| Clone Name | FLbaf49g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF479052.1| Triticum aestivum p60 katanin mRNA, partial cds Length = 405 Score = 597 bits (301), Expect = e-167 Identities = 380/405 (93%), Gaps = 1/405 (0%) Strand = Plus / Plus Query: 936 tacggcgttttcctaggaggatatacgtcgaccttccgg-atgcgcagaataggatgaaa 994 |||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct: 1 tacgtcgtttgcctaggaggatatacgtggaccttccggnatgcgcagaataggatgaaa 60 Query: 995 attctcaagattttacttgccaaagaaaacctagaatctgaatttggattcgacgaacta 1054 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 attctcaagatattacttgccaaagaaaacatagaatctgaatttggattcgacgaacta 120 Query: 1055 gccaatgcaacagaaggttactctgggagtgatttgaagaacctatgtgtagctgcagcg 1114 ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 121 gccgatgcaacagaaggttactctgggagtgacttgaagaacctatgcgtagctgcagca 180 Query: 1115 tacaggccagttcatgaactgctagaagaagaaaagaaggggtctgcgggcagtacgaaa 1174 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 181 tacaggccagttcatgaactgctagaagaagaaaagaagggggctgtgggcagtacgaaa 240 Query: 1175 acttctttaaggtccttaaagctggatgactttgtccaagcgaaagccaaggtgagcccg 1234 |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 241 acttctttgaggtccttaaagttggatgactttgtccaagcgaaagccaaggtgagccca 300 Query: 1235 tccgttgctttcgacgccacgagcatgaacgagctaagaaaatggaacgaacagtacggc 1294 || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 301 tctgttgccttcgatgccacaagcatgaacgagctaagaaaatggaacgagcagtacgga 360 Query: 1295 gaaggcggcagcatgagcaagtcgccgttcgggttcggcacctaa 1339 ||||||||||||| |||||| ||||| ||||||||||||| |||| Sbjct: 361 gaaggcggcagcaggagcaaatcgccattcgggttcggcagctaa 405
>ref|NM_001063735.1| Oryza sativa (japonica cultivar-group) Os06g0225900 (Os06g0225900) mRNA, partial cds Length = 1466 Score = 486 bits (245), Expect = e-133 Identities = 410/465 (88%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 455 tggtttggagacgctgagaagctcactaaggcccttttctcctttgctagtcggctagca 514 Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggtgcaaggggtggtgcaatg 805 |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | Sbjct: 515 cctgttatcatatttgtggacgaggttgatagcttacttggtgcaagaggtggtgcattt 574 Query: 806 gaacatgaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaagg 865 ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||| |||| Sbjct: 575 gaacacgaagcaacaagaagaatgcggaatgaattcatggcagcttgggatggtttaaga 634 Query: 866 tccaaagatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagat 925 |||||||| | ||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct: 635 tccaaagagaaccaaaggatccttattcttggtgcaacaaaccgtccatttgatctagat 694 Query: 926 gacgctgtcatacggcgttttcctaggaggatatacgtcgaccttccggatgcgcagaat 985 || || || || |||||||| |||||| |||||||||| ||||||||||| | |||||| Sbjct: 695 gatgcagtaattcggcgtttacctaggcggatatacgttgaccttccggactcacagaat 754 Query: 986 aggatgaaaattctcaagattttacttgccaaagaaaacctagaatctgaatttggattc 1045 | ||||||||||| |||||||||||||| ||||||||||| |||||||| || |||| Sbjct: 755 cgaatgaaaattctgaagattttacttgcaaaagaaaacctggaatctgatttcagattt 814 Query: 1046 gacgaactagccaatgcaacagaaggttactctgggagtgatttgaagaacctatgtgta 1105 |||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| | Sbjct: 815 gacgaactagccaatgcaactgagggttactctggtagtgacttgaagaacctatgcatc 874 Query: 1106 gctgcagcgtacaggccagttcatgaactgctagaagaagaaaag 1150 || || |||||||| ||||||||||| || ||||||||||||||| Sbjct: 875 gcagctgcgtacagaccagttcatgagcttctagaagaagaaaag 919 Score = 121 bits (61), Expect = 9e-24 Identities = 139/165 (84%) Strand = Plus / Plus Query: 1178 tctttaaggtccttaaagctggatgactttgtccaagcgaaagccaaggtgagcccgtcc 1237 ||||| ||| |||||||| |||| || ||||| ||||| ||||| ||||| || || ||| Sbjct: 944 tctttgaggcccttaaagttggaggattttgtgcaagcaaaagcaaaggtaagtccatcc 1003 Query: 1238 gttgctttcgacgccacgagcatgaacgagctaagaaaatggaacgaacagtacggcgaa 1297 || ||||| ||||||||||||||||||||| || ||||||||||||| |||||||| ||| Sbjct: 1004 gtcgcttttgacgccacgagcatgaacgagttacgaaaatggaacgagcagtacggggaa 1063 Query: 1298 ggcggcagcatgagcaagtcgccgttcgggttcggcacctaacat 1342 || || |||| ||| || || || || |||||||||| ||||||| Sbjct: 1064 ggtggaagcaggagtaaatcaccatttgggttcggcagctaacat 1108
>dbj|AK058549.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C07, full insert sequence Length = 1466 Score = 486 bits (245), Expect = e-133 Identities = 410/465 (88%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 455 tggtttggagacgctgagaagctcactaaggcccttttctcctttgctagtcggctagca 514 Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggtgcaaggggtggtgcaatg 805 |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | Sbjct: 515 cctgttatcatatttgtggacgaggttgatagcttacttggtgcaagaggtggtgcattt 574 Query: 806 gaacatgaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaagg 865 ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||| |||| Sbjct: 575 gaacacgaagcaacaagaagaatgcggaatgaattcatggcagcttgggatggtttaaga 634 Query: 866 tccaaagatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagat 925 |||||||| | ||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct: 635 tccaaagagaaccaaaggatccttattcttggtgcaacaaaccgtccatttgatctagat 694 Query: 926 gacgctgtcatacggcgttttcctaggaggatatacgtcgaccttccggatgcgcagaat 985 || || || || |||||||| |||||| |||||||||| ||||||||||| | |||||| Sbjct: 695 gatgcagtaattcggcgtttacctaggcggatatacgttgaccttccggactcacagaat 754 Query: 986 aggatgaaaattctcaagattttacttgccaaagaaaacctagaatctgaatttggattc 1045 | ||||||||||| |||||||||||||| ||||||||||| |||||||| || |||| Sbjct: 755 cgaatgaaaattctgaagattttacttgcaaaagaaaacctggaatctgatttcagattt 814 Query: 1046 gacgaactagccaatgcaacagaaggttactctgggagtgatttgaagaacctatgtgta 1105 |||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| | Sbjct: 815 gacgaactagccaatgcaactgagggttactctggtagtgacttgaagaacctatgcatc 874 Query: 1106 gctgcagcgtacaggccagttcatgaactgctagaagaagaaaag 1150 || || |||||||| ||||||||||| || ||||||||||||||| Sbjct: 875 gcagctgcgtacagaccagttcatgagcttctagaagaagaaaag 919 Score = 121 bits (61), Expect = 9e-24 Identities = 139/165 (84%) Strand = Plus / Plus Query: 1178 tctttaaggtccttaaagctggatgactttgtccaagcgaaagccaaggtgagcccgtcc 1237 ||||| ||| |||||||| |||| || ||||| ||||| ||||| ||||| || || ||| Sbjct: 944 tctttgaggcccttaaagttggaggattttgtgcaagcaaaagcaaaggtaagtccatcc 1003 Query: 1238 gttgctttcgacgccacgagcatgaacgagctaagaaaatggaacgaacagtacggcgaa 1297 || ||||| ||||||||||||||||||||| || ||||||||||||| |||||||| ||| Sbjct: 1004 gtcgcttttgacgccacgagcatgaacgagttacgaaaatggaacgagcagtacggggaa 1063 Query: 1298 ggcggcagcatgagcaagtcgccgttcgggttcggcacctaacat 1342 || || |||| ||| || || || || |||||||||| ||||||| Sbjct: 1064 ggtggaagcaggagtaaatcaccatttgggttcggcagctaacat 1108
>dbj|AK242209.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075170J12, full insert sequence Length = 1498 Score = 448 bits (226), Expect = e-122 Identities = 409/470 (87%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| ||||||||| | || || ||||||||||| ||||| || || ||||| Sbjct: 671 tggtttggagatgctgagaagttgacaaaggcccttttctcctttgctagccgattagct 730 Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggtgcaaggggtggtgcaatg 805 || ||||||||||||||||||||||||||||||||| | |||||||| ||||||||| | Sbjct: 731 cccgttatcatatttgtggatgaggttgacagcttattaggtgcaagaggtggtgcattt 790 Query: 806 gaacatgaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaagg 865 || ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 791 gagcatgaagcaacaagaaggatgcggaacgaatttatggcagcttgggatggtctaagg 850 Query: 866 tccaaagatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagat 925 |||||||| || || | ||||||||||||||||| |||||||||| || ||||||||| Sbjct: 851 tccaaagagagccagcgaatccttattcttggtgcgacaaatcgtccatttgatctagat 910 Query: 926 gacgctgtcatacggcgttttcctaggaggatatacgtcgaccttccggatgcgcagaat 985 || ||||| ||||||||||| ||||| |||||||||| |||||||| ||||| ||||| Sbjct: 911 gatgctgtaatacggcgtttacctagacggatatacgtggaccttccagatgcacagaac 970 Query: 986 aggatgaaaattctcaagattttacttgccaaagaaaacctagaatctgaatttggattc 1045 | |||||||||||||||||||||||||| ||||||||| | |||||||| || |||| Sbjct: 971 cgaatgaaaattctcaagattttacttgctaaagaaaacttggaatctgatttcagattt 1030 Query: 1046 gacgaactagccaatgcaacagaaggttactctgggagtgatttgaagaacctatgtgta 1105 || ||||| |||||| | || |||||||| || || ||||||||||||||||||||| || Sbjct: 1031 gatgaacttgccaattccactgaaggttattcaggaagtgatttgaagaacctatgtata 1090 Query: 1106 gctgcagcgtacaggccagttcatgaactgctagaagaagaaaagaaggg 1155 ||| |||| || ||||||||||||||||| ||||||||||||||||||| Sbjct: 1091 gcttcagcatataggccagttcatgaacttttagaagaagaaaagaaggg 1140 Score = 81.8 bits (41), Expect = 8e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 1211 caagcgaaagccaaggtgagcccgtccgttgctttcgacgccacgagcatgaacgagcta 1270 ||||| ||||||||||| |||||||| ||| | | || || |||||||||||||| || Sbjct: 1196 caagcaaaagccaaggtaagcccgtctgtttcgtatgatgcgacgagcatgaacgaatta 1255 Query: 1271 agaaaatggaacgaacagtacggcgaaggcggcagca 1307 |||||||||||||||||||| || ||||| ||||||| Sbjct: 1256 agaaaatggaacgaacagtatggtgaaggtggcagca 1292
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 198 bits (100), Expect = 5e-47 Identities = 163/184 (88%) Strand = Plus / Plus Query: 768 aggttgacagcttacttggtgcaaggggtggtgcaatggaacatgaagcaacgagaagga 827 |||||||||||||| | |||||||| ||||||||| | || ||||||||||| ||||||| Sbjct: 31500316 aggttgacagcttattaggtgcaagaggtggtgcatttgagcatgaagcaacaagaagga 31500375 Query: 828 tgcgcaatgaatttatggcagcttgggatggtctaaggtccaaagatagtcaaaggatcc 887 |||| || |||||||||||||||||||||||||||||||||||||| || || | |||| Sbjct: 31500376 tgcggaacgaatttatggcagcttgggatggtctaaggtccaaagagagccagcgaatcc 31500435 Query: 888 ttattcttggtgcaacaaatcgtctgttcgatctagatgacgctgtcatacggcgttttc 947 ||||||||||||| |||||||||| || ||||||||||| ||||| ||||||||||| | Sbjct: 31500436 ttattcttggtgcgacaaatcgtccatttgatctagatgatgctgtaatacggcgtttac 31500495 Query: 948 ctag 951 |||| Sbjct: 31500496 ctag 31500499 Score = 113 bits (57), Expect = 2e-21 Identities = 120/141 (85%) Strand = Plus / Plus Query: 953 aggatatacgtcgaccttccggatgcgcagaataggatgaaaattctcaagattttactt 1012 ||||||||||| |||||||| ||||| ||||| | |||||||||||||||||||||||| Sbjct: 31500590 aggatatacgtggaccttccagatgcacagaaccgaatgaaaattctcaagattttactt 31500649 Query: 1013 gccaaagaaaacctagaatctgaatttggattcgacgaactagccaatgcaacagaaggt 1072 || ||||||||| | |||||||| || |||| || ||||| |||||| | || |||||| Sbjct: 31500650 gctaaagaaaacttggaatctgatttcagatttgatgaacttgccaattccactgaaggt 31500709 Query: 1073 tactctgggagtgatttgaag 1093 || || || |||||||||||| Sbjct: 31500710 tattcaggaagtgatttgaag 31500730 Score = 87.7 bits (44), Expect = 1e-13 Identities = 86/100 (86%) Strand = Plus / Plus Query: 672 ttttctgtcaacaatggtttggagacgctgagaagctcaccaaagcccttttctcgtttg 731 |||||| | |||| ||||||||||| ||||||||| | || || ||||||||||| |||| Sbjct: 31500129 ttttctttgaacagtggtttggagatgctgagaagttgacaaaggcccttttctcctttg 31500188 Query: 732 caagtcggctagctcctgttatcatatttgtggatgaggt 771 | || || ||||||| ||||||||||||||||||||||| Sbjct: 31500189 ctagccgattagctcccgttatcatatttgtggatgaggt 31500228 Score = 77.8 bits (39), Expect = 1e-10 Identities = 57/63 (90%) Strand = Plus / Plus Query: 1092 agaacctatgtgtagctgcagcgtacaggccagttcatgaactgctagaagaagaaaaga 1151 ||||||||||| ||||| |||| || ||||||||||||||||| ||||||||||||||| Sbjct: 31500839 agaacctatgtatagcttcagcatataggccagttcatgaacttttagaagaagaaaaga 31500898 Query: 1152 agg 1154 ||| Sbjct: 31500899 agg 31500901 Score = 69.9 bits (35), Expect = 3e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 1253 acgagcatgaacgagctaagaaaatggaacgaacagtacggcgaaggcggcagca 1307 |||||||||||||| |||||||||||||||||||||| || ||||| ||||||| Sbjct: 31501163 acgagcatgaacgaattaagaaaatggaacgaacagtatggtgaaggtggcagca 31501217 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 ctgtctgctgctgctttacat 578 ||||||||||||||||||||| Sbjct: 35234377 ctgtctgctgctgctttacat 35234357
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 198 bits (100), Expect = 5e-47 Identities = 163/184 (88%) Strand = Plus / Plus Query: 768 aggttgacagcttacttggtgcaaggggtggtgcaatggaacatgaagcaacgagaagga 827 |||||||||||||| | |||||||| ||||||||| | || ||||||||||| ||||||| Sbjct: 135713 aggttgacagcttattaggtgcaagaggtggtgcatttgagcatgaagcaacaagaagga 135772 Query: 828 tgcgcaatgaatttatggcagcttgggatggtctaaggtccaaagatagtcaaaggatcc 887 |||| || |||||||||||||||||||||||||||||||||||||| || || | |||| Sbjct: 135773 tgcggaacgaatttatggcagcttgggatggtctaaggtccaaagagagccagcgaatcc 135832 Query: 888 ttattcttggtgcaacaaatcgtctgttcgatctagatgacgctgtcatacggcgttttc 947 ||||||||||||| |||||||||| || ||||||||||| ||||| ||||||||||| | Sbjct: 135833 ttattcttggtgcgacaaatcgtccatttgatctagatgatgctgtaatacggcgtttac 135892 Query: 948 ctag 951 |||| Sbjct: 135893 ctag 135896 Score = 113 bits (57), Expect = 2e-21 Identities = 120/141 (85%) Strand = Plus / Plus Query: 953 aggatatacgtcgaccttccggatgcgcagaataggatgaaaattctcaagattttactt 1012 ||||||||||| |||||||| ||||| ||||| | |||||||||||||||||||||||| Sbjct: 135987 aggatatacgtggaccttccagatgcacagaaccgaatgaaaattctcaagattttactt 136046 Query: 1013 gccaaagaaaacctagaatctgaatttggattcgacgaactagccaatgcaacagaaggt 1072 || ||||||||| | |||||||| || |||| || ||||| |||||| | || |||||| Sbjct: 136047 gctaaagaaaacttggaatctgatttcagatttgatgaacttgccaattccactgaaggt 136106 Query: 1073 tactctgggagtgatttgaag 1093 || || || |||||||||||| Sbjct: 136107 tattcaggaagtgatttgaag 136127 Score = 87.7 bits (44), Expect = 1e-13 Identities = 86/100 (86%) Strand = Plus / Plus Query: 672 ttttctgtcaacaatggtttggagacgctgagaagctcaccaaagcccttttctcgtttg 731 |||||| | |||| ||||||||||| ||||||||| | || || ||||||||||| |||| Sbjct: 135526 ttttctttgaacagtggtttggagatgctgagaagttgacaaaggcccttttctcctttg 135585 Query: 732 caagtcggctagctcctgttatcatatttgtggatgaggt 771 | || || ||||||| ||||||||||||||||||||||| Sbjct: 135586 ctagccgattagctcccgttatcatatttgtggatgaggt 135625 Score = 77.8 bits (39), Expect = 1e-10 Identities = 57/63 (90%) Strand = Plus / Plus Query: 1092 agaacctatgtgtagctgcagcgtacaggccagttcatgaactgctagaagaagaaaaga 1151 ||||||||||| ||||| |||| || ||||||||||||||||| ||||||||||||||| Sbjct: 136236 agaacctatgtatagcttcagcatataggccagttcatgaacttttagaagaagaaaaga 136295 Query: 1152 agg 1154 ||| Sbjct: 136296 agg 136298 Score = 69.9 bits (35), Expect = 3e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 1253 acgagcatgaacgagctaagaaaatggaacgaacagtacggcgaaggcggcagca 1307 |||||||||||||| |||||||||||||||||||||| || ||||| ||||||| Sbjct: 136560 acgagcatgaacgaattaagaaaatggaacgaacagtatggtgaaggtggcagca 136614
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 184 bits (93), Expect = 7e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 768 aggttgacagcttacttggtgcaaggggtggtgcaatggaacatgaagcaacgagaagga 827 ||||||| ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| | Sbjct: 6515923 aggttgatagcttacttggtgcaagaggtggtgcatttgaacacgaagcaacaagaagaa 6515864 Query: 828 tgcgcaatgaatttatggcagcttgggatggtctaaggtccaaagatagtcaaaggatcc 887 |||| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||| Sbjct: 6515863 tgcggaatgaattcatggcagcttgggatggtttaagatccaaagagaaccaaaggatcc 6515804 Query: 888 ttattcttggtgcaacaaatcgtctgttcgatctagatgacgctgtcatacggcgttttc 947 ||||||||||||||||||| |||| || ||||||||||| || || || |||||||| | Sbjct: 6515803 ttattcttggtgcaacaaaccgtccatttgatctagatgatgcagtaattcggcgtttac 6515744 Query: 948 ctagg 952 ||||| Sbjct: 6515743 ctagg 6515739 Score = 145 bits (73), Expect = 6e-31 Identities = 124/141 (87%) Strand = Plus / Minus Query: 953 aggatatacgtcgaccttccggatgcgcagaataggatgaaaattctcaagattttactt 1012 ||||||||||| ||||||||||| | |||||| | ||||||||||| |||||||||||| Sbjct: 6515652 aggatatacgttgaccttccggactcacagaatcgaatgaaaattctgaagattttactt 6515593 Query: 1013 gccaaagaaaacctagaatctgaatttggattcgacgaactagccaatgcaacagaaggt 1072 || ||||||||||| |||||||| || |||| |||||||||||||||||||| || ||| Sbjct: 6515592 gcaaaagaaaacctggaatctgatttcagatttgacgaactagccaatgcaactgagggt 6515533 Query: 1073 tactctgggagtgatttgaag 1093 |||||||| ||||| |||||| Sbjct: 6515532 tactctggtagtgacttgaag 6515512 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Minus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 6516126 tggtttggagacgctgagaagctcactaaggcccttttctcctttgctagtcggctagca 6516067 Query: 746 cctgttatcatatttgtggatgaggt 771 |||||||||||||||||||| ||||| Sbjct: 6516066 cctgttatcatatttgtggacgaggt 6516041 Score = 95.6 bits (48), Expect = 5e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 1235 tccgttgctttcgacgccacgagcatgaacgagctaagaaaatggaacgaacagtacggc 1294 ||||| ||||| ||||||||||||||||||||| || ||||||||||||| |||||||| Sbjct: 6515025 tccgtcgcttttgacgccacgagcatgaacgagttacgaaaatggaacgagcagtacggg 6514966 Query: 1295 gaaggcggcagcatgagcaagtcgccgttcgggttcggcacctaacat 1342 ||||| || |||| ||| || || || || |||||||||| ||||||| Sbjct: 6514965 gaaggtggaagcaggagtaaatcaccatttgggttcggcagctaacat 6514918 Score = 87.7 bits (44), Expect = 1e-13 Identities = 86/100 (86%) Strand = Plus / Minus Query: 672 ttttctgtcaacaatggtttggagacgctgagaagctcaccaaagcccttttctcgtttg 731 |||||| | |||| ||||||||||| ||||||||| | || || ||||||||||| |||| Sbjct: 17944120 ttttctttgaacagtggtttggagatgctgagaagttgacaaaggcccttttctcctttg 17944061 Query: 732 caagtcggctagctcctgttatcatatttgtggatgaggt 771 | || || ||||||| ||||||||||||||||||||||| Sbjct: 17944060 ctagccgattagctcccgttatcatatttgtggatgaggt 17944021 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Minus Query: 1112 gcgtacaggccagttcatgaactgctagaagaagaaaag 1150 |||||||| ||||||||||| || ||||||||||||||| Sbjct: 6515382 gcgtacagaccagttcatgagcttctagaagaagaaaag 6515344
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 184 bits (93), Expect = 7e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 768 aggttgacagcttacttggtgcaaggggtggtgcaatggaacatgaagcaacgagaagga 827 ||||||| ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| | Sbjct: 32299 aggttgatagcttacttggtgcaagaggtggtgcatttgaacacgaagcaacaagaagaa 32240 Query: 828 tgcgcaatgaatttatggcagcttgggatggtctaaggtccaaagatagtcaaaggatcc 887 |||| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||| Sbjct: 32239 tgcggaatgaattcatggcagcttgggatggtttaagatccaaagagaaccaaaggatcc 32180 Query: 888 ttattcttggtgcaacaaatcgtctgttcgatctagatgacgctgtcatacggcgttttc 947 ||||||||||||||||||| |||| || ||||||||||| || || || |||||||| | Sbjct: 32179 ttattcttggtgcaacaaaccgtccatttgatctagatgatgcagtaattcggcgtttac 32120 Query: 948 ctagg 952 ||||| Sbjct: 32119 ctagg 32115 Score = 145 bits (73), Expect = 6e-31 Identities = 124/141 (87%) Strand = Plus / Minus Query: 953 aggatatacgtcgaccttccggatgcgcagaataggatgaaaattctcaagattttactt 1012 ||||||||||| ||||||||||| | |||||| | ||||||||||| |||||||||||| Sbjct: 32028 aggatatacgttgaccttccggactcacagaatcgaatgaaaattctgaagattttactt 31969 Query: 1013 gccaaagaaaacctagaatctgaatttggattcgacgaactagccaatgcaacagaaggt 1072 || ||||||||||| |||||||| || |||| |||||||||||||||||||| || ||| Sbjct: 31968 gcaaaagaaaacctggaatctgatttcagatttgacgaactagccaatgcaactgagggt 31909 Query: 1073 tactctgggagtgatttgaag 1093 |||||||| ||||| |||||| Sbjct: 31908 tactctggtagtgacttgaag 31888 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Minus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 32502 tggtttggagacgctgagaagctcactaaggcccttttctcctttgctagtcggctagca 32443 Query: 746 cctgttatcatatttgtggatgaggt 771 |||||||||||||||||||| ||||| Sbjct: 32442 cctgttatcatatttgtggacgaggt 32417 Score = 95.6 bits (48), Expect = 5e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 1235 tccgttgctttcgacgccacgagcatgaacgagctaagaaaatggaacgaacagtacggc 1294 ||||| ||||| ||||||||||||||||||||| || ||||||||||||| |||||||| Sbjct: 31401 tccgtcgcttttgacgccacgagcatgaacgagttacgaaaatggaacgagcagtacggg 31342 Query: 1295 gaaggcggcagcatgagcaagtcgccgttcgggttcggcacctaacat 1342 ||||| || |||| ||| || || || || |||||||||| ||||||| Sbjct: 31341 gaaggtggaagcaggagtaaatcaccatttgggttcggcagctaacat 31294 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Minus Query: 1112 gcgtacaggccagttcatgaactgctagaagaagaaaag 1150 |||||||| ||||||||||| || ||||||||||||||| Sbjct: 31758 gcgtacagaccagttcatgagcttctagaagaagaaaag 31720
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 115 bits (58), Expect = 5e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 298 agggttcttctttcttctgcagcttataatgatgctatggtgctactttatggttgtttt 357 |||| |||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct: 16599041 agggatcttgtttcttctgcagcttgcaatgattatatggtgctacttgatggttgtttt 16599100 Query: 358 tacgaatcctggagctgtaccaggaaactggagacatgctgctgaagaggatgg 411 || ||||||| |||||||| | |||||||||||||||| ||||||||||||| Sbjct: 16599101 caccgatcctggtgctgtacctgaaaactggagacatgcttctgaagaggatgg 16599154
>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0003B09 Length = 161813 Score = 115 bits (58), Expect = 5e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 298 agggttcttctttcttctgcagcttataatgatgctatggtgctactttatggttgtttt 357 |||| |||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct: 89661 agggatcttgtttcttctgcagcttgcaatgattatatggtgctacttgatggttgtttt 89720 Query: 358 tacgaatcctggagctgtaccaggaaactggagacatgctgctgaagaggatgg 411 || ||||||| |||||||| | |||||||||||||||| ||||||||||||| Sbjct: 89721 caccgatcctggtgctgtacctgaaaactggagacatgcttctgaagaggatgg 89774
>ref|NM_001066128.1| Oryza sativa (japonica cultivar-group) Os07g0467800 (Os07g0467800) mRNA, partial cds Length = 2327 Score = 113 bits (57), Expect = 2e-21 Identities = 96/109 (88%) Strand = Plus / Plus Query: 303 tcttctttcttctgcagcttataatgatgctatggtgctactttatggttgtttttacga 362 |||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| || Sbjct: 310 tcttgtttcttctgcagcttgcaatgattatatggtgctacttgatggttgttttcaccg 369 Query: 363 atcctggagctgtaccaggaaactggagacatgctgctgaagaggatgg 411 ||||||| |||||||| | |||||||||||||||| ||||||||||||| Sbjct: 370 atcctggtgctgtacctgaaaactggagacatgcttctgaagaggatgg 418
>dbj|AK072236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003N03, full insert sequence Length = 2328 Score = 113 bits (57), Expect = 2e-21 Identities = 96/109 (88%) Strand = Plus / Plus Query: 303 tcttctttcttctgcagcttataatgatgctatggtgctactttatggttgtttttacga 362 |||| ||||||||||||||| |||||| ||||||||||||| ||||||||||| || Sbjct: 311 tcttgtttcttctgcagcttgcaatgattatatggtgctacttgatggttgttttcaccg 370 Query: 363 atcctggagctgtaccaggaaactggagacatgctgctgaagaggatgg 411 ||||||| |||||||| | |||||||||||||||| ||||||||||||| Sbjct: 371 atcctggtgctgtacctgaaaactggagacatgcttctgaagaggatgg 419
>gb|AY104527.1| Zea mays PCO064500 mRNA sequence Length = 596 Score = 89.7 bits (45), Expect = 3e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 |||||||||||||| ||||||||||| || ||||||||||| ||||| | ||| |||||| Sbjct: 524 tggtttggagacgcagagaagctcacaaaggcccttttctcctttgcgactcgactagct 583 Query: 746 cctgttatcatat 758 ||||||||||||| Sbjct: 584 cctgttatcatat 596
>ref|NM_001064265.1| Oryza sativa (japonica cultivar-group) Os06g0509100 (Os06g0509100) mRNA, partial cds Length = 3265 Score = 87.7 bits (44), Expect = 1e-13 Identities = 77/88 (87%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| ||||||||| | || || ||||||||||| ||||| || || ||||| Sbjct: 1356 tggtttggagatgctgagaagttgacaaaggcccttttctcctttgctagccgattagct 1415 Query: 746 cctgttatcatatttgtggatgaggttg 773 || ||||||||||||||||||||||||| Sbjct: 1416 cccgttatcatatttgtggatgaggttg 1443
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 87.7 bits (44), Expect = 1e-13 Identities = 86/100 (86%) Strand = Plus / Minus Query: 672 ttttctgtcaacaatggtttggagacgctgagaagctcaccaaagcccttttctcgtttg 731 |||||| | |||| ||||||||||| ||||||||| | || || ||||||||||| |||| Sbjct: 10426 ttttctttgaacagtggtttggagatgctgagaagttgacaaaggcccttttctcctttg 10367 Query: 732 caagtcggctagctcctgttatcatatttgtggatgaggt 771 | || || ||||||| ||||||||||||||||||||||| Sbjct: 10366 ctagccgattagctcccgttatcatatttgtggatgaggt 10327
>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0561B08 Length = 161083 Score = 87.7 bits (44), Expect = 1e-13 Identities = 86/100 (86%) Strand = Plus / Minus Query: 672 ttttctgtcaacaatggtttggagacgctgagaagctcaccaaagcccttttctcgtttg 731 |||||| | |||| ||||||||||| ||||||||| | || || ||||||||||| |||| Sbjct: 149309 ttttctttgaacagtggtttggagatgctgagaagttgacaaaggcccttttctcctttg 149250 Query: 732 caagtcggctagctcctgttatcatatttgtggatgaggt 771 | || || ||||||| ||||||||||||||||||||||| Sbjct: 149249 ctagccgattagctcccgttatcatatttgtggatgaggt 149210
>dbj|AK100292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075L12, full insert sequence Length = 2886 Score = 87.7 bits (44), Expect = 1e-13 Identities = 77/88 (87%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| ||||||||| | || || ||||||||||| ||||| || || ||||| Sbjct: 890 tggtttggagatgctgagaagttgacaaaggcccttttctcctttgctagccgattagct 949 Query: 746 cctgttatcatatttgtggatgaggttg 773 || ||||||||||||||||||||||||| Sbjct: 950 cccgttatcatatttgtggatgaggttg 977
>dbj|AK072143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F03, full insert sequence Length = 3267 Score = 87.7 bits (44), Expect = 1e-13 Identities = 77/88 (87%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| ||||||||| | || || ||||||||||| ||||| || || ||||| Sbjct: 1357 tggtttggagatgctgagaagttgacaaaggcccttttctcctttgctagccgattagct 1416 Query: 746 cctgttatcatatttgtggatgaggttg 773 || ||||||||||||||||||||||||| Sbjct: 1417 cccgttatcatatttgtggatgaggttg 1444
>ref|NM_112864.3| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (AT3G19740) mRNA, complete cds Length = 1406 Score = 85.7 bits (43), Expect = 5e-13 Identities = 199/251 (79%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| || ||||||||||| || || | ||||| |||||||| ||||| Sbjct: 652 tggtttggagatgcagagaagctcacgaaggctttgttctcttttgcaagcaaactagcc 711 Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggtgcaaggggtggtgcaatg 805 || || || |||||||| |||||||||||||| || | ||||| | |||||||| | Sbjct: 712 cccgtcattatatttgttgatgaggttgacagtttgttgggtgctcgtggtggtgctttt 771 Query: 806 gaacatgaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaagg 865 || || || ||||| |||| ||| | ||||| |||||||||||||||||||| || || Sbjct: 772 gagcacgaggcaacacgaagaatgagaaatgagtttatggcagcttgggatggactcaga 831 Query: 866 tccaaagatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagat 925 || |||||||| |||||||| || ||||| ||||| || || || | || ||||| ||| Sbjct: 832 tcaaaagatagccaaaggattctcattctcggtgccaccaaccgaccttttgatcttgat 891 Query: 926 gacgctgtcat 936 ||||||||||| Sbjct: 892 gacgctgtcat 902
>gb|BT014736.1| Arabidopsis thaliana At3g19740.1 mRNA sequence Length = 1299 Score = 85.7 bits (43), Expect = 5e-13 Identities = 199/251 (79%) Strand = Plus / Plus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| || ||||||||||| || || | ||||| |||||||| ||||| Sbjct: 652 tggtttggagatgcagagaagctcacgaaggctttgttctcttttgcaagcaaactagcc 711 Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggtgcaaggggtggtgcaatg 805 || || || |||||||| |||||||||||||| || | ||||| | |||||||| | Sbjct: 712 cccgtcattatatttgttgatgaggttgacagtttgttgggtgctcgtggtggtgctttt 771 Query: 806 gaacatgaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaagg 865 || || || ||||| |||| ||| | ||||| |||||||||||||||||||| || || Sbjct: 772 gagcacgaggcaacacgaagaatgagaaatgagtttatggcagcttgggatggactcaga 831 Query: 866 tccaaagatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagat 925 || |||||||| |||||||| || ||||| ||||| || || || | || ||||| ||| Sbjct: 832 tcaaaagatagccaaaggattctcattctcggtgccaccaaccgaccttttgatcttgat 891 Query: 926 gacgctgtcat 936 ||||||||||| Sbjct: 892 gacgctgtcat 902
>ref|NM_103899.3| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (AT1G50140) mRNA, complete cds Length = 2063 Score = 79.8 bits (40), Expect = 3e-11 Identities = 127/156 (81%) Strand = Plus / Plus Query: 812 gaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaaggtccaaa 871 ||||| || ||||| ||| | ||||| || |||||||||||||| || || ||||| ||| Sbjct: 1402 gaagctaccagaagaatgagaaatgagttcatggcagcttgggacgggctcaggtcaaaa 1461 Query: 872 gatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagatgacgct 931 || || ||||||||||| ||||||||||| || || |||| || ||||| ||||| ||| Sbjct: 1462 gacagccaaaggatcctcattcttggtgccaccaaccgtccctttgatcttgatgatgct 1521 Query: 932 gtcatacggcgttttcctaggaggatatacgtcgac 967 ||||| || ||| | || ||| ||||||| |||||| Sbjct: 1522 gtcattcgtcgtctaccaaggcggatatatgtcgac 1557 Score = 50.1 bits (25), Expect = 0.027 Identities = 67/81 (82%) Strand = Plus / Plus Query: 1067 gaaggttactctgggagtgatttgaagaacctatgtgtagctgcagcgtacaggccagtt 1126 |||||||| || || || ||| ||||||| ||||| | ||||| ||||||||||| ||| Sbjct: 1657 gaaggttattccggtagcgatctgaagaatctatgcattgctgctgcgtacaggcctgtt 1716 Query: 1127 catgaactgctagaagaagaa 1147 || |||||| || |||||||| Sbjct: 1717 caagaactgttacaagaagaa 1737 Score = 42.1 bits (21), Expect = 6.6 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1259 atgaacgagctaagaaaatggaacgaacagtacggcgaaggcggcagca 1307 ||||| ||||| |||||||||||||| || || || ||||| ||||||| Sbjct: 1849 atgaatgagctgagaaaatggaacgagcaatatggtgaaggaggcagca 1897
>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 91720 Score = 73.8 bits (37), Expect = 2e-09 Identities = 103/125 (82%) Strand = Plus / Plus Query: 812 gaagcaacgagaaggatgcgcaatgaatttatggcagcttgggatggtctaaggtccaaa 871 ||||| || ||||| ||| | ||||| || |||||||||||||| || || ||||| ||| Sbjct: 5235 gaagctaccagaagaatgagaaatgagttcatggcagcttgggacgggctcaggtcaaaa 5294 Query: 872 gatagtcaaaggatccttattcttggtgcaacaaatcgtctgttcgatctagatgacgct 931 || || ||||||||||| ||||||||||| || || |||| || ||||| ||||| ||| Sbjct: 5295 gacagccaaaggatcctcattcttggtgccaccaaccgtccctttgatcttgatgatgct 5354 Query: 932 gtcat 936 ||||| Sbjct: 5355 gtcat 5359 Score = 44.1 bits (22), Expect = 1.7 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1106 gctgcagcgtacaggccagttcatgaactgctagaagaagaa 1147 ||||| ||||||||||| ||||| |||||| || |||||||| Sbjct: 5711 gctgctgcgtacaggcctgttcaagaactgttacaagaagaa 5752 Score = 42.1 bits (21), Expect = 6.6 Identities = 42/49 (85%) Strand = Plus / Plus Query: 1259 atgaacgagctaagaaaatggaacgaacagtacggcgaaggcggcagca 1307 ||||| ||||| |||||||||||||| || || || ||||| ||||||| Sbjct: 6085 atgaatgagctgagaaaatggaacgagcaatatggtgaaggaggcagca 6133
>dbj|AP000417.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12 Length = 73977 Score = 71.9 bits (36), Expect = 7e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 833 aatgaatttatggcagcttgggatggtctaaggtccaaagatagtcaaaggatccttatt 892 ||||| |||||||||||||||||||| || || || |||||||| |||||||| || ||| Sbjct: 63555 aatgagtttatggcagcttgggatggactcagatcaaaagatagccaaaggattctcatt 63496 Query: 893 cttggtgcaacaaatcgtctgttcgatctagatgacgctgtcat 936 || ||||| || || || | || ||||| |||||||||||||| Sbjct: 63495 ctcggtgccaccaaccgaccttttgatcttgatgacgctgtcat 63452
>emb|CT986058.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 835 Score = 69.9 bits (35), Expect = 3e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 1073 tactctgggagtgatttgaagaacctatgtgtagctgcagcgtacaggccagttcatgaa 1132 ||||||||||||||||| |||||||| ||| | ||||| || || ||||| || || ||| Sbjct: 232 tactctgggagtgatttaaagaacctttgtattgctgctgcctataggcctgtccaagaa 291 Query: 1133 ctgctagaagaagaaaagaaggg 1155 || ||||| |||||||||||||| Sbjct: 292 cttctagaggaagaaaagaaggg 314 Score = 60.0 bits (30), Expect = 3e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 1254 cgagcatgaacgagctaagaaaatggaacgaacagtacggcgaagg 1299 |||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 410 cgagcatgaacgagctcagaaagtggaatgaacagtacggagaagg 455
>gb|AY112377.1| Zea mays CL24781_1 mRNA sequence Length = 720 Score = 63.9 bits (32), Expect = 2e-06 Identities = 41/44 (93%) Strand = Plus / Minus Query: 1091 aagaacctatgtgtagctgcagcgtacaggccagttcatgaact 1134 ||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 693 aagaacctatgtgtagctgcagcatataggccagtccatgaact 650 Score = 46.1 bits (23), Expect = 0.42 Identities = 89/111 (80%) Strand = Plus / Minus Query: 1197 tggatgactttgtccaagcgaaagccaaggtgagcccgtccgttgctttcgacgccacga 1256 ||||||| ||| ||||||| ||||| ||||| ||| |||| ||| ||| || || || | Sbjct: 587 tggatgattttatccaagcaaaagctaaggttagctcgtctgtttcttatgatgcaacaa 528 Query: 1257 gcatgaacgagctaagaaaatggaacgaacagtacggcgaaggcggcagca 1307 | ||||| || | |||||||||||||| ||||| || ||||| ||||||| Sbjct: 527 gtatgaatgaattgagaaaatggaacgagcagtatggggaaggtggcagca 477
>ref|XM_001081230.1| PREDICTED: Rattus norvegicus procollagen, type 1, alpha 1 (Col1a1), mRNA Length = 5862 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 607 cttgtgtgaattttcttttcctga 630 |||||||||||||||||||||||| Sbjct: 5507 cttgtgtgaattttcttttcctga 5530
>ref|XM_213440.4| PREDICTED: Rattus norvegicus procollagen, type 1, alpha 1 (Col1a1), mRNA Length = 5862 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 607 cttgtgtgaattttcttttcctga 630 |||||||||||||||||||||||| Sbjct: 5507 cttgtgtgaattttcttttcctga 5530
>emb|Z78279.1|RNCA1T1 R.norvegicus mRNA for collagen alpha1 type I Length = 5721 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 607 cttgtgtgaattttcttttcctga 630 |||||||||||||||||||||||| Sbjct: 5363 cttgtgtgaattttcttttcctga 5386
>gb|AC185362.2| Populus trichocarpa clone Pop1-56N11, complete sequence Length = 101630 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1138 agaagaagaaaagaaggggtctg 1160 ||||||||||||||||||||||| Sbjct: 74447 agaagaagaaaagaaggggtctg 74469
>ref|XR_012775.1| PREDICTED: Macaca mulatta similar to pleckstrin homology domain containing, family G, member 3 (LOC708025), mRNA Length = 8561 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 583 gaagccaaatatcgaagctcatctctt 609 ||||||||||||||||||||| ||||| Sbjct: 4070 gaagccaaatatcgaagctcacctctt 4096
>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135, complete sequence Length = 96988 Score = 46.1 bits (23), Expect = 0.42 Identities = 68/83 (81%) Strand = Plus / Minus Query: 686 tggtttggagacgctgagaagctcaccaaagcccttttctcgtttgcaagtcggctagct 745 ||||||||||| ||||| || | |||||||| |||||||| ||||| || ||| ||| Sbjct: 69279 tggtttggagatgctgaaaaattaaccaaagcacttttctcatttgccagcaagcttgct 69220 Query: 746 cctgttatcatatttgtggatga 768 ||||| || |||||||| ||||| Sbjct: 69219 cctgtcattatatttgttgatga 69197
>gb|AC189237.1| Brassica rapa subsp. pekinensis clone KBrB014O06, complete sequence Length = 105067 Score = 44.1 bits (22), Expect = 1.7 Identities = 37/42 (88%) Strand = Plus / Plus Query: 746 cctgttatcatatttgtggatgaggttgacagcttacttggt 787 |||| |||||| ||| | ||||||||||||||||| |||||| Sbjct: 87838 cctgctatcatttttatcgatgaggttgacagctttcttggt 87879
>emb|BX936392.23| Zebrafish DNA sequence from clone CH211-197O16 in linkage group 10, complete sequence Length = 180785 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 553 ctgttctgtctgctgctgcttt 574 |||||||||||||||||||||| Sbjct: 175882 ctgttctgtctgctgctgcttt 175861
>emb|CR847788.7| Zebrafish DNA sequence from clone CH211-249H16 in linkage group 10, complete sequence Length = 176964 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 553 ctgttctgtctgctgctgcttt 574 |||||||||||||||||||||| Sbjct: 132885 ctgttctgtctgctgctgcttt 132864
>ref|NM_199530.1| Danio rerio sec31p homolog (yeast) (sec31p), mRNA gb|BC054909.1| Danio rerio sec31p homolog (yeast), mRNA (cDNA clone MGC:63547 IMAGE:3816412), complete cds Length = 4443 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 553 ctgttctgtctgctgctgcttt 574 |||||||||||||||||||||| Sbjct: 1131 ctgttctgtctgctgctgcttt 1152
>gb|AC122355.4| Mus musculus BAC clone RP23-401L7 from chromosome 14, complete sequence Length = 198831 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 616 attttcttttcctgaaatgcat 637 |||||||||||||||||||||| Sbjct: 171172 attttcttttcctgaaatgcat 171193
>gb|AC124454.4| Mus musculus BAC clone RP24-228I9 from chromosome 14, complete sequence Length = 155657 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 616 attttcttttcctgaaatgcat 637 |||||||||||||||||||||| Sbjct: 7561 attttcttttcctgaaatgcat 7582
>emb|CR352251.11| Zebrafish DNA sequence from clone CH211-138M21 in linkage group 10, complete sequence Length = 175847 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 553 ctgttctgtctgctgctgcttt 574 |||||||||||||||||||||| Sbjct: 141221 ctgttctgtctgctgctgcttt 141200
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 aaatggtatatgttttcttcaa 91 |||||||||||||||||||||| Sbjct: 35371533 aaatggtatatgttttcttcaa 35371554
>ref|XM_696951.1| PREDICTED: Danio rerio hypothetical protein LOC555087 (LOC555087), mRNA Length = 2188 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 553 ctgttctgtctgctgctgcttt 574 |||||||||||||||||||||| Sbjct: 1130 ctgttctgtctgctgctgcttt 1151
>emb|BX321865.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 10/10 Length = 66094 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 550 tcactgttctgtctgctgctgc 571 |||||||||||||||||||||| Sbjct: 65817 tcactgttctgtctgctgctgc 65796
>emb|BX957309.6| Zebrafish DNA sequence from clone CH211-113P19 in linkage group 13, complete sequence Length = 169630 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 ttgttgcatctctgttctgctc 293 |||||||||||||||||||||| Sbjct: 94523 ttgttgcatctctgttctgctc 94544
>emb|AL929219.16| Mouse DNA sequence from clone RP23-53I18 on chromosome 2, complete sequence Length = 164107 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 gacaaatggtatatgttttctt 88 |||||||||||||||||||||| Sbjct: 161127 gacaaatggtatatgttttctt 161148
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 aaatggtatatgttttcttcaa 91 |||||||||||||||||||||| Sbjct: 167377 aaatggtatatgttttcttcaa 167398
>gb|AC122878.4| Mus musculus BAC clone RP23-116F15 from chromosome 14, complete sequence Length = 226611 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 639 cattatttcacaactttaatt 659 ||||||||||||||||||||| Sbjct: 114510 cattatttcacaactttaatt 114530
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 cctgctttgttgcatctctgt 286 ||||||||||||||||||||| Sbjct: 28081 cctgctttgttgcatctctgt 28061
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 caaaattgacaggtttttgcg 148 ||||||||||||||||||||| Sbjct: 3366225 caaaattgacaggtttttgcg 3366245
>gb|AC053527.8| Homo sapiens BAC clone RP11-692D12 from 4, complete sequence Length = 233250 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 985 taggatgaaaattctcaagatttta 1009 ||||||||||||||| ||||||||| Sbjct: 145146 taggatgaaaattcttaagatttta 145122
>emb|AL136441.16| Human DNA sequence from clone RP11-19D22 on chromosome 13q22.1-22.3 Contains a CpG island, complete sequence Length = 180992 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 982 gaataggatgaaaattctcaagatt 1006 ||||||||||||||||| ||||||| Sbjct: 52701 gaataggatgaaaattcacaagatt 52725
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 ctgtctgctgctgctttacat 578 ||||||||||||||||||||| Sbjct: 46427 ctgtctgctgctgctttacat 46407
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 ctgtctgctgctgctttacat 578 ||||||||||||||||||||| Sbjct: 129733 ctgtctgctgctgctttacat 129713
>gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, complete sequence Length = 170303 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acacatgagaaatcactgatg 117 ||||||||||||||||||||| Sbjct: 88364 acacatgagaaatcactgatg 88384
>gb|AC144430.14| Medicago truncatula clone mth2-16j2, complete sequence Length = 125368 Score = 42.1 bits (21), Expect = 6.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 636 atccattatttcacaactttaattcactaccat 668 |||||||||| ||||||||||||| | |||||| Sbjct: 95847 atccattattgcacaactttaatttaataccat 95815
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1289 tacggcgaaggcggcagcatg 1309 ||||||||||||||||||||| Sbjct: 824684 tacggcgaaggcggcagcatg 824704
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 caaaattgacaggtttttgcg 148 ||||||||||||||||||||| Sbjct: 45278 caaaattgacaggtttttgcg 45298
>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete sequence Length = 202412 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 659 tcactaccatcatttttctgt 679 ||||||||||||||||||||| Sbjct: 68357 tcactaccatcatttttctgt 68337 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 312,372,879 Number of extensions: 16940082 Number of successful extensions: 337533 Number of sequences better than 10.0: 56 Number of HSP's gapped: 337526 Number of HSP's successfully gapped: 85 Length of query: 1723 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1700 Effective length of database: 18,503,978,556 Effective search space: 31456763545200 Effective search space used: 31456763545200 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)