ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf54h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9D7I8:FA83D_MOUSE Protein FAM83D - Mus musculus (Mouse) 30 4.2
2Q9GL27:BRAC_CANFA Brachyury protein - Canis familiaris (Dog) 29 7.2
3Q8X092:ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 - Neuros... 29 7.2
4Q5A723:MON1_CANAL Vacuolar fusion protein MON1 - Candida albican... 28 9.4

>Q9D7I8:FA83D_MOUSE Protein FAM83D - Mus musculus (Mouse)|
          Length = 585
 Score = 29.6 bits (65), Expect = 4.2
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
 Frame = +2

Query: 140 GHPRSLPLFVAGGWIPLERAF----DHLAVFYNRRLIGRSCHLDD---------RPDDDG 280
           G P    LF     + LE+      D  A F  R  +GR  + D+         RP +DG
Sbjct: 20  GPPNPTELFSEARRLALEQLLAGGPDAWAAFLRRERLGRFLNADEVREVLGAAERPGEDG 79

Query: 281 *QQKEEWRGCHHHSRSGVPKQQQQEEEGPS 370
               E+  G  H   SG    +Q + E P+
Sbjct: 80  AAVAEDSFGSSHECSSGTYFPEQSDLEPPA 109



to top

>Q9GL27:BRAC_CANFA Brachyury protein - Canis familiaris (Dog)|
          Length = 435

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 97  STRHHQLFAAVRVRRPSAFAAPVRRRRMDSVGASF*SSC-CILQSPVNWPQLSS 255
           ST   + + A+R  RPS + +P   R      +   S+C  +LQS  +WP L +
Sbjct: 272 STHGCERYPALRNHRPSPYPSPYAHRNNSPTYSDNPSACLSMLQSHDSWPSLGT 325



to top

>Q8X092:ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 - Neurospora crassa|
          Length = 556

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 347 VVAWAHPICYDGGSLATLPFAAIHHHQVCHPDDSCGQLTGDCKIQQD 207
           +V + HP C  GG    + +AAI   Q   P   C   TGD  + ++
Sbjct: 101 IVGFFHPFCNAGGGGERVLWAAIRATQKRWPKAKCVVYTGDHDVSKE 147



to top

>Q5A723:MON1_CANAL Vacuolar fusion protein MON1 - Candida albicans (Yeast)|
          Length = 565

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 255 WMTDLMMMDSSKRKSGEAATIIADRVCPSNNNKRKKALLLSFCTLLLPDEMMLEVP 422
           W   ++M+ S  + S +A  + A+ +C   NNK++ A+ L    L +P  + +EVP
Sbjct: 396 WQDLVLMLISGSKNSFDALKLSANEICTKLNNKQELAVKL-INELSIP--LSIEVP 448


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 68,992,873
Number of extensions: 1393850
Number of successful extensions: 3549
Number of sequences better than 10.0: 4
Number of HSP's gapped: 3542
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 100,686,439
Length adjustment: 102
Effective length of query: 44
Effective length of database: 72,708,349
Effective search space: 3199167356
Effective search space used: 3199167356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top