ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51p17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g13970:12002.t01193:unspliced-genomic UOS1, putative... 118 2e-26
2LOC_Os07g42410:12007.t03893:unspliced-genomic expressed protein 32 2.2
3LOC_Os05g50350:12005.t04467:unspliced-genomic DNA binding pr... 31 4.2
4LOC_Os05g14010:12005.t01177:unspliced-genomic expressed protein 31 4.2
5LOC_Os02g32550:12002.t02898:unspliced-genomic expressed protein 31 4.2
6LOC_Os11g36060:12011.t03154:unspliced-genomic THUMP domain c... 30 8.0
7LOC_Os03g26044:12003.t02298:unspliced-genomic CSLA5 - cellul... 30 8.0
8LOC_Os11g06930:12011.t00585:unspliced-genomic CBS domain con... 24 9.3

>LOC_Os02g13970:12002.t01193:unspliced-genomic UOS1, putative, expressed|
          Length = 5356
 Score =  118 bits (253), Expect = 2e-26
 Identities = 50/57 (87%), Positives = 52/57 (91%)
 Frame = +2 / +1

                                                                     
Query: 20   VKSTVPFSEPFVIDPSNPPPEKDYEVYFKELKDGITGKEALEGTPALV*RLRRMQNA 190
            VKSTVPFSEPFV+DPSNPPPEKDY+VYFKELK GITGKEALEGTPA V*R   MQNA
Sbjct: 4612 VKSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV*RTC*MQNA 4782



 Score = 54.7 bits (113), Expect(2) = 2e-12
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -3 / -3

                                            
Query: 189  AFCIRRNRQTRAGVPSRASLPVMPSLSSLKYT 94
            AFCI    QT AGVPS ASLPVMP+LSSLKYT
Sbjct: 4781 AFCI*HVLQT*AGVPSSASLPVMPALSSLKYT 4686



 Score = 36.3 bits (73), Expect(2) = 2e-12
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -2 / -2

                                
Query: 76   RWV*RIDHKRFTKWNGTLDL 17
            R +*RI+H+RFT+WN  LDL
Sbjct: 4668 RRI*RINHERFTEWNSALDL 4609



 Score = 63.4 bits (132), Expect = 9e-10
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = -1 / -1

                                                                        
Query: 191  GHSAFDVIVRLEQVFLQGPLYP*CRL*AP*STLRSPSQEVGLKDRSQTVH*MERYS*PQK 12
            G SAF++  R EQVFL  PLY  C+L*A *+T  S S E  LKD+ + VH*ME+ S*P K
Sbjct: 4783 GRSAFNMFFRPEQVFLLVPLYLLCQL*AL*NTHHSLSLEEDLKDQPRKVH*MEQCS*PNK 4604



 Score = 37.3 bits (75), Expect = 0.068
 Identities = 26/58 (44%), Positives = 28/58 (48%)
 Frame = +1 / +3

                                                                      
Query: 19   GQEYRSI**TVCDRSFKPTS*EGLRSVLQGAQXXXXXXXXXXXNTCSSLTITSNAECP 192
            GQE+ SI *T    SFK +S E L  V Q AQ           NTCS L    NAE P
Sbjct: 4611 GQEHCSIQ*TFRG*SFKSSSRERL*CVFQRAQSWHNR*RGTRRNTCSGLKNMLNAERP 4784



 Score = 33.1 bits (66), Expect = 1.2
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3 / +2

                                  
Query: 129  VKRPLKEHLL*SDDYVECRMPS 194
            VKR  KEHLL S+++V+CR P+
Sbjct: 4721 VKRH*KEHLLRSEEHVKCRTPN 4786



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>LOC_Os07g42410:12007.t03893:unspliced-genomic expressed protein|
          Length = 7850

 Score = 32.2 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1 / +2

                                               
Query: 452  FFLHTISPLLFRYPLLQRTKH*HYCSEYQTVPLLT 348
            FF+HT     F YP+   T   H+ S  QT  L+T
Sbjct: 3179 FFVHT*QLFFFGYPVKHATNSCHFASGVQTSVLIT 3283



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>LOC_Os05g50350:12005.t04467:unspliced-genomic DNA binding protein, putative|
          Length = 1852

 Score = 31.3 bits (62), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2 / -3

                                   
Query: 415  IHCYKEQNISIIVQNIRQYHY*H 347
            IHC K  +ISI + N + YHY H
Sbjct: 1163 IHCSKRLSISIYLINNKAYHYCH 1095



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>LOC_Os05g14010:12005.t01177:unspliced-genomic expressed protein|
          Length = 7704

 Score = 31.3 bits (62), Expect = 4.2
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1 / +3

                              
Query: 461 FFFFFLHTISPLLFRYPLL 405
           FFFFF  +ISPLLF   LL
Sbjct: 15  FFFFFFFSISPLLFLSSLL 71



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>LOC_Os02g32550:12002.t02898:unspliced-genomic expressed protein|
          Length = 1825

 Score = 31.3 bits (62), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2 / -3

                                                    
Query: 35  PFSEPFVIDPSNPPPEKDYEVYFKELKDGITGKEALEGTPA 157
           P     V+DP  PPP  D +   +++  G  G E +E + A
Sbjct: 188 PLDTSPVLDPPPPPPHDDTDEQAEQISGGRRGGEQVESSAA 66



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>LOC_Os11g36060:12011.t03154:unspliced-genomic THUMP domain containing protein, expressed|
          Length = 9667

 Score = 30.4 bits (60), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1 / -1

                                    
Query: 386  HYCSEYQTVPLLTP*RLKLHVSVH 315
            HYC E+QTV +  P R  LHV+++
Sbjct: 3652 HYCFEFQTVYV*FPVRKVLHVNLY 3581



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>LOC_Os03g26044:12003.t02298:unspliced-genomic CSLA5 - cellulose synthase-like family A; mannan synthase, expressed|
          Length = 5199

 Score = 30.4 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3 / +2

                                  
Query: 192  SASRNPDRVIIYSLNLNSQEIC 257
            +A RNP+ V+ Y+L  NSQ +C
Sbjct: 3179 TAIRNPESVLSYNLCYNSQTVC 3244



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>LOC_Os11g06930:12011.t00585:unspliced-genomic CBS domain containing protein, expressed|
          Length = 5476

 Score = 24.0 bits (46), Expect(2) = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3 / -3

                                               
Query: 417  ISIATKNKTLALLFRISDSTTIDTVETQTTCFSPH 313
            +++  +NK    L + + S T + + T TTC S H
Sbjct: 3956 LNLQRRNKPNC*LEQYNHSLTFNQLVTPTTCKSMH 3852



 Score = 23.1 bits (44), Expect(2) = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2 / -1

                         
Query: 457  FFFFCIQSPLSYL 419
            FFFFC Q+   Y+
Sbjct: 4093 FFFFCFQTLTKYI 4055


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 160,010,036
Number of extensions: 2251036
Number of successful extensions: 6007
Number of sequences better than 10.0: 8
Length of query: 153
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 106
Effective length of database: 52,968,820
Effective search space: 5614694920
Effective search space used: 5614694920
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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