ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf52a03 |
|---|---|
| Clone Library Name | barley_pub |
>Q9ERS2:NDUAD_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 - Mus| musculus (Mouse) Length = 144 Score = 116 bits (290), Expect = 1e-25 Identities = 53/117 (45%), Positives = 81/117 (69%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PPPGG+ P+ Y R +P +G S ++F GA +G +++ + N+ RR L E + A Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDLEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A++P+ QAE+D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+PP GE+ Sbjct: 68 RIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124
>Q95KV7:NDUAD_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 - Bos| taurus (Bovine) Length = 144 Score = 115 bits (289), Expect = 2e-25 Identities = 53/117 (45%), Positives = 80/117 (68%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PP GG+ P+ Y R +P +G S ++F GA +G + + + N+ RR L+ E A Sbjct: 8 QDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDFEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A++P+LQAE+D R ++ ++ LEEEA +MK+VPGWKVGESV+++ +W+ P GEL Sbjct: 68 RIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124
>Q0MQ90:NDUAD_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 - Pan| troglodytes (Chimpanzee) Length = 144 Score = 115 bits (288), Expect = 2e-25 Identities = 54/117 (46%), Positives = 78/117 (66%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PPPGG+ P+ Y R +P +G S ++ G +G + + + N+ RR L+ E A Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A+LP+LQAE D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+PP GEL Sbjct: 68 RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>Q9P0J0:NDUAD_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 -| Homo sapiens (Human) Length = 144 Score = 115 bits (288), Expect = 2e-25 Identities = 54/117 (46%), Positives = 78/117 (66%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PPPGG+ P+ Y R +P +G S ++ G +G + + + N+ RR L+ E A Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A+LP+LQAE D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+PP GEL Sbjct: 68 RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>Q0MQ89:NDUAD_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 -| Gorilla gorilla gorilla (Lowland gorilla) Length = 144 Score = 115 bits (288), Expect = 2e-25 Identities = 54/117 (46%), Positives = 78/117 (66%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PPPGG+ P+ Y R +P +G S ++ G +G + + + N+ RR L+ E A Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A+LP+LQAE D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+PP GEL Sbjct: 68 RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>Q4R6H1:NDUAD_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 -| Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 163 Score = 114 bits (285), Expect = 5e-25 Identities = 54/126 (42%), Positives = 82/126 (65%) Frame = +2 Query: 230 ASVKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRR 409 AS++ + QD PPPGG+ P+ Y R +P +G S ++ G +G + + + N+ RR Sbjct: 18 ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR 77 Query: 410 ALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMP 589 L+ E AR A++P+ QAE D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+P Sbjct: 78 RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVP 137 Query: 590 PATGEL 607 P GEL Sbjct: 138 PLIGEL 143
>Q0MQ88:NDUAD_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 -| Pongo pygmaeus (Orangutan) Length = 144 Score = 111 bits (278), Expect = 3e-24 Identities = 53/117 (45%), Positives = 77/117 (65%) Frame = +2 Query: 257 QDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAA 436 QD PPPGG+ P+ Y R +P +G S ++ G +G + + + N+ RR L+ E A Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDFEA 67 Query: 437 RSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKVGESVYNSGKWMPPATGEL 607 R A+LP+LQAE D R ++ ++ LEEEA IMK+VP WKVGESV+++ +W+ P GEL Sbjct: 68 RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124
>Q66JT1:LRC8E_MOUSE Leucine-rich repeat-containing protein 8E - Mus musculus (Mouse)| Length = 795 Score = 34.3 bits (77), Expect = 0.69 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Frame = +2 Query: 317 KGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERF---- 484 KGP++ +TT G +VG+G K + ++ EK+ + ++ +L +E E+ Sbjct: 175 KGPASGRAMVTTVTTTGAGSGKVGEGEKEKVLIEPEKVVSEPPVVTLLDKKEGEQAKALF 234 Query: 485 --VKEWKKYLEE 514 VK+++ ++EE Sbjct: 235 EKVKKFRVHVEE 246
>Q9JXS9:PPK_NEIMB Polyphosphate kinase - Neisseria meningitidis serogroup B| Length = 685 Score = 33.9 bits (76), Expect = 0.90 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = +2 Query: 236 VKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRAL 415 V+ P+L P F PV R + P+ +A+ +T +Y+ G +++ RAL Sbjct: 336 VRQSPILLHHPYQS-FDPVVEMMREAAADPAVLAVKMT--------IYRTGTRSELVRAL 386 Query: 416 KEEKIAARSA-ILPMLQAEEDERFVKEWKKYLEEE-ARIMKNVPGWKV 553 + +A + ++ L A DE W K LEE A ++ V G+KV Sbjct: 387 MKAALAGKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKV 434
>Q9JW42:PPK_NEIMA Polyphosphate kinase - Neisseria meningitidis serogroup A| Length = 685 Score = 33.5 bits (75), Expect = 1.2 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Frame = +2 Query: 236 VKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRAL 415 V+ P+L P F PV R + P +A+ +T +Y+ G +++ RAL Sbjct: 336 VRQSPILLHHPYQS-FDPVVEMMREAAADPDVLAVKMT--------IYRTGTRSELVRAL 386 Query: 416 KEEKIAARSA-ILPMLQAEEDERFVKEWKKYLEEE-ARIMKNVPGWKV 553 + +A + ++ L A DE W K LEE A ++ V G+KV Sbjct: 387 MKAALAGKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKV 434
>Q3KRC6:LRC8E_RAT Leucine-rich repeat-containing protein 8E - Rattus norvegicus (Rat)| Length = 795 Score = 33.5 bits (75), Expect = 1.2 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = +2 Query: 317 KGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERF---- 484 KGP+A +TT G +VG+G K + ++ EK+ + +L +E E+ Sbjct: 175 KGPAAGRATVTTVTTVGTGTGKVGEGEKEKVLIEPEKVVTEPPAVTLLDKKEGEQAKALF 234 Query: 485 --VKEWKKYLEE 514 VK+++ ++EE Sbjct: 235 EKVKKFRVHVEE 246
>Q9GKU5:HDA11_MACFA Histone deacetylase 11 - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 347 Score = 32.3 bits (72), Expect = 2.6 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +2 Query: 344 LTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEE 514 +T G + G+ KV LKEEK+ + S ++ +A E++ V ++YL E Sbjct: 26 ITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 82
>Q96DB2:HDA11_HUMAN Histone deacetylase 11 - Homo sapiens (Human)| Length = 347 Score = 32.3 bits (72), Expect = 2.6 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +2 Query: 344 LTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEE 514 +T G + G+ KV LKEEK+ + S ++ +A E++ V ++YL E Sbjct: 26 ITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNE 82
>P97608:OPLA_RAT 5-oxoprolinase - Rattus norvegicus (Rat)| Length = 1288 Score = 31.6 bits (70), Expect = 4.5 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 681 IP*RHGAILDGLKQQV------LEPYQTSGRSSPVAGGIHFPELYTLSPTFHPGTFFMIL 520 IP GA+ + ++ Q+ L P + P AGG H P+L ++P F PG + Sbjct: 789 IPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVF 848 Query: 519 ASSSR 505 +SR Sbjct: 849 YVASR 853
>Q8K010:OPLA_MOUSE 5-oxoprolinase - Mus musculus (Mouse)| Length = 1288 Score = 31.6 bits (70), Expect = 4.5 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 681 IP*RHGAILDGLKQQV------LEPYQTSGRSSPVAGGIHFPELYTLSPTFHPGTFFMIL 520 IP GA+ + ++ Q+ L P + P AGG H P+L ++P F PG + Sbjct: 789 IPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQSRPVF 848 Query: 519 ASSSR 505 +SR Sbjct: 849 YVASR 853
>O14841:OPLA_HUMAN 5-oxoprolinase - Homo sapiens (Human)| Length = 1288 Score = 31.6 bits (70), Expect = 4.5 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 681 IP*RHGAILDGLKQQV------LEPYQTSGRSSPVAGGIHFPELYTLSPTFHPGTFFMIL 520 IP GA+ + ++ Q+ L P + P AGG H P+L ++P F PG + Sbjct: 789 IPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVF 848 Query: 519 ASSSR 505 +SR Sbjct: 849 YVASR 853
>Q75WB5:OPLA_BOVIN 5-oxoprolinase - Bos taurus (Bovine)| Length = 1288 Score = 31.6 bits (70), Expect = 4.5 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 681 IP*RHGAILDGLKQQV------LEPYQTSGRSSPVAGGIHFPELYTLSPTFHPGTFFMIL 520 IP GA+ + ++ Q+ L P + P AGG H P+L ++P F PG + Sbjct: 789 IPVHLGAMQETVQFQIQQLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQTRPVF 848 Query: 519 ASSSR 505 +SR Sbjct: 849 YVASR 853
>Q03973:HMO1_YEAST High mobility group protein 1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 246 Score = 31.6 bits (70), Expect = 4.5 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Frame = +2 Query: 284 APVRYARRIPSKGPSAIALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQ 463 APV+ RR + P+A LT F A+S VR+ L+E++ ++ + P+ Sbjct: 90 APVKAVRRKIERDPNAPKKPLTVFFAYS---------AYVRQELREDR--QKAGLPPLSS 138 Query: 464 AEEDERFVKEWKKYLEEEARIMK-----NVPGWKVGESVYNSGK---WMPPATGELRP 613 E + K+WK+ + E K + ++ +S Y K +PPA+ E P Sbjct: 139 TEITQEISKKWKELSDNEKEKWKQAYNVELENYQREKSKYLEAKKNGTLPPASLENGP 196
>Q02367:NDUB6_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 - Bos| taurus (Bovine) Length = 128 Score = 31.2 bits (69), Expect = 5.9 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +2 Query: 404 RRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNV 538 RR LK+++++ R +LP + ERF W K+L++ A + KNV Sbjct: 20 RRWLKDQELSPREPVLPPQRVSPVERF---WNKFLQDGA-LWKNV 60
>P54044:RL18_METJA 50S ribosomal protein L18P - Methanococcus jannaschii| Length = 195 Score = 30.8 bits (68), Expect = 7.6 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +2 Query: 335 ALFLTTFGAFSWGMYQVGQGNKVRRALKEEKIAAR--SAILPMLQAEEDERFVKEWKKYL 508 A+F GA GM ++ G ++ + EE+I A ML+ +++ER+ K++ KYL Sbjct: 115 AIFAILKGALDAGM-EIPHGEEILPS--EERIRGEHIKAYAEMLKEQDEERYKKQFSKYL 171 Query: 509 EE 514 E+ Sbjct: 172 EK 173
>O43251:RBM9_HUMAN RNA-binding protein 9 - Homo sapiens (Human)| Length = 390 Score = 30.8 bits (68), Expect = 7.6 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 13/51 (25%) Frame = -3 Query: 669 HGAILDGLKQQV-------------LEPYQTSGRSSPVAGGIHFPELYTLS 556 HG +++G K +V + PY + SPV G ++ PELY S Sbjct: 181 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 231
>Q91WA3:HDA11_MOUSE Histone deacetylase 11 - Mus musculus (Mouse)| Length = 347 Score = 30.8 bits (68), Expect = 7.6 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 344 LTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEE 514 +T G + G+ KV LKEEK+ + ++ +A E++ V ++YL E Sbjct: 26 ITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEAREASEEDLLVVHTRRYLNE 82
>Q33884:CCF2_ARATH Putative cytochrome c biogenesis ccmF C-terminal-like mitochondrial| protein 3 - Arabidopsis thaliana (Mouse-ear cress) Length = 203 Score = 30.8 bits (68), Expect = 7.6 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +2 Query: 341 FLTTFGAFSWGMYQVGQGNKVRRALKEEKIAARSAILPML-QAEEDERFVKEWK 499 FL G F YQ+ Q VRR K+E + ARS ++ + A R V WK Sbjct: 149 FLLMTGIFMILFYQMKQQASVRRTYKKEMVVARSTLVHLRHSARAQPRPVMLWK 202
>P29846:POLG_HCVTW Genome polyprotein [Contains: Core protein p21 - Hepatitis C virus| genotype 1b (isolate Taiwan) (HCV) Length = 3010 Score = 27.3 bits (59), Expect(2) = 9.1 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = +2 Query: 374 MYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGW 547 +++ G + R E K+ + P L+AEEDER V + L + + +P W Sbjct: 2232 LWRQEMGGNITRVESENKVVILDSFDP-LRAEEDEREVSVPAEILRKSRKFPPALPVW 2288 Score = 21.6 bits (44), Expect(2) = 9.1 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = +3 Query: 582 GCPLPPV 602 GCPLPPV Sbjct: 2313 GCPLPPV 2319 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 155,047,804 Number of extensions: 3514733 Number of successful extensions: 10093 Number of sequences better than 10.0: 24 Number of HSP's gapped: 10080 Number of HSP's successfully gapped: 25 Length of query: 296 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 184 Effective length of database: 69,965,399 Effective search space: 12873633416 Effective search space used: 12873633416 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
