ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51p17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001052916.1| Oryza sativa (japonica cultivar-group) Os02g0234500 (Os02g0234500) mRNA, complete cds Length = 2279 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 14 tttgaggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaaccca 73 |||||||||||||| || |||||||| |||||||| || ||| | ||||||||||| || Sbjct: 1719 tttgaggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcct 1778 Query: 74 cctcctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaa 133 ||||| ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||| Sbjct: 1779 cctccagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaa 1838 Query: 134 gaggcccttgaaggaacacctgctc 158 ||||| || |||||||||||||||| Sbjct: 1839 gaggcactagaaggaacacctgctc 1863
>dbj|AK071487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099F01, full insert sequence Length = 2191 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 14 tttgaggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaaccca 73 |||||||||||||| || |||||||| |||||||| || ||| | ||||||||||| || Sbjct: 1525 tttgaggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcct 1584 Query: 74 cctcctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaa 133 ||||| ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||| Sbjct: 1585 cctccagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaa 1644 Query: 134 gaggcccttgaaggaacacctgctc 158 ||||| || |||||||||||||||| Sbjct: 1645 gaggcactagaaggaacacctgctc 1669
>dbj|AK068001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128H21, full insert sequence Length = 2281 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 14 tttgaggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaaccca 73 |||||||||||||| || |||||||| |||||||| || ||| | ||||||||||| || Sbjct: 1720 tttgaggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcct 1779 Query: 74 cctcctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaa 133 ||||| ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||| Sbjct: 1780 cctccagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaa 1839 Query: 134 gaggcccttgaaggaacacctgctc 158 ||||| || |||||||||||||||| Sbjct: 1840 gaggcactagaaggaacacctgctc 1864
>dbj|AK059065.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G09, full insert sequence Length = 1565 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 14 tttgaggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaaccca 73 |||||||||||||| || |||||||| |||||||| || ||| | ||||||||||| || Sbjct: 912 tttgaggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcct 971 Query: 74 cctcctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaa 133 ||||| ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||| Sbjct: 972 cctccagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaa 1031 Query: 134 gaggcccttgaaggaacacctgctc 158 ||||| || |||||||||||||||| Sbjct: 1032 gaggcactagaaggaacacctgctc 1056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 18 aggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaacccacctc 77 |||||||||| || |||||||| |||||||| || ||| | ||||||||||| || |||| Sbjct: 7625614 aggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcctcctc 7625673 Query: 78 ctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaagagg 137 | ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||||||| Sbjct: 7625674 cagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaagagg 7625733 Query: 138 cccttgaaggaacacctgctc 158 | || |||||||||||||||| Sbjct: 7625734 cactagaaggaacacctgctc 7625754
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 18 aggtcaagagtaccgttccatttagtgaaccgtttgtgatcgatccttcaaacccacctc 77 |||||||||| || |||||||| |||||||| || ||| | ||||||||||| || |||| Sbjct: 42374 aggtcaagagcactgttccattcagtgaacctttcgtggttgatccttcaaatcctcctc 42433 Query: 78 ctgagaaggactacgaagtgtacttcaaggagctcaaagacggcatcacgggtaaagagg 137 | ||||| ||||| || ||||| ||||| |||||||||| ||||| || |||||||||| Sbjct: 42434 cagagaaagactatgatgtgtatttcaaagagctcaaagctggcataacaggtaaagagg 42493 Query: 138 cccttgaaggaacacctgctc 158 | || |||||||||||||||| Sbjct: 42494 cactagaaggaacacctgctc 42514
>emb|CR450715.13| Zebrafish DNA sequence from clone CH211-157F15 in linkage group 6, complete sequence Length = 137471 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 accagcagtattattttaaat 314 ||||||||||||||||||||| Sbjct: 100901 accagcagtattattttaaat 100881
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 tgtgatcgatccttcaaaccc 72 ||||||||||||||||||||| Sbjct: 4618098 tgtgatcgatccttcaaaccc 4618118
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 tgtgatcgatccttcaaaccc 72 ||||||||||||||||||||| Sbjct: 58938 tgtgatcgatccttcaaaccc 58958
>gb|AC110291.7| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 117481 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tgttttgttctttgtagcaatgga 414 ||||||||| |||||||||||||| Sbjct: 79903 tgttttgttttttgtagcaatgga 79880
>ref|XM_001226627.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_08701) mRNA, complete cds Length = 822 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccttcaaacccacctcctga 81 |||||||||||||||||||| Sbjct: 779 ccttcaaacccacctcctga 760
>ref|NM_001077170.1| Danio rerio similar to nephrocystin (MGC152930), mRNA gb|BC124181.1| Danio rerio similar to nephrocystin, mRNA (cDNA clone MGC:152930 IMAGE:5412219), complete cds Length = 2243 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 91 ccgtttgtgatcgatccttc 110
>gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome Length = 3275944 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gaatgccctctgcttcgaga 203 |||||||||||||||||||| Sbjct: 2342751 gaatgccctctgcttcgaga 2342732
>gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tgatattctgaacaataatg 386 |||||||||||||||||||| Sbjct: 34163 tgatattctgaacaataatg 34144
>gb|AC003003.1|HUAC003003 Human Chromosome 16 BAC clone CIT987SK-254P9, complete sequence Length = 130381 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 386 gctaatgttttgttctttgtagcaatgg 413 |||||| ||||||| ||||||||||||| Sbjct: 117205 gctaattttttgttttttgtagcaatgg 117178
>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence Length = 200088 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cccttgaaggaacacctgct 157 |||||||||||||||||||| Sbjct: 171762 cccttgaaggaacacctgct 171743
>gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, complete sequence Length = 210708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ccagcagtattattttaaat 314 |||||||||||||||||||| Sbjct: 59742 ccagcagtattattttaaat 59723
>ref|NM_024645.1| Homo sapiens zinc finger, matrin type 4 (ZMAT4), mRNA dbj|AK023904.1| Homo sapiens cDNA FLJ13842 fis, clone THYRO1000793 Length = 2466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 aatgctaatgttttgttctt 402 |||||||||||||||||||| Sbjct: 877 aatgctaatgttttgttctt 858
>gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, complete sequence Length = 199472 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttttaaatgtggactgaaac 326 |||||||||||||||||||| Sbjct: 54549 ttttaaatgtggactgaaac 54568
>gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, complete sequence Length = 220579 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 386 gctaatgttttgttctttgtagcaatgg 413 |||||| ||||||| ||||||||||||| Sbjct: 14828 gctaattttttgttttttgtagcaatgg 14801
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tgttttgttctttgtagcaatgga 414 ||||||||| |||||||||||||| Sbjct: 12635 tgttttgttttttgtagcaatgga 12658
>gb|AC083804.13| Homo sapiens 3 BAC RP11-269P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106979 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 aacaataatgctaatgtttt 396 |||||||||||||||||||| Sbjct: 84210 aacaataatgctaatgtttt 84191
>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tgttttgttctttgtagcaa 410 |||||||||||||||||||| Sbjct: 215210 tgttttgttctttgtagcaa 215191
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 acaataatgctaatgttttg 397 |||||||||||||||||||| Sbjct: 1095715 acaataatgctaatgttttg 1095696
>ref|XM_703357.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 3 (LOC563049), mRNA Length = 2230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 102 ccgtttgtgatcgatccttc 121
>ref|XM_703356.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 2 (LOC563049), mRNA Length = 2257 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 102 ccgtttgtgatcgatccttc 121
>ref|XM_681461.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 1 (LOC563049), mRNA Length = 2245 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 102 ccgtttgtgatcgatccttc 121
>emb|AL035530.11|HS111C20 Human DNA sequence from clone RP1-111C20 on chromosome 6q25.3-27 Contains the gene for radial spoke protein 3 (RSP3), the TAGP gene for T-cell activation GTPase activating protein, a novel gene and a CpG island, complete sequence Length = 108460 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tattttaaatgtggactgaa 324 |||||||||||||||||||| Sbjct: 40661 tattttaaatgtggactgaa 40680
>gb|AC018796.4|AC018796 Homo sapiens chromosome 8, clone RP11-51K12, complete sequence Length = 148189 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 aatgctaatgttttgttctt 402 |||||||||||||||||||| Sbjct: 7793 aatgctaatgttttgttctt 7812
>emb|BX649523.10| Zebrafish DNA sequence from clone DKEY-69P10 in linkage group 17, complete sequence Length = 55445 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 15831 ccgtttgtgatcgatccttc 15812
>gb|BC019598.1| Homo sapiens zinc finger, matrin type 4, mRNA (cDNA clone MGC:24845 IMAGE:4934088), complete cds Length = 2241 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 aatgctaatgttttgttctt 402 |||||||||||||||||||| Sbjct: 635 aatgctaatgttttgttctt 616
>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1134_E08 Length = 153002 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 acaataatgctaatgttttg 397 |||||||||||||||||||| Sbjct: 133408 acaataatgctaatgttttg 133389
>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17, complete sequence Length = 193078 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgtttgtgatcgatccttc 66 |||||||||||||||||||| Sbjct: 39392 ccgtttgtgatcgatccttc 39373
>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence Length = 213862 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tgttttgttctttgtagcaa 410 |||||||||||||||||||| Sbjct: 140217 tgttttgttctttgtagcaa 140198
>gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence Length = 220633 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 386 gctaatgttttgttctttgtagcaatgg 413 |||||| ||||||| ||||||||||||| Sbjct: 14828 gctaattttttgttttttgtagcaatgg 14801
>gb|AC157510.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875J15, complete sequence Length = 41401 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gaacacctgctctagtctga 166 |||||||||||||||||||| Sbjct: 6475 gaacacctgctctagtctga 6494
>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178433 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 atattctgaacaataatgct 388 |||||||||||||||||||| Sbjct: 18769 atattctgaacaataatgct 18788
>gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, complete sequence Length = 175623 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttttaaatgtggactgaaac 326 |||||||||||||||||||| Sbjct: 85505 ttttaaatgtggactgaaac 85524
>gb|AC140238.3| Mus musculus BAC clone RP24-279O7 from 3, complete sequence Length = 174633 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cccttgaaggaacacctgct 157 |||||||||||||||||||| Sbjct: 123659 cccttgaaggaacacctgct 123678
>emb|AL831725.5| Mouse DNA sequence from clone RP23-106P7 on chromosome X, complete sequence Length = 174712 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 taatgttttgttctttgtag 407 |||||||||||||||||||| Sbjct: 21411 taatgttttgttctttgtag 21392
>emb|AL356022.3|CNS05TDC Human chromosome 14 DNA sequence BAC R-163M18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 137723 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 atattctgaacaataatgct 388 |||||||||||||||||||| Sbjct: 24774 atattctgaacaataatgct 24755 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 85,182,962 Number of extensions: 4494662 Number of successful extensions: 349661 Number of sequences better than 10.0: 41 Number of HSP's gapped: 349661 Number of HSP's successfully gapped: 41 Length of query: 461 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 439 Effective length of database: 18,508,616,841 Effective search space: 8125282793199 Effective search space used: 8125282793199 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)
