ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf54h05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058948.1| Oryza sativa (japonica cultivar-group) Os04g0303900 (Os04g0303900) mRNA, complete cds Length = 1184 Score = 440 bits (222), Expect = e-120 Identities = 429/498 (86%) Strand = Plus / Plus Query: 434 ctggacatccgggtggggcgggtcgtcaaggcgtggctgcacccggaggcggatactctc 493 ||||||||||||||||||||||| || |||||||||| ||||||||||||||| || || Sbjct: 482 ctggacatccgggtggggcgggtggtgaaggcgtggcggcacccggaggcggacacgctg 541 Query: 494 tacgtggaggaggtcgacgtcggtgaggagcagccgcgcaccatctgcagcggcctcgtc 553 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 542 tacgtggaggaggtcgacgtcggcgaggagcagccgcgcaccatctgcagcggcctcgtc 601 Query: 554 aaatacctacccatcgaccaactccaggacagcaatgtcattgttcttgctaacctgaaa 613 || ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 602 aactacctccccatcgaccagctccaggacagcaatgtgattgttcttgcgaacctcaaa 661 Query: 614 ccaagaaacatgcgcggcatcaagtctaatggcatgcttatgtgtgcctctgatgcttct 673 || || |||||||| || || ||||| || |||||||||||| ||| |||||||||||| Sbjct: 662 ccgaggaacatgcgggggataaagtcaaacggcatgcttatggctgcatctgatgcttct 721 Query: 674 cacgaggctgttgagttgctcacccctccagaaggttctgttcctggtgaaagggtatgg 733 || || ||| || ||||| |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 722 catgaaaatgtcgaattgcttacccctcctgaaggatctgttccaggtgaaagggtatgg 781 Query: 734 tttggatctgaagatgaaaagagtcttcaatctgaacctgcaacgggaaaccaggttcaa 793 ||||| ||||||||| |||| || ||||| ||| |||| | ||| ||||||||| Sbjct: 782 tttggtactgaagatggaaaggatcgccaatcagaagctgcttcaccaaatcaggttcaa 841 Query: 794 aagaaaaagatttgggagtctgttcagcctcaccttaagacaacggataactgcatagca 853 || || ||||||||||| || ||||||||||| |||| |||| | || ||||||| |||| Sbjct: 842 aaaaagaagatttgggaatcagttcagcctcatcttaggacatcagaaaactgcacagca 901 Query: 854 attcttggtgagcaaccaatgcgcacctcggcaggcatggttttctgcaaatcgttgcag 913 ||||||| ||||| || ||||| ||||| || || |||||||||||||| | |||||| Sbjct: 902 tttcttggcgagcacccgatgcgtacctcagcgggtgtggttttctgcaaaactttgcag 961 Query: 914 ggtgcaagagtgtcataa 931 |||||||||||||||||| Sbjct: 962 ggtgcaagagtgtcataa 979 Score = 42.1 bits (21), Expect = 4.4 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 109 cacgacgatgatggcc---gcagcgagaatggccttcgc 144 |||||||||||||||| |||||||||||||| ||||| Sbjct: 193 cacgacgatgatggccgcggcagcgagaatggcgttcgc 231
>dbj|AK108051.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H02, full insert sequence Length = 1184 Score = 440 bits (222), Expect = e-120 Identities = 429/498 (86%) Strand = Plus / Plus Query: 434 ctggacatccgggtggggcgggtcgtcaaggcgtggctgcacccggaggcggatactctc 493 ||||||||||||||||||||||| || |||||||||| ||||||||||||||| || || Sbjct: 481 ctggacatccgggtggggcgggtggtgaaggcgtggcggcacccggaggcggacacgctg 540 Query: 494 tacgtggaggaggtcgacgtcggtgaggagcagccgcgcaccatctgcagcggcctcgtc 553 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 541 tacgtggaggaggtcgacgtcggcgaggagcagccgcgcaccatctgcagcggcctcgtc 600 Query: 554 aaatacctacccatcgaccaactccaggacagcaatgtcattgttcttgctaacctgaaa 613 || ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct: 601 aactacctccccatcgaccagctccaggacagcaatgtgattgttcttgcgaacctcaaa 660 Query: 614 ccaagaaacatgcgcggcatcaagtctaatggcatgcttatgtgtgcctctgatgcttct 673 || || |||||||| || || ||||| || |||||||||||| ||| |||||||||||| Sbjct: 661 ccgaggaacatgcgggggataaagtcaaacggcatgcttatggctgcatctgatgcttct 720 Query: 674 cacgaggctgttgagttgctcacccctccagaaggttctgttcctggtgaaagggtatgg 733 || || ||| || ||||| |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 721 catgaaaatgtcgaattgcttacccctcctgaaggatctgttccaggtgaaagggtatgg 780 Query: 734 tttggatctgaagatgaaaagagtcttcaatctgaacctgcaacgggaaaccaggttcaa 793 ||||| ||||||||| |||| || ||||| ||| |||| | ||| ||||||||| Sbjct: 781 tttggtactgaagatggaaaggatcgccaatcagaagctgcttcaccaaatcaggttcaa 840 Query: 794 aagaaaaagatttgggagtctgttcagcctcaccttaagacaacggataactgcatagca 853 || || ||||||||||| || ||||||||||| |||| |||| | || ||||||| |||| Sbjct: 841 aaaaagaagatttgggaatcagttcagcctcatcttaggacatcagaaaactgcacagca 900 Query: 854 attcttggtgagcaaccaatgcgcacctcggcaggcatggttttctgcaaatcgttgcag 913 ||||||| ||||| || ||||| ||||| || || |||||||||||||| | |||||| Sbjct: 901 tttcttggcgagcacccgatgcgtacctcagcgggtgtggttttctgcaaaactttgcag 960 Query: 914 ggtgcaagagtgtcataa 931 |||||||||||||||||| Sbjct: 961 ggtgcaagagtgtcataa 978 Score = 42.1 bits (21), Expect = 4.4 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 109 cacgacgatgatggcc---gcagcgagaatggccttcgc 144 |||||||||||||||| |||||||||||||| ||||| Sbjct: 193 cacgacgatgatggccgcggcagcgagaatggcgttcgc 231
>gb|AY109000.1| Zea mays PCO134375 mRNA sequence Length = 1071 Score = 398 bits (201), Expect = e-107 Identities = 435/513 (84%) Strand = Plus / Plus Query: 419 gagctcgctggcctcctggacatccgggtggggcgggtcgtcaaggcgtggctgcacccg 478 ||||| || ||||| |||||| |||||||||| || || || ||||||||| ||||||| Sbjct: 317 gagctagcgggcctgctggacgtccgggtgggccgagtggtgaaggcgtggaggcacccg 376 Query: 479 gaggcggatactctctacgtggaggaggtcgacgtcggtgaggagcagccgcgcaccatc 538 |||||||| || |||||||| |||||||| ||||| ||||||| | |||| || |||||| Sbjct: 377 gaggcggacaccctctacgttgaggaggtggacgtaggtgaggcggagccccggaccatc 436 Query: 539 tgcagcggcctcgtcaaatacctacccatcgaccaactccaggacagcaatgtcattgtt 598 ||||||||||||||||| | ||| |||||||| ||||||||||||| || ||||||||| Sbjct: 437 tgcagcggcctcgtcaacttcctccccatcgaagaactccaggacagaaacgtcattgtt 496 Query: 599 cttgctaacctgaaaccaagaaacatgcgcggcatcaagtctaatggcatgcttatgtgt 658 ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||| | Sbjct: 497 cttgctaacctcaaaccaaggaacatgcgtggcatcaagtcaaatggcatgctcatggct 556 Query: 659 gcctctgatgcttctcacgaggctgttgagttgctcacccctccagaaggttctgttcct 718 |||||||||||||| || ||| ||| ||| |||||| |||| |||||||||| ||||| Sbjct: 557 gcctctgatgcttcccatgagaatgtggagctgctcatcccttcagaaggttcctttcct 616 Query: 719 ggtgaaagggtatggtttggatctgaagatgaaaagagtcttcaatctgaacctgcaacg 778 |||||||| |||||||| || || ||||| ||||||| | ||||||||| |||||| | Sbjct: 617 ggtgaaagagtatggttcggttccgaagaagaaaagaaccgtcaatctgaccctgcatca 676 Query: 779 ggaaaccaggttcaaaagaaaaagatttgggagtctgttcagcctcaccttaagacaacg 838 ||| ||||| |||||||| ||||| ||||| ||||||||||||| |||| ||||| Sbjct: 677 ccaaatcaggtccaaaagaagaagatctgggaagctgttcagcctcatcttagaacaaca 736 Query: 839 gataactgcatagcaattcttggtgagcaaccaatgcgcacctcggcaggcatggttttc 898 ||||||||||| || |||||||||| ||| |||||| ||||| |||||| | |||||| Sbjct: 737 gataactgcattgcggttcttggtgataaacaaatgcgtacctctgcaggcctagttttc 796 Query: 899 tgcaaatcgttgcagggtgcaagagtgtcataa 931 ||||||||| | ||||||||||||||||||||| Sbjct: 797 tgcaaatcgcttcagggtgcaagagtgtcataa 829
>gb|BT017058.1| Zea mays clone EL01N0357D07.c mRNA sequence Length = 715 Score = 357 bits (180), Expect = 6e-95 Identities = 387/456 (84%) Strand = Plus / Plus Query: 476 ccggaggcggatactctctacgtggaggaggtcgacgtcggtgaggagcagccgcgcacc 535 ||||||||||| || |||||||| |||||||| ||||| ||||||| | |||| || ||| Sbjct: 9 ccggaggcggacaccctctacgttgaggaggtggacgtaggtgaggcggagccccggacc 68 Query: 536 atctgcagcggcctcgtcaaatacctacccatcgaccaactccaggacagcaatgtcatt 595 |||||||||||||||||||| | ||| |||||||| | ||||||||||| ||||||||| Sbjct: 69 atctgcagcggcctcgtcaacttcctccccatcgaagagctccaggacagaaatgtcatt 128 Query: 596 gttcttgctaacctgaaaccaagaaacatgcgcggcatcaagtctaatggcatgcttatg 655 |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 129 gttcttgctaacctcaaaccaaggaacatgcgtggcatcaagtcaaatggcatgctcatg 188 Query: 656 tgtgcctctgatgcttctcacgaggctgttgagttgctcacccctccagaaggttctgtt 715 ||||||||||||||| || ||| ||| ||| |||||| |||| |||||||||| || Sbjct: 189 gctgcctctgatgcttcccatgagaatgtggagctgctcatcccttcagaaggttccttt 248 Query: 716 cctggtgaaagggtatggtttggatctgaagatgaaaagagtcttcaatctgaacctgca 775 ||||||||||| |||||||| || || ||||| ||||||| | ||||||||| |||||| Sbjct: 249 cctggtgaaagagtatggttcggttccgaagaagaaaagaaccgtcaatctgaccctgca 308 Query: 776 acgggaaaccaggttcaaaagaaaaagatttgggagtctgttcagcctcaccttaagaca 835 | ||| ||||| |||||||| ||||| ||||| ||||||||||||| |||| ||| Sbjct: 309 tcaccaaatcaggtccaaaagaagaagatctgggaagctgttcagcctcatcttagaaca 368 Query: 836 acggataactgcatagcaattcttggtgagcaaccaatgcgcacctcggcaggcatggtt 895 || ||||||||||| || |||||||||| ||| |||||| ||||| |||||| | ||| Sbjct: 369 acagataactgcattgcggttcttggtgataaacaaatgcgtacctctgcaggcctagtt 428 Query: 896 ttctgcaaatcgttgcagggtgcaagagtgtcataa 931 |||||||||||| | ||||||||||| ||||||||| Sbjct: 429 ttctgcaaatcgcttcagggtgcaagtgtgtcataa 464
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 214 bits (108), Expect = 5e-52 Identities = 138/148 (93%) Strand = Plus / Plus Query: 434 ctggacatccgggtggggcgggtcgtcaaggcgtggctgcacccggaggcggatactctc 493 ||||||||||||||||||||||| || |||||||||| ||||||||||||||| || || Sbjct: 13660807 ctggacatccgggtggggcgggtggtgaaggcgtggcggcacccggaggcggacacgctg 13660866 Query: 494 tacgtggaggaggtcgacgtcggtgaggagcagccgcgcaccatctgcagcggcctcgtc 553 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 13660867 tacgtggaggaggtcgacgtcggcgaggagcagccgcgcaccatctgcagcggcctcgtc 13660926 Query: 554 aaatacctacccatcgaccaactccagg 581 || ||||| ||||||||||| ||||||| Sbjct: 13660927 aactacctccccatcgaccagctccagg 13660954 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Plus Query: 578 caggacagcaatgtcattgttcttgctaacctgaaaccaagaaacatgcgcggcatcaag 637 |||||||||||||| ||||||||||| ||||| ||||| || |||||||| || || ||| Sbjct: 13661934 caggacagcaatgtgattgttcttgcgaacctcaaaccgaggaacatgcgggggataaag 13661993 Query: 638 tctaatggcatgcttatgtgtgcctctgatgcttctcacgaggctgttgagttgctcacc 697 || || |||||||||||| ||| |||||||||||||| || ||| || ||||| ||| Sbjct: 13661994 tcaaacggcatgcttatggctgcatctgatgcttctcatgaaaatgtcgaattgcttacc 13662053 Query: 698 cctccagaaggttctgttcctggtgaaagggtatggtttggatctgaagatgaaaag 754 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||| |||| Sbjct: 13662054 cctcctgaaggatctgttccaggtgaaagggtatggtttggtactgaagatggaaag 13662110 Score = 123 bits (62), Expect = 1e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 786 aggttcaaaagaaaaagatttgggagtctgttcagcctcaccttaagacaacggataact 845 |||||||||| || ||||||||||| || ||||||||||| |||| |||| | || |||| Sbjct: 13662377 aggttcaaaaaaagaagatttgggaatcagttcagcctcatcttaggacatcagaaaact 13662436 Query: 846 gcatagcaattcttggtgagcaaccaatgcgcacctcggcaggcatggttttctgcaaat 905 ||| |||| ||||||| ||||| || ||||| ||||| || || |||||||||||||| Sbjct: 13662437 gcacagcatttcttggcgagcacccgatgcgtacctcagcgggtgtggttttctgcaaaa 13662496 Query: 906 cgttgcagggtgcaagagtgtcataa 931 | |||||||||||||||||||||||| Sbjct: 13662497 ctttgcagggtgcaagagtgtcataa 13662522 Score = 46.1 bits (23), Expect = 0.28 Identities = 29/31 (93%) Strand = Plus / Plus Query: 113 acgatgatggccgcagcgagaatggccttcg 143 |||||||||||||||||||||| ||| |||| Sbjct: 13638353 acgatgatggccgcagcgagaacggcgttcg 13638383 Score = 42.1 bits (21), Expect = 4.4 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 109 cacgacgatgatggcc---gcagcgagaatggccttcgc 144 |||||||||||||||| |||||||||||||| ||||| Sbjct: 13660518 cacgacgatgatggccgcggcagcgagaatggcgttcgc 13660556
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 214 bits (108), Expect = 5e-52 Identities = 138/148 (93%) Strand = Plus / Plus Query: 434 ctggacatccgggtggggcgggtcgtcaaggcgtggctgcacccggaggcggatactctc 493 ||||||||||||||||||||||| || |||||||||| ||||||||||||||| || || Sbjct: 55415 ctggacatccgggtggggcgggtggtgaaggcgtggcggcacccggaggcggacacgctg 55474 Query: 494 tacgtggaggaggtcgacgtcggtgaggagcagccgcgcaccatctgcagcggcctcgtc 553 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 55475 tacgtggaggaggtcgacgtcggcgaggagcagccgcgcaccatctgcagcggcctcgtc 55534 Query: 554 aaatacctacccatcgaccaactccagg 581 || ||||| ||||||||||| ||||||| Sbjct: 55535 aactacctccccatcgaccagctccagg 55562 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Plus Query: 578 caggacagcaatgtcattgttcttgctaacctgaaaccaagaaacatgcgcggcatcaag 637 |||||||||||||| ||||||||||| ||||| ||||| || |||||||| || || ||| Sbjct: 56542 caggacagcaatgtgattgttcttgcgaacctcaaaccgaggaacatgcgggggataaag 56601 Query: 638 tctaatggcatgcttatgtgtgcctctgatgcttctcacgaggctgttgagttgctcacc 697 || || |||||||||||| ||| |||||||||||||| || ||| || ||||| ||| Sbjct: 56602 tcaaacggcatgcttatggctgcatctgatgcttctcatgaaaatgtcgaattgcttacc 56661 Query: 698 cctccagaaggttctgttcctggtgaaagggtatggtttggatctgaagatgaaaag 754 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||| |||| Sbjct: 56662 cctcctgaaggatctgttccaggtgaaagggtatggtttggtactgaagatggaaag 56718 Score = 123 bits (62), Expect = 1e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 786 aggttcaaaagaaaaagatttgggagtctgttcagcctcaccttaagacaacggataact 845 |||||||||| || ||||||||||| || ||||||||||| |||| |||| | || |||| Sbjct: 56985 aggttcaaaaaaagaagatttgggaatcagttcagcctcatcttaggacatcagaaaact 57044 Query: 846 gcatagcaattcttggtgagcaaccaatgcgcacctcggcaggcatggttttctgcaaat 905 ||| |||| ||||||| ||||| || ||||| ||||| || || |||||||||||||| Sbjct: 57045 gcacagcatttcttggcgagcacccgatgcgtacctcagcgggtgtggttttctgcaaaa 57104 Query: 906 cgttgcagggtgcaagagtgtcataa 931 | |||||||||||||||||||||||| Sbjct: 57105 ctttgcagggtgcaagagtgtcataa 57130 Score = 46.1 bits (23), Expect = 0.28 Identities = 29/31 (93%) Strand = Plus / Plus Query: 113 acgatgatggccgcagcgagaatggccttcg 143 |||||||||||||||||||||| ||| |||| Sbjct: 32961 acgatgatggccgcagcgagaacggcgttcg 32991 Score = 42.1 bits (21), Expect = 4.4 Identities = 35/39 (89%), Gaps = 3/39 (7%) Strand = Plus / Plus Query: 109 cacgacgatgatggcc---gcagcgagaatggccttcgc 144 |||||||||||||||| |||||||||||||| ||||| Sbjct: 55126 cacgacgatgatggccgcggcagcgagaatggcgttcgc 55164
>ref|XM_001180784.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577843 (LOC577843), partial mRNA Length = 1234 Score = 48.1 bits (24), Expect = 0.071 Identities = 36/40 (90%) Strand = Plus / Plus Query: 489 ctctctacgtggaggaggtcgacgtcggtgaggagcagcc 528 |||||||| ||||| || |||| ||||||||||||||||| Sbjct: 924 ctctctacttggagaagatcgatgtcggtgaggagcagcc 963
>ref|XM_778051.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577843 (LOC577843), partial mRNA Length = 1099 Score = 48.1 bits (24), Expect = 0.071 Identities = 36/40 (90%) Strand = Plus / Plus Query: 489 ctctctacgtggaggaggtcgacgtcggtgaggagcagcc 528 |||||||| ||||| || |||| ||||||||||||||||| Sbjct: 789 ctctctacttggagaagatcgatgtcggtgaggagcagcc 828
>ref|NM_001058947.1| Oryza sativa (japonica cultivar-group) Os04g0303500 (Os04g0303500) mRNA, complete cds Length = 2706 Score = 46.1 bits (23), Expect = 0.28 Identities = 29/31 (93%) Strand = Plus / Minus Query: 113 acgatgatggccgcagcgagaatggccttcg 143 |||||||||||||||||||||| ||| |||| Sbjct: 2648 acgatgatggccgcagcgagaacggcgttcg 2618
>gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence Length = 191358 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 926 tcataattctgattgaagagatg 948 ||||||||||||||||||||||| Sbjct: 110106 tcataattctgattgaagagatg 110084
>gb|AC022778.9| Homo sapiens chromosome 8, clone RP11-172E10, complete sequence Length = 138953 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 926 tcataattctgattgaagagatg 948 ||||||||||||||||||||||| Sbjct: 30129 tcataattctgattgaagagatg 30107
>ref|XM_001194179.1| PREDICTED: Strongylocentrotus purpuratus similar to tyrosyl-tRNA synthetase (LOC582945), mRNA Length = 1635 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 491 ctctacgtggaggaggtcgacgtcggtgaggagcagcc 528 |||||| ||||| || |||| ||||||||||||||||| Sbjct: 1210 ctctacttggagaagatcgatgtcggtgaggagcagcc 1247
>ref|XM_782874.2| PREDICTED: Strongylocentrotus purpuratus similar to tyrosyl-tRNA synthetase (LOC582945), mRNA Length = 1633 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 491 ctctacgtggaggaggtcgacgtcggtgaggagcagcc 528 |||||| ||||| || |||| ||||||||||||||||| Sbjct: 1208 ctctacttggagaagatcgatgtcggtgaggagcagcc 1245
>gb|AC147557.4| Mus musculus BAC clone RP23-452M8 from chromosome 14, complete sequence Length = 174133 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 283 tgccgccctcttctgctcttgctcct 308 |||||| ||||||||||||||||||| Sbjct: 163553 tgccgcgctcttctgctcttgctcct 163528
>gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, complete sequence Length = 222946 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 283 tgccgccctcttctgctcttgctcct 308 |||||| ||||||||||||||||||| Sbjct: 67563 tgccgcgctcttctgctcttgctcct 67538
>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence Length = 187298 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 tctgctcttgctccttgccttcctcc 319 ||||||||| |||||||||||||||| Sbjct: 29161 tctgctcttcctccttgccttcctcc 29136
>ref|NM_001048743.1| Oryza sativa (japonica cultivar-group) Os01g0180600 (Os01g0180600) mRNA, complete cds Length = 4000 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 363 agaagaagccggcgcccgcggctggggaggagg 395 |||||||||||||| | ||||| |||||||||| Sbjct: 182 agaagaagccggcggcggcggcgggggaggagg 214
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cctccgcctcccttccccgcc 183 ||||||||||||||||||||| Sbjct: 27399 cctccgcctcccttccccgcc 27419
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 gtggggcgggtcgtcaaggcg 466 ||||||||||||||||||||| Sbjct: 1052589 gtggggcgggtcgtcaaggcg 1052609
>gb|AY914922.1| Schistosoma japonicum SJCHGC00772 protein mRNA, complete cds Length = 728 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 tcttcttcctttttggctgta 972 ||||||||||||||||||||| Sbjct: 201 tcttcttcctttttggctgta 181
>gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complete sequence Length = 215584 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1039 ccacattttatagtttctcag 1059 ||||||||||||||||||||| Sbjct: 182181 ccacattttatagtttctcag 182201
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 737 ggatctgaagatgaaaagagt 757 ||||||||||||||||||||| Sbjct: 1127658 ggatctgaagatgaaaagagt 1127678
>ref|XM_387003.1| Gibberella zeae PH-1 chromosome 4 RLA0_NEUCR 60S acidic ribosomal protein P0 (FG06827.1) partial mRNA Length = 936 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 tcgacgtcggtgaggagcagc 527 ||||||||||||||||||||| Sbjct: 602 tcgacgtcggtgaggagcagc 622
>gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, complete sequence Length = 245991 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 749 gaaaagagtcttcaatctgaa 769 ||||||||||||||||||||| Sbjct: 70342 gaaaagagtcttcaatctgaa 70322
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 cctccgcctcccttccccgcc 183 ||||||||||||||||||||| Sbjct: 27242815 cctccgcctcccttccccgcc 27242795
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 agaagaagccggcgcccgcggctggggaggagg 395 |||||||||||||| | ||||| |||||||||| Sbjct: 4243350 agaagaagccggcggcggcggcgggggaggagg 4243318
>emb|AL953850.2| Human DNA sequence from clone RP11-346A18 on chromosome X, complete sequence Length = 84527 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 923 gtgtcataattctgattgaagagat 947 |||||||||||||| |||||||||| Sbjct: 60143 gtgtcataattctgtttgaagagat 60119
>gb|AC084807.12|AC084807 Arabidopsis thaliana chromosome 1 BAC T18F15 genomic sequence, complete sequence Length = 81704 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1022 atttttattgatagtatccacattttata 1050 ||||||||||||||||| || |||||||| Sbjct: 27638 atttttattgatagtattcatattttata 27610
>gb|AC104753.10| Mus musculus chromosome 7, clone RP24-168P9, complete sequence Length = 183931 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 987 gtgaaatcttcaatggaaata 1007 ||||||||||||||||||||| Sbjct: 39041 gtgaaatcttcaatggaaata 39021
>gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, complete sequence Length = 179585 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 291 tcttctgctcttgctccttgccttcctcc 319 |||||||||||| |||||| ||||||||| Sbjct: 113856 tcttctgctcttcctccttcccttcctcc 113884
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 agaagaagccggcgcccgcggctggggaggagg 395 |||||||||||||| | ||||| |||||||||| Sbjct: 81317 agaagaagccggcggcggcggcgggggaggagg 81285
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 363 agaagaagccggcgcccgcggctggggaggagg 395 |||||||||||||| | ||||| |||||||||| Sbjct: 23120 agaagaagccggcggcggcggcgggggaggagg 23088
>dbj|AK122068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117G13, full insert sequence Length = 4002 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 363 agaagaagccggcgcccgcggctggggaggagg 395 |||||||||||||| | ||||| |||||||||| Sbjct: 184 agaagaagccggcggcggcggcgggggaggagg 216
>gb|AY815988.1| Schistosoma japonicum clone SJCHGC00771 unknown mRNA Length = 611 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 tcttcttcctttttggctgta 972 ||||||||||||||||||||| Sbjct: 124 tcttcttcctttttggctgta 104
>gb|AY814044.1| Schistosoma japonicum clone SJCHGC00770 unknown mRNA Length = 597 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 tcttcttcctttttggctgta 972 ||||||||||||||||||||| Sbjct: 96 tcttcttcctttttggctgta 76 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 212,084,788 Number of extensions: 12756200 Number of successful extensions: 269591 Number of sequences better than 10.0: 35 Number of HSP's gapped: 269587 Number of HSP's successfully gapped: 47 Length of query: 1154 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1131 Effective length of database: 18,503,978,556 Effective search space: 20927999746836 Effective search space used: 20927999746836 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
