCHVKNKDIRKFLDGIYVSDKGTITED 2836 Score = 106 bits (226), Expect(3) = 2e-51 Identities = 55/90 (61%), Positives = 58/90 (64%) Frame = -1 / -1 Query: 460 TFFSPRKLRISMPRLAAVMEALMGK*A*TKRIL*RKPLVTPVMRFWTWEXXXXXXXXXXX 281 TFFSPRK ISM L VMEALMGK A*TKRIL*R PLVTPVMRFWTWE Sbjct: 458 TFFSPRKFLISMAVLELVMEALMGKWA*TKRIL*R*PLVTPVMRFWTWEMAVRMAAMVRR 279 Query: 280 VPNQASTLSLRPPSCSWKSRLRCLKLRVRV 191 VPN AST S PS S + R L++RV Sbjct: 278 VPNHASTCSFLTPSTSSSWKSRFRCLKLRV 189 Score = 84.5 bits (178), Expect(3) = 2e-51 Identities = 35/43 (81%), Positives = 41/43 (95%) Frame = -1 / -2 Query: 580 WLMRAAERETSSMSLPSRTISSLTFSDRKMVTPSSMSTFLTFF 452 WL+ AAERETSS+SLPSRT SSLTFS+RK+VTPSSMSTFLT++ Sbjct: 1048 WLISAAERETSSISLPSRTSSSLTFSERKIVTPSSMSTFLTYY 920 Score = 59.7 bits (124), Expect(3) = 2e-51 Identities = 24/30 (80%), Positives = 28/30 (93%) Frame = -1 / -3 Query: 670 ALYSSLMAPLSLT*IPSKNFLISLFLTWHF 581 A +SS+M PLSLT*+PS+NFLISLFLTWHF Sbjct: 2844 AHWSSVMVPLSLT*MPSRNFLISLFLTWHF 2755 Score = 60.6 bits (126), Expect(2) = 2e-16 Identities = 24/33 (72%), Positives = 26/33 (78%) Frame = +2 / +3 Query: 347 QGLPLQDALRLRSLPHQRLHHRRQPGHRDPQLP 445 QGLPLQDALRL PHQRLHH+ Q HRD +LP Sbjct: 345 QGLPLQDALRLCPFPHQRLHHQLQHRHRDQELP 443 Score = 50.1 bits (103), Expect(2) = 2e-16 Identities = 20/27 (74%), Positives = 21/27 (77%) Frame = +2 / +1 Query: 581 EMPRQEQGYQEVLGWYLRQRQGRHQGG 661 EMPRQEQGYQEV GW+L Q QG H G Sbjct: 2755 EMPRQEQGYQEVPGWHLCQ*QGHHH*G 2835 Score = 73.5 bits (154), Expect(3) = 2e-16 Identities = 32/49 (65%), Positives = 36/49 (73%) Frame = -1 / -1 Query: 241 SCSWKSRLRCLKLRVRVPRGPVTEIILADTFTVTSSGMSIVSDARMVFI 95 S SWKSR RCLKLRV PRGP T A T TVT G+SIVS+A++VFI Sbjct: 233 SSSWKSRFRCLKLRVSFPRGPSTVTTFAATCTVTPDGISIVSEAKIVFI 87 Score = 35.9 bits (72), Expect(3) = 2e-16 Identities = 15/16 (93%), Positives = 16/16 (100%) Frame = -3 / -2 Query: 623 IQELPDILVLDVAFLV 576 IQELPDILVLDVAFL+ Sbjct: 2797 IQELPDILVLDVAFLL 2750 Score = 22.1 bits (42), Expect(3) = 2e-16 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -2 / -2 Query: 363 CSGSPW* 343 CSGSPW* Sbjct: 361 CSGSPW* 341
>LOC_Os09g31170:12009.t02759:unspliced-genomic expressed protein| Length = 3480 Score = 56.1 bits (116), Expect(2) = 3e-08 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = +3 / -3 Query: 588 HVKNKDIRKFLDGIYVSDKGAIKEE 662 HVKNKDIRKFLDGIYVSDKG I E+ Sbjct: 3478 HVKNKDIRKFLDGIYVSDKGTITED 3404 Score = 22.1 bits (42), Expect(2) = 3e-08 Identities = 7/18 (38%), Positives = 13/18 (72%) Frame = +1 / -2 Query: 721 CVVVVVILNFF*TEFCSG 774 C++++ + F TEFC+G Sbjct: 3350 CLIIL*VAIF*ETEFCNG 3297 Score = 56.1 bits (116), Expect = 4e-07 Identities = 20/25 (80%), Positives = 22/25 (88%) Frame = +2 / -2 Query: 587 PRQEQGYQEVLGWYLRQRQGRHQGG 661 PR+EQGYQEVLGWYLR+RQG H G Sbjct: 3479 PREEQGYQEVLGWYLRERQGYHHRG 3405 Score = 52.8 bits (109), Expect = 4e-06 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = -1 / +3 Query: 661 SSLMAPLSLT*IPSKNFLISLFLTW 587 SS+M PLSLT*IPSKNFLISLF TW Sbjct: 3405 SSVMVPLSLT*IPSKNFLISLFFTW 3479
>LOC_Os02g19100:12002.t01703:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3511 Score = 37.3 bits (75), Expect = 0.17 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 / -2 Query: 356 PLQDALRLRSLPHQRLHHRRQPGHRDP 436 P +D RS P R HHRR+PG DP Sbjct: 957 PARDLRSRRSYPRHRRHHRRRPGGTDP 877
>LOC_Os11g42880:12011.t03818:unspliced-genomic expressed protein| Length = 4200 Score = 34.5 bits (69), Expect = 1.2 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = -1 / -1 Query: 550 SSMSLPSRTISSLTFSDRKMVTPSSMSTFLTFFS 449 SS+ S IS+L F +V PSS+ T LTFFS Sbjct: 633 SSLESESFIISALNFGMSAVVVPSSLLTSLTFFS 532
>LOC_Os04g51250:12004.t04602:unspliced-genomic expressed protein| Length = 2911 Score = 33.1 bits (66), Expect = 3.0 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = -1 / -2 Query: 229 KSRLRCLKLRVRVPRGPVTEIILADTFTVTSSGMSIVSDARMV 101 K LRC+ LR+ P GPV+ ++++D +T +++ + R + Sbjct: 1488 KKSLRCVGLRIGGPSGPVSTLLVSD*QKLTHQFTAVMMNRRQL 1360
>LOC_Os04g12639:12004.t01087:unspliced-genomic carboxyl-terminal proteinase, putative, expressed| Length = 8766 Score = 33.1 bits (66), Expect = 3.0 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 / +2 Query: 371 LRLRSLPHQRLHHRRQPGHR 430 +RL +LPH+R+ RR P HR Sbjct: 3068 IRLHNLPHRRIRRRRPPHHR 3127
>LOC_Os01g53750:12001.t04794:unspliced-genomic glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed| Length = 3393 Score = 33.1 bits (66), Expect = 3.0 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +2 / +2 Query: 392 HQRLHHRRQPGHRDPQ 439 H LHHRR+ GHR+P+ Sbjct: 962 HDHLHHRRRRGHREPR 1009
>LOC_Os01g49130:12001.t04354:unspliced-genomic glycine-rich protein 2, putative| Length = 489 Score = 33.1 bits (66), Expect = 3.0 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 / -3 Query: 356 PLQDALRLRSLPHQRLHHRRQPGH 427 P + +R RS PH+R+H RR P H Sbjct: 364 PPRRRIRRRSPPHRRIHRRRPPHH 293
>LOC_Os04g27460:12004.t02449:unspliced-genomic conserved hypothetical protein| Length = 1423 Score = 32.7 bits (65), Expect = 4.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 / +1 Query: 347 QGLPLQDALRLRSLPHQRLHHRRQPGH 427 +G D R R+ P +RLHHRR+ GH Sbjct: 211 RGATWPDRQRRRARPARRLHHRRRCGH 291
>LOC_Os04g20680:12004.t01803:unspliced-genomic wall-associated kinase-like 1, putative, expressed| Length = 5307 Score = 32.7 bits (65), Expect = 4.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 / +2 Query: 347 QGLPLQDALRLRSLPHQRLHHRRQPGHRDPQ 439 Q LP + + +PH RLH RRQ G R Q Sbjct: 401 QVLPHRQRVHRHRVPHARLHRRRQRGRRRRQ 493
>LOC_Os01g08700:12001.t00748:unspliced-genomic GIGANTEA protein, putative, expressed| Length = 9202 Score = 32.7 bits (65), Expect = 4.2 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 / +3 Query: 253 LRPPSCSWKSRLRCLKLRVRVPRGPVTEIILADTFTVT 140 L+PP+ SW L LK+ +PRG +E L F T Sbjct: 6246 LQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVAT 6359
>LOC_Os12g03670:12012.t00259:unspliced-genomic D-mannose binding lectin family protein| Length = 2511 Score = 32.2 bits (64), Expect = 5.7 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +2 / +3 Query: 380 RSLPHQRLHHRRQPGHRDPQLP 445 R P RLH RR P HR P LP Sbjct: 108 RQSPPGRLHRRRGPRHRRPALP 173
>LOC_Os08g19330:12008.t01754:unspliced-genomic hypothetical protein| Length = 984 Score = 32.2 bits (64), Expect = 5.7 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -1 / +2 Query: 568 AAERETSSMSLPSRTISSLTFSDRKMVTPSSMSTFLTFFSPRKLRISMP 422 A+ R TSSMS PS + S + + PS+ S+ SPR+ R S P Sbjct: 812 ASRRRTSSMSGPSSSRGSASSAPPTRPVPSTSSSPAPPASPRRRRRSRP 958
>LOC_Os03g54000:12003.t04715:unspliced-genomic oligopeptide transporter 3, putative, expressed| Length = 4177 Score = 32.2 bits (64), Expect = 5.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +2 / +2 Query: 365 DALRLRSLPHQRLHHRRQPGHRDP 436 DALRLR + HRR PGH P Sbjct: 2786 DALRLRPRLRRHPPHRRHPGHHQP 2857
>LOC_Os12g32970:12012.t02990:unspliced-genomic membrane protein, putative, expressed| Length = 894 Score = 31.8 bits (63), Expect = 7.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +2 / -2 Query: 353 LPLQDALRLRSLPHQRLHHRRQPGHRDPQ 439 L ++ RL S HQR RRQ HR PQ Sbjct: 209 LQREEGPRLASRAHQRRRQRRQGAHRAPQ 123
>LOC_Os12g03650:12012.t00257:unspliced-genomic D-mannose binding lectin family protein, expressed| Length = 2508 Score = 31.8 bits (63), Expect = 7.9 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +2 / +3 Query: 380 RSLPHQRLHHRRQPGHRDPQLP 445 R P RLH RR P HR P LP Sbjct: 102 RQPPPGRLHRRRGPRHRRPALP 167
>LOC_Os01g23690:12001.t02095:unspliced-genomic hypothetical protein| Length = 740 Score = 31.8 bits (63), Expect = 7.9 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 / +1 Query: 277 PNQASTLSLRPPSCSWKSRLRCLKLRVR 194 P AS+ +L PPSC W R R K R R Sbjct: 565 PAAASSPTLTPPSCGWSRRWRR*KDRAR 648 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 199,130,850 Number of extensions: 2394141 Number of successful extensions: 12976 Number of sequences better than 10.0: 18 Length of query: 323 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 273 Effective length of database: 52,799,986 Effective search space: 14414396178 Effective search space used: 14414396178 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
