| Clone Name | FLbaf54g14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK241087.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065074D06, full insert sequence Length = 655 Score = 230 bits (116), Expect = 4e-57 Identities = 179/200 (89%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 148 aagatgtatctccagtactacatcaacgagaagggggacaaggtgtacaccaccaagaag 207 Query: 143 gaatcccctctcggtgtgccgacgcagtctgcccacccagctcgtttctccccggatgac 202 ||||| ||||||||||| || ||||||||||| ||||||||||| ||||| || |||||| Sbjct: 208 gaatctcctctcggtgttcccacgcagtctgctcacccagctcgcttctctccagatgac 267 Query: 203 aagtacgcccgtcagcgttacctgttgaagaagaggtttggattgctgccaacccagcag 262 |||||| | || ||| | ||||||||||||||||| || || |||||||||||||| || Sbjct: 268 aagtactcacgccagagatacctgttgaagaagagattcgggttgctgccaacccaaaag 327 Query: 263 ccagcacaaaagtactgaag 282 ||||||| |||||||||||| Sbjct: 328 ccagcaccaaagtactgaag 347
>dbj|AK059024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B07, full insert sequence Length = 1462 Score = 230 bits (116), Expect = 4e-57 Identities = 179/200 (89%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1107 aagatgtatctccagtactacatcaacgagaagggggacaaggtgtacaccaccaagaag 1166 Query: 143 gaatcccctctcggtgtgccgacgcagtctgcccacccagctcgtttctccccggatgac 202 ||||| ||||||||||| || ||||||||||| ||||||||||| ||||| || |||||| Sbjct: 1167 gaatctcctctcggtgttcccacgcagtctgctcacccagctcgcttctctccagatgac 1226 Query: 203 aagtacgcccgtcagcgttacctgttgaagaagaggtttggattgctgccaacccagcag 262 |||||| | || ||| | ||||||||||||||||| || || |||||||||||||| || Sbjct: 1227 aagtactcacgccagagatacctgttgaagaagagattcgggttgctgccaacccaaaag 1286 Query: 263 ccagcacaaaagtactgaag 282 ||||||| |||||||||||| Sbjct: 1287 ccagcaccaaagtactgaag 1306
>gb|AY103703.1| Zea mays PCO150529 mRNA sequence Length = 595 Score = 212 bits (107), Expect = 9e-52 Identities = 179/203 (88%) Strand = Plus / Plus Query: 81 ccaagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaaga 140 ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| Sbjct: 132 ccaagatgtatctccagtattacatcaacgagaagggtgacaaggtctacaccaccaaga 191 Query: 141 aggaatcccctctcggtgtgccgacgcagtctgcccacccagctcgtttctccccggatg 200 |||| || ||||| || ||||||||||||||||| ||||||||||| ||||| || |||| Sbjct: 192 aggagtcgcctcttggggtgccgacgcagtctgctcacccagctcgcttctcaccagatg 251 Query: 201 acaagtacgcccgtcagcgttacctgttgaagaagaggtttggattgctgccaacccagc 260 |||||||| | || ||||| ||||||||||||||||| |||||| | |||||||| ||| Sbjct: 252 acaagtactctcgccagcggtacctgttgaagaagagatttggacttctgccaacgcaga 311 Query: 261 agccagcacaaaagtactgaagc 283 ||||||||| |||||||||||| Sbjct: 312 agccagcactgaagtactgaagc 334
>gb|BT016927.1| Zea mays clone E04912703A12.c mRNA sequence Length = 510 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Minus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 354 aagatgtatctccagtactacatcaacgagaagggggacaaggtctacaccaccaagaag 295 Query: 143 gaatcccctctcggtgtgccgacgcagtctgcccacccagctcgtttctccccggatgac 202 || || ||||| || ||||| ||||||||||| ||||||||||| ||||| || |||||| Sbjct: 294 gagtcacctcttggggtgccaacgcagtctgctcacccagctcggttctcaccagatgac 235 Query: 203 aagtacgcccgtcagcgttacctgttgaagaagaggtttggattgctgccaacccagcag 262 |||||| | || ||||| ||||||||||||||||| |||||| | |||||||| ||| | Sbjct: 234 aagtactctcgccagcgatacctgttgaagaagagatttggacttctgccaacgcagaat 175 Query: 263 ccagcacaaaagtactgaagc 283 |||| || |||||||||||| Sbjct: 174 ccaggaccgaagtactgaagc 154
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 93.7 bits (47), Expect = 6e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 180 cagctcgtttctccccggatgacaagtacgcccgtcagcgttacctgttgaagaagaggt 239 ||||||| ||||| || |||||||||||| | || ||| | ||||||||||||||||| | Sbjct: 24593226 cagctcgcttctctccagatgacaagtactcacgccagagatacctgttgaagaagagat 24593167 Query: 240 ttggattgctgccaacccagcagccagcacaaaagtactgaag 282 | || |||||||||||||| ||||||||| |||||||||||| Sbjct: 24593166 tcgggttgctgccaacccaaaagccagcaccaaagtactgaag 24593124 Score = 89.7 bits (45), Expect = 9e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaag 139 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24594469 aagatgtatctccagtactacatcaacgagaagggggacaaggtgtacaccaccaag 24594413 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 138 agaaggaatcccctctcggtgtgccgacgcagtctgcccacccag 182 |||||||||| ||||||||||| || ||||||||||| ||||||| Sbjct: 24594305 agaaggaatctcctctcggtgttcccacgcagtctgctcacccag 24594261 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 aacccagcagccagcacaaaa 273 ||||||||||||||||||||| Sbjct: 33814158 aacccagcagccagcacaaaa 33814138
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 93.7 bits (47), Expect = 6e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 180 cagctcgtttctccccggatgacaagtacgcccgtcagcgttacctgttgaagaagaggt 239 ||||||| ||||| || |||||||||||| | || ||| | ||||||||||||||||| | Sbjct: 107327 cagctcgcttctctccagatgacaagtactcacgccagagatacctgttgaagaagagat 107268 Query: 240 ttggattgctgccaacccagcagccagcacaaaagtactgaag 282 | || |||||||||||||| ||||||||| |||||||||||| Sbjct: 107267 tcgggttgctgccaacccaaaagccagcaccaaagtactgaag 107225 Score = 89.7 bits (45), Expect = 9e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaag 139 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 108570 aagatgtatctccagtactacatcaacgagaagggggacaaggtgtacaccaccaag 108514 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 138 agaaggaatcccctctcggtgtgccgacgcagtctgcccacccag 182 |||||||||| ||||||||||| || ||||||||||| ||||||| Sbjct: 108406 agaaggaatctcctctcggtgttcccacgcagtctgctcacccag 108362
>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C01 Length = 124548 Score = 93.7 bits (47), Expect = 6e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 180 cagctcgtttctccccggatgacaagtacgcccgtcagcgttacctgttgaagaagaggt 239 ||||||| ||||| || |||||||||||| | || ||| | ||||||||||||||||| | Sbjct: 37775 cagctcgcttctctccagatgacaagtactcacgccagagatacctgttgaagaagagat 37716 Query: 240 ttggattgctgccaacccagcagccagcacaaaagtactgaag 282 | || |||||||||||||| ||||||||| |||||||||||| Sbjct: 37715 tcgggttgctgccaacccaaaagccagcaccaaagtactgaag 37673 Score = 89.7 bits (45), Expect = 9e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaag 139 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 39018 aagatgtatctccagtactacatcaacgagaagggggacaaggtgtacaccaccaag 38962 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 138 agaaggaatcccctctcggtgtgccgacgcagtctgcccacccag 182 |||||||||| ||||||||||| || ||||||||||| ||||||| Sbjct: 38854 agaaggaatctcctctcggtgttcccacgcagtctgctcacccag 38810
>dbj|AP004911.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13O11, TM0069, complete sequence Length = 103659 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 228 tgaagaagaggtttggattgctgccaacccagcagcca 265 |||||||| | ||||||||||| ||||||||||||||| Sbjct: 47981 tgaagaagcgatttggattgctaccaacccagcagcca 47944
>ref|NM_127608.3| Arabidopsis thaliana NOP10; RNA binding (NOP10) mRNA, complete cds Length = 476 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||| |||| ||| |||||||||||||| ||||| ||||| || |||||| Sbjct: 86 aagatgtatcttcagtgctatatcaacgagaagggtgagaaggtttacacaactaagaag 145 Query: 143 gaatc 147 ||||| Sbjct: 146 gaatc 150
>gb|AY054656.1| Arabidopsis thaliana Unknown protein (At2g20490; T13C7.8) mRNA, complete cds Length = 418 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||| |||| ||| |||||||||||||| ||||| ||||| || |||||| Sbjct: 86 aagatgtatcttcagtgctatatcaacgagaagggtgagaaggtttacacaactaagaag 145 Query: 143 gaatc 147 ||||| Sbjct: 146 gaatc 150
>gb|AY087879.1| Arabidopsis thaliana clone 39169 mRNA, complete sequence Length = 419 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 ||||||||||| |||| ||| |||||||||||||| ||||| ||||| || |||||| Sbjct: 86 aagatgtatcttcagtgctatatcaacgagaagggtgagaaggtttacacaactaagaag 145 Query: 143 gaatc 147 ||||| Sbjct: 146 gaatc 150
>gb|DQ430309.1| Sorghum bicolor voucher PI585454 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430308.1| Sorghum bicolor voucher PI267539 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430307.1| Sorghum bicolor voucher PI267408 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430306.1| Sorghum bicolor voucher PI221607 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430305.1| Sorghum bicolor voucher PI152702 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430304.1| Sorghum bicolor voucher NSL92371 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430303.1| Sorghum bicolor voucher NSL87902b locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430302.1| Sorghum bicolor voucher NSL87902a locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430301.1| Sorghum bicolor voucher NSL87666 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430300.1| Sorghum bicolor voucher NSL77217 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430299.1| Sorghum bicolor voucher NSL77034 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430298.1| Sorghum bicolor voucher NSL56174 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430297.1| Sorghum bicolor voucher NSL56003 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430296.1| Sorghum bicolor voucher NSL55243 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430295.1| Sorghum bicolor voucher NSL51365 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430294.1| Sorghum bicolor voucher NSL51030 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430293.1| Sorghum bicolor voucher NSL50875 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>gb|DQ430292.1| Sorghum bicolor voucher BTx623 locus pSB1901 genomic sequence Length = 550 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||||||| |||||||||||| Sbjct: 542 ctgccaacccagaagccagcaccgaagtactgaagc 507
>ref|NM_001036302.1| Arabidopsis thaliana NOP10; RNA binding (NOP10) mRNA, complete cds Length = 479 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaaggg 117 ||||||||||| |||| ||| |||||||||||||| Sbjct: 92 aagatgtatcttcagtgctatatcaacgagaaggg 126
>ref|XM_843924.1| PREDICTED: Canis familiaris similar to nucleolar protein family A, member 3 (LOC607299), mRNA Length = 730 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 182 gctcgtttctccccggatgacaagtacgcccgtca 216 ||||| |||||||| |||||||||||| ||||||| Sbjct: 403 gctcgcttctccccagatgacaagtactcccgtca 437
>gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map mi148, complete sequence Length = 52784 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaaggg 117 ||||||||||| |||| ||| |||||||||||||| Sbjct: 25354 aagatgtatcttcagtgctatatcaacgagaaggg 25388
>ref|XM_514307.2| PREDICTED: Pan troglodytes centrosomal protein 170kDa, transcript variant 3 (CEP170), mRNA Length = 7376 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 1417 cagcacaaaactactgaagcactgaa 1442
>ref|XM_001136033.1| PREDICTED: Pan troglodytes centrosomal protein 170kDa, transcript variant 2 (CEP170), mRNA Length = 7454 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 1417 cagcacaaaactactgaagcactgaa 1442
>ref|XM_001135941.1| PREDICTED: Pan troglodytes centrosomal protein 170kDa, transcript variant 1 (CEP170), mRNA Length = 6981 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 650 cagcacaaaactactgaagcactgaa 675
>ref|NR_003135.1| Homo sapiens centrosomal protein 170kDa-like (CEP170L) on chromosome 4 Length = 90477 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 13299 cagcacaaaactactgaagcactgaa 13324
>gb|DQ777710.1| Neisseria meningitidis isolate opa-328 colony opacity-associated adhesin (opa) gene, partial cds Length = 522 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ttccccgccgcttcttctctcg 42 |||||||||||||||||||||| Sbjct: 271 ttccccgccgcttcttctctcg 292
>ref|NM_001042405.1| Homo sapiens centrosomal protein 170kDa (CEP170), transcript variant gamma, mRNA Length = 6832 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 859 cagcacaaaactactgaagcactgaa 884
>ref|NM_001042404.1| Homo sapiens centrosomal protein 170kDa (CEP170), transcript variant beta, mRNA Length = 6910 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 859 cagcacaaaactactgaagcactgaa 884
>ref|NM_014812.2| Homo sapiens centrosomal protein 170kDa (CEP170), transcript variant alpha, mRNA Length = 7204 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 859 cagcacaaaactactgaagcactgaa 884
>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence Length = 193579 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 450 gctctctgtgtgactttcatttggga 475 |||||||||||| ||||||||||||| Sbjct: 107049 gctctctgtgtgtctttcatttggga 107074
>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence Length = 157951 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 62127 cagcacaaaactactgaagcactgaa 62152
>gb|AC092782.2| Homo sapiens chromosome 1 clone RP11-411G13, complete sequence Length = 155355 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 90521 cagcacaaaactactgaagcactgaa 90496
>dbj|AB007939.1| Homo sapiens mRNA for KIAA0470 protein, partial cds Length = 6456 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 504 cagcacaaaactactgaagcactgaa 529
>gb|BC050722.1| Homo sapiens centrosomal protein 170kDa, mRNA (cDNA clone IMAGE:6067305), partial cds Length = 1667 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 774 cagcacaaaactactgaagcactgaa 799
>gb|AF001186.1|AF001186 Neisseria meningitidis Z3667 opacity protein (opa) gene, partial cds Length = 734 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ttccccgccgcttcttctctcg 42 |||||||||||||||||||||| Sbjct: 336 ttccccgccgcttcttctctcg 357
>gb|BT001178.1| Arabidopsis thaliana Unknown protein (At2g20490) mRNA, complete cds Length = 283 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Plus Query: 86 atgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaaggaa 145 |||||||| |||| ||| |||||||||||||| ||||| ||||| || ||||||||| Sbjct: 1 atgtatcttcagtgctatatcaacgagaagggtgagaaggtttacacaactaagaaggaa 60 Query: 146 tc 147 || Sbjct: 61 tc 62
>dbj|AB022659.1| Homo sapiens mRNA for KARP-1-binding protein 3, complete cds Length = 6456 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 504 cagcacaaaactactgaagcactgaa 529
>dbj|AB022658.1| Homo sapiens mRNA for KARP-1-binding protein 2 (KAB2), complete cds Length = 6536 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 504 cagcacaaaactactgaagcactgaa 529
>dbj|AB022657.1| Homo sapiens mRNA for KARP-1-binding protein 1 (KAB1), complete cds Length = 6830 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 cagcacaaaagtactgaagcactgaa 289 |||||||||| ||||||||||||||| Sbjct: 504 cagcacaaaactactgaagcactgaa 529
>dbj|AK224748.1| Solanum lycopersicum cDNA, clone: FC12BB08, HTC in fruit Length = 386 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 83 aagatgtatctccagtactacatcaacgagaagggcatcaaggtgtacaccaccaagaag 142 |||||||||||||||| |||||||| ||||| || ||| || |||||||| ||||| Sbjct: 25 aagatgtatctccagttttacatcaatgagaatggtgacaaagtttacaccactaagaaa 84 Query: 143 gaatc 147 ||||| Sbjct: 85 gaatc 89
>gb|AC130215.3| Mus musculus BAC clone RP23-286E1 from 6, complete sequence Length = 168515 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 taagagatctgtttactttgg 320 ||||||||||||||||||||| Sbjct: 55308 taagagatctgtttactttgg 55288
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 aacccagcagccagcacaaaa 273 ||||||||||||||||||||| Sbjct: 30736 aacccagcagccagcacaaaa 30716
>emb|CR855226.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0616E02-H0507E05, complete sequence Length = 110274 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ccctcttccccgccgcttcttctc 39 ||||| |||||||||||||||||| Sbjct: 47254 ccctcctccccgccgcttcttctc 47231
>gb|AC175468.3| Pan troglodytes BAC clone CH251-177K19 from chromosome 11, complete sequence Length = 212162 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ccgccgccaacctctgggct 63 |||||||||||||||||||| Sbjct: 137265 ccgccgccaacctctgggct 137284
>gb|DQ632742.1| Hiatella arctica mitochondrion, complete genome Length = 18244 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tacttatcttgctcattatt 392 |||||||||||||||||||| Sbjct: 16109 tacttatcttgctcattatt 16128
>gb|AC163739.2| Pan troglodytes BAC clone CH251-503F22 from chromosome unknown, complete sequence Length = 220347 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ccgccgccaacctctgggct 63 |||||||||||||||||||| Sbjct: 22614 ccgccgccaacctctgggct 22633
>gb|DQ430310.1| Sorghum propinquum locus pSB1901 genomic sequence Length = 928 Score = 40.1 bits (20), Expect = 7.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagcacaaaagtactgaagc 283 |||||||||||| ||||| ||| |||||||||||| Sbjct: 920 ctgccaacccagaagccaccactgaagtactgaagc 885
>gb|AC165289.2| Mus musculus BAC clone RP23-467L11 from chromosome 17, complete sequence Length = 193418 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gattgctgccaacccagcag 262 |||||||||||||||||||| Sbjct: 19112 gattgctgccaacccagcag 19131
>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01, complete sequence Length = 161741 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 cttcttctctcgcccgccgccaac 54 ||||||||| |||||||||||||| Sbjct: 5107 cttcttctcccgcccgccgccaac 5130
>gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome 16, complete sequence Length = 183323 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgtgtgactttcatttggga 475 |||||||||||||||||||| Sbjct: 115905 tgtgtgactttcatttggga 115924
>gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome 16, complete sequence Length = 215805 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tgtgtgactttcatttggga 475 |||||||||||||||||||| Sbjct: 122719 tgtgtgactttcatttggga 122700
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 cttcttctctcgcccgccgccaac 54 ||||||||| |||||||||||||| Sbjct: 140938 cttcttctcccgcccgccgccaac 140961
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gtctgcccacccagctcgtt 188 |||||||||||||||||||| Sbjct: 6397839 gtctgcccacccagctcgtt 6397820
>gb|AC092171.4| Homo sapiens BAC clone RP11-1275H24 from 7, complete sequence Length = 85132 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctgccaacccagcagccagc 267 |||||||||||||||||||| Sbjct: 37833 ctgccaacccagcagccagc 37814
>gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, complete sequence Length = 131796 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tgaatgtaatgctatgatattatg 426 ||||||||||||||||| |||||| Sbjct: 50708 tgaatgtaatgctatgacattatg 50731
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ccctcttccccgccgcttcttctc 39 ||||| |||||||||||||||||| Sbjct: 381802 ccctcctccccgccgcttcttctc 381779
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 cttcttctctcgcccgccgccaac 54 ||||||||| |||||||||||||| Sbjct: 25200440 cttcttctcccgcccgccgccaac 25200463
>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence Length = 177056 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgtttactttggtgaatgct 328 |||||||||||||||||||| Sbjct: 61876 tgtttactttggtgaatgct 61895
>emb|BX538242.1|HSM806479 Homo sapiens genomic DNA; cDNA DKFZp686F08109 (from clone DKFZp686F08109) Length = 8691 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 tgaatgtaatgctatgatattatg 426 ||||||||||||||||| |||||| Sbjct: 5362 tgaatgtaatgctatgacattatg 5339
>gb|AC137492.2| Homo sapiens chromosome 16 clone LA16c-379F6, complete sequence Length = 36887 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgcccgccgccaacctctgg 60 |||||||||||||||||||| Sbjct: 4518 cgcccgccgccaacctctgg 4537
>gb|AC092127.3| Homo sapiens chromosome 16 clone RP11-118F19, complete sequence Length = 62827 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgcccgccgccaacctctgg 60 |||||||||||||||||||| Sbjct: 42120 cgcccgccgccaacctctgg 42139
>gb|DQ323045.1| Phaseolus vulgaris clone BAC-71F18, complete sequence Length = 157468 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tatggatcgtactcttatgt 442 |||||||||||||||||||| Sbjct: 150781 tatggatcgtactcttatgt 150762
>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22, complete sequence Length = 165445 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tgtttactttggtgaatgct 328 |||||||||||||||||||| Sbjct: 10205 tgtttactttggtgaatgct 10186
>dbj|AP003774.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-147G6, complete sequence Length = 166128 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ccgccgccaacctctgggct 63 |||||||||||||||||||| Sbjct: 21045 ccgccgccaacctctgggct 21064
>dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-783K16, complete sequence Length = 166356 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ccgccgccaacctctgggct 63 |||||||||||||||||||| Sbjct: 112226 ccgccgccaacctctgggct 112245
>gb|AC117831.6| Mus musculus chromosome 15, clone RP24-106E17, complete sequence Length = 173772 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgtgtgactttcatttggga 475 |||||||||||||||||||| Sbjct: 86316 tgtgtgactttcatttggga 86335
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 acgagaagggcatcaaggtg 127 |||||||||||||||||||| Sbjct: 2172446 acgagaagggcatcaaggtg 2172465
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ccctcttccccgccgcttcttctc 39 ||||| |||||||||||||||||| Sbjct: 66461 ccctcctccccgccgcttcttctc 66438
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ccctcttccccgccgcttcttctc 39 ||||| |||||||||||||||||| Sbjct: 20554 ccctcctccccgccgcttcttctc 20531
>gb|AC170807.2| Mus musculus BAC clone RP23-374I2 from chromosome 17, complete sequence Length = 208318 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gattgctgccaacccagcag 262 |||||||||||||||||||| Sbjct: 155986 gattgctgccaacccagcag 156005
>emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chromosome 2, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 atgtgctctctgtgtgactttcat 469 ||||| |||||||||||||||||| Sbjct: 175638 atgtggtctctgtgtgactttcat 175661 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 82,740,851 Number of extensions: 4361567 Number of successful extensions: 312209 Number of sequences better than 10.0: 82 Number of HSP's gapped: 312205 Number of HSP's successfully gapped: 89 Length of query: 497 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 475 Effective length of database: 18,508,616,841 Effective search space: 8791592999475 Effective search space used: 8791592999475 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)