| Clone Name | FLbaf49j04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1 gene) Length = 1061 Score = 264 bits (133), Expect = 3e-67 Identities = 300/350 (85%), Gaps = 13/350 (3%) Strand = Plus / Plus Query: 68 gctgccataacggctgccgtcgttctgatctacctccgcttcaagaggtaatctggtgct 127 |||||| | ||||| |||||||| ||||||||||||||| ||||||||||||||||| || Sbjct: 637 gctgccgtcacggccgccgtcgtgctgatctacctccgcctcaagaggtaatctggtact 696 Query: 128 ttgatccgcaggaagttttgctctgctgccacagcttatggaagatttgacgagt--gtc 185 ||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||| Sbjct: 697 cggatgcgcaggaagttttgctctgctgctacagcttatggaagatttgatgagtttgtc 756 Query: 186 atggtgttgctgttagtacccaactgagag--taata------tgtcttctatcagttag 237 ||||| ||||| |||||| |||||||| ||||| || ||||||| |||||| Sbjct: 757 gtggtgatgctggtagtacggtactgagagagtaatactatgatgacttctatgagttag 816 Query: 238 ttgcttaatagactacaaaaacttagggtatctggagaatggttacgtttcatcgctgtt 297 ||||||||||| ||||| |||| |||| |||||||| | ||||| ||||||||| |||| Sbjct: 817 ttgcttaatagcctacagaaacatagg-tatctggatatcggttatgtttcatcgatgtt 875 Query: 298 tttccttaatcatcc-acgggcttttggtggtgacagtgaatgtgtacacactttgtcaa 356 || |||| |||| | ||| ||||||||||||||| ||||| | | |||||||||||| Sbjct: 876 tt-cctttatcacgctacgtgcttttggtggtgacgatgaatctcaagacactttgtcaa 934 Query: 357 ccgagcaaggctgtatgcttggttatgttatcgttatggttgctggctta 406 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 935 ccgagcaaggctgtatgcttggttatgttatcgttatggttgctggctta 984
>ref|NM_001050507.1| Oryza sativa (japonica cultivar-group) Os01g0698000 (Os01g0698000) mRNA, complete cds Length = 1440 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 93 tgatctacctccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctg 152 |||||| ||||||| ||||||||||| |||||| | |||| | ||||||||||||||||| Sbjct: 1114 tgatcttcctccgcctcaagaggtaaactggtgatctgatgcacaggaagttttgctctg 1173 Query: 153 ctgccacagcttatggaagatttgacgagt 182 |||| ||||| |||||||||||||| |||| Sbjct: 1174 ctgcgacagcctatggaagatttgatgagt 1203 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 1243 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 1298
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Minus Query: 93 tgatctacctccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctg 152 |||||| ||||||| ||||||||||| |||||| | |||| | ||||||||||||||||| Sbjct: 28875098 tgatcttcctccgcctcaagaggtaaactggtgatctgatgcacaggaagttttgctctg 28875039 Query: 153 ctgccacagcttatggaagatttgacgagt 182 |||| ||||| |||||||||||||| |||| Sbjct: 28875038 ctgcgacagcctatggaagatttgatgagt 28875009 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 28874969 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 28874914
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Minus Query: 93 tgatctacctccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctg 152 |||||| ||||||| ||||||||||| |||||| | |||| | ||||||||||||||||| Sbjct: 93141 tgatcttcctccgcctcaagaggtaaactggtgatctgatgcacaggaagttttgctctg 93082 Query: 153 ctgccacagcttatggaagatttgacgagt 182 |||| ||||| |||||||||||||| |||| Sbjct: 93081 ctgcgacagcctatggaagatttgatgagt 93052 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 93012 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 92957
>dbj|AK104701.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C09, full insert sequence Length = 1361 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 93 tgatctacctccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctg 152 |||||| ||||||| ||||||||||| |||||| | |||| | ||||||||||||||||| Sbjct: 1114 tgatcttcctccgcctcaagaggtaaactggtgatctgatgcacaggaagttttgctctg 1173 Query: 153 ctgccacagcttatggaagatttgacgagt 182 |||| ||||| |||||||||||||| |||| Sbjct: 1174 ctgcgacagcctatggaagatttgatgagt 1203
>dbj|AK067215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098I22, full insert sequence Length = 1441 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 93 tgatctacctccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctg 152 |||||| ||||||| ||||||||||| |||||| | |||| | ||||||||||||||||| Sbjct: 1115 tgatcttcctccgcctcaagaggtaaactggtgatctgatgcacaggaagttttgctctg 1174 Query: 153 ctgccacagcttatggaagatttgacgagt 182 |||| ||||| |||||||||||||| |||| Sbjct: 1175 ctgcgacagcctatggaagatttgatgagt 1204 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 1244 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 1299
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 102 tccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctgctgccacag 161 ||||| ||||||||||| | |||| |||| | |||||||||||||||||| || |||| Sbjct: 26712 tccgcctcaagaggtaaaccggtgagctgatgcacaggaagttttgctctgccgcgacag 26653 Query: 162 cttatggaagatttgacgagt 182 | |||||||||||||| |||| Sbjct: 26652 cctatggaagatttgatgagt 26632 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 26592 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 26537
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 102 tccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctgctgccacag 161 ||||| ||||||||||| | |||| |||| | |||||||||||||||||| || |||| Sbjct: 137346 tccgcctcaagaggtaaaccggtgagctgatgcacaggaagttttgctctgccgcgacag 137287 Query: 162 cttatggaagatttgacgagt 182 | |||||||||||||| |||| Sbjct: 137286 cctatggaagatttgatgagt 137266 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 137226 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 137171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 102 tccgcttcaagaggtaatctggtgctttgatccgcaggaagttttgctctgctgccacag 161 ||||| ||||||||||| | |||| |||| | |||||||||||||||||| || |||| Sbjct: 32943339 tccgcctcaagaggtaaaccggtgagctgatgcacaggaagttttgctctgccgcgacag 32943398 Query: 162 cttatggaagatttgacgagt 182 | |||||||||||||| |||| Sbjct: 32943399 cctatggaagatttgatgagt 32943419 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 210 tgagagtaatatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| || |||| ||||||| || |||||||||||||| ||||| |||| ||||| Sbjct: 32943459 tgagaatagtatgacttctatgagctagttgcttaatagcctacagaaacataggg 32943514
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 136 caggaagttttgctctgctgccacagcttatggaagatttga 177 ||||||||||||||||||||| ||||| |||| ||||||||| Sbjct: 10181111 caggaagttttgctctgctgcgacagcctatgaaagatttga 10181070 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 218 atatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| ||||||| || ||||||||||||| ||||| |||| ||||| Sbjct: 10181019 atatgacttctatgagctagttgcttaataacctacagaaacataggg 10180972
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 136 caggaagttttgctctgctgccacagcttatggaagatttga 177 ||||||||||||||||||||| ||||| |||| ||||||||| Sbjct: 140789 caggaagttttgctctgctgcgacagcctatgaaagatttga 140748 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 218 atatgtcttctatcagttagttgcttaatagactacaaaaacttaggg 265 ||||| ||||||| || ||||||||||||| ||||| |||| ||||| Sbjct: 140697 atatgacttctatgagctagttgcttaataacctacagaaacataggg 140650
>ref|NM_001062759.1| Oryza sativa (japonica cultivar-group) Os05g0548100 (Os05g0548100) mRNA, complete cds Length = 1040 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 684 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 730
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 9797 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 9843
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 26977374 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 26977420
>emb|AL136143.9| Human DNA sequence from clone RP3-399C22 on chromosome 20 Contains a putative novel gene, complete sequence Length = 87157 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 420 gcacttaatttctgtttctgata 442 ||||||||||||||||||||||| Sbjct: 24041 gcacttaatttctgtttctgata 24019
>dbj|AK100682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113L22, full insert sequence Length = 975 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 685 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 731
>dbj|AK060333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B08, full insert sequence Length = 1040 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 684 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 730
>gb|AC152970.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNOa0014E02, complete sequence Length = 33084 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 110 aagaggtaatctggtgctttgatccgcaggaagttttgctctgctgc 156 |||||||||||||||||| ||| || | ||||||||| |||||||| Sbjct: 23768 aagaggtaatctggtgctgtgacgcgtaagaagttttggtctgctgc 23814
>gb|AC016525.11| Homo sapiens chromosome 15 clone RP11-358M11 map 15q21.3, complete sequence Length = 256019 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 aggaagttttgctctgctgcc 157 ||||||||||||||||||||| Sbjct: 156913 aggaagttttgctctgctgcc 156893
>gb|AC008131.25| Homo sapiens chromosome 15 clone ctd-2265b18 map 15q21, complete sequence Length = 131891 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 aggaagttttgctctgctgcc 157 ||||||||||||||||||||| Sbjct: 30279 aggaagttttgctctgctgcc 30299
>emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster Length = 64650 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 caggggcggccggtggtgctg 71 ||||||||||||||||||||| Sbjct: 19512 caggggcggccggtggtgctg 19532
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aggggcggccggtggtgctg 71 |||||||||||||||||||| Sbjct: 1483526 aggggcggccggtggtgctg 1483545
>gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, complete sequence Length = 105583 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 gttttgctctgctgccacagctta 165 ||||||||||| |||||||||||| Sbjct: 31983 gttttgctctgttgccacagctta 32006
>gb|AC026789.5| Homo sapiens chromosome 5 clone CTD-2219P2, complete sequence Length = 176072 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gttttgctctgctgccacagctta 165 ||||||||||| |||||||||||| Sbjct: 84917 gttttgctctgttgccacagctta 84894
>gb|AC026727.6| Homo sapiens chromosome 5 clone CTD-2258D6, complete sequence Length = 176072 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gttttgctctgctgccacagctta 165 ||||||||||| |||||||||||| Sbjct: 84917 gttttgctctgttgccacagctta 84894
>gb|AC027273.5| Homo sapiens BAC clone RP11-764F10 from 4, complete sequence Length = 201621 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tacccaactgagagtaatat 221 |||||||||||||||||||| Sbjct: 117974 tacccaactgagagtaatat 117993
>emb|CR391992.5| Human DNA sequence from clone RP1-308E4 on chromosome 1 Contains a novel gene (FLJ13171) and a DnaJ (Hsp40) homolog subfamily C member 8 (DNAJC8) pseudogene, complete sequence Length = 32906 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ggaagttttgctctgctgcc 157 |||||||||||||||||||| Sbjct: 15099 ggaagttttgctctgctgcc 15118
>emb|AL031727.43|HS1056L3 Human DNA sequence from clone RP5-1056L3 on chromosome 1p35.1-36.13 Contains a novel gene, the gene for a novel protein (LOC374960), a ribosomal protein S14 (RPS14) pseudogene, the NBL1 gene for neuroblastoma suppression of tumorigenicity 1, the HTR6 gene for 5-hydroxytryptamine (serotonin) receptor 6, the 3' end of the gene for a novel protein (LOC255104) (FLJ45636) and two CpG islands, complete sequence Length = 163848 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 atatgtcttctatcagttag 237 |||||||||||||||||||| Sbjct: 141173 atatgtcttctatcagttag 141192
>emb|AL031668.23|HS64K7 Human DNA sequence from clone RP1-64K7 on chromosome 20q11.21-11.23 Contains the EIF2S2 gene for eukaryotic translation initiation factor 2 subunit 2 (beta, 38kD), a novel gene, the 5' end of a novel gene, the 3' end of the RALY gene for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow), the RPS2P1 gene for ribosomal protein S2 pseudogene 1 and two CpG islands, complete sequence Length = 139378 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gactacaaaaacttagggta 267 |||||||||||||||||||| Sbjct: 130348 gactacaaaaacttagggta 130367
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaggaggagtgcgtcgcctg 36 |||||||||||||||||||| Sbjct: 3486273 aaggaggagtgcgtcgcctg 3486254
>gb|AC008549.6|AC008549 Homo sapiens chromosome 5 clone CTC-505O3, complete sequence Length = 205342 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gttttgctctgctgccacagctta 165 ||||||||||| |||||||||||| Sbjct: 30762 gttttgctctgttgccacagctta 30739
>ref|XM_557830.1| Anopheles gambiae str. PEST ENSANGP00000026826 (ENSANGG00000022954), partial mRNA Length = 1428 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctggggtcccgaaggaggag 25 |||||||||||||||||||| Sbjct: 123 ctggggtcccgaaggaggag 142
>ref|XM_310857.2| Anopheles gambiae str. PEST ENSANGP00000012466 (ENSANGG00000009977), partial mRNA Length = 1595 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 cgaaggaggagtgcgtcgcc 34 |||||||||||||||||||| Sbjct: 1465 cgaaggaggagtgcgtcgcc 1484 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 74,783,252 Number of extensions: 3832269 Number of successful extensions: 269815 Number of sequences better than 10.0: 33 Number of HSP's gapped: 269814 Number of HSP's successfully gapped: 43 Length of query: 480 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 458 Effective length of database: 18,508,616,841 Effective search space: 8476946513178 Effective search space used: 8476946513178 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)