ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf57k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q50604:Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 - Mycob... 49 4e-05
2Q8GCV0:HEMH_LEPBI Ferrochelatase - Leptospira biflexa 33 3.9
3Q299G2:CYFIP_DROPS Cytoplasmic FMR1-interacting protein - Drosop... 32 5.0
4Q9VF87:CYFIP_DROME Cytoplasmic FMR1-interacting protein - Drosop... 32 5.0
5Q27474:DNLI_CAEEL DNA ligase - Caenorhabditis elegans 32 6.6

>Q50604:Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 - Mycobacterium tuberculosis|
          Length = 164
 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 33/127 (25%), Positives = 62/127 (48%)
 Frame = +3

Query: 528 GREIPESAPQPAIVLRIEDGSGTLLPIIVLEMPSVLLMAAIRHVHIARPTIYQVVKELID 707
           G  + +   QP ++LR  +G    LPI + +  +  +    + V   RP  + ++++LI 
Sbjct: 8   GIRVEQPQNQPVLLLREANGD-RYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIA 66

Query: 708 KMGYEVKLVRVNKRIQEAYCAELYLTKTGDQTECITFDLRPSDAINIAVRCKVPIQVHRS 887
            +G+ +K VR+    +  + A+L   +       I    RPSD++ IA+R  VPI V  +
Sbjct: 67  ALGHSLKEVRIVDLQEGTFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVEEA 120

Query: 888 LAYSDGI 908
           +    G+
Sbjct: 121 VLAQAGL 127



to top

>Q8GCV0:HEMH_LEPBI Ferrochelatase - Leptospira biflexa|
          Length = 362

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 445 TASSTVELTXXXXXSLKFLAMYPLP--SDEELKLRQIGRKFFEDDWEIGETSLVMLRYLD 272
           T  ST+++        K +A+YP+   SD    L +IG +F +  WE+G  S V +  L 
Sbjct: 263 TEPSTIQMISSLAKQGKHIAVYPISFVSDHIETLEEIGEQFKDLTWEMGGKSFVRIPALG 322

Query: 271 TAP 263
             P
Sbjct: 323 IYP 325



to top

>Q299G2:CYFIP_DROPS Cytoplasmic FMR1-interacting protein - Drosophila pseudoobscura|
            (Fruit fly)
          Length = 1291

 Score = 32.3 bits (72), Expect = 5.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
 Frame = +3

Query: 927  KFVASAGLSDGLLFTELDRPDGQPCVEAQEFSLV-----------RNMFIAVVEERYKDA 1073
            K   +  LS+  +  EL  PD QPC+EAQ  S++           RN F+  + +  ++A
Sbjct: 4    KITLADALSNVEVLDELSLPDEQPCIEAQPCSIIYKANFDTNFEDRNGFVTGIAKYIEEA 63

Query: 1074 AT 1079
             T
Sbjct: 64   TT 65



to top

>Q9VF87:CYFIP_DROME Cytoplasmic FMR1-interacting protein - Drosophila melanogaster (Fruit|
            fly)
          Length = 1291

 Score = 32.3 bits (72), Expect = 5.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
 Frame = +3

Query: 927  KFVASAGLSDGLLFTELDRPDGQPCVEAQEFSLV-----------RNMFIAVVEERYKDA 1073
            K   +  LS+  +  EL  PD QPC+EAQ  S++           RN F+  + +  ++A
Sbjct: 4    KITLADALSNVEVLDELSLPDEQPCIEAQPCSIIYKANFDTNFEDRNGFVTGIAKYIEEA 63

Query: 1074 AT 1079
             T
Sbjct: 64   TT 65



to top

>Q27474:DNLI_CAEEL DNA ligase - Caenorhabditis elegans|
          Length = 773

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 306 PISQSSSKNFRPICRSFSSSSDGNGYMARNFNENDEDYVNSTVLEAVEVRSGSEGYIVKM 485
           P+ +   +  R + R+     DG+ Y A + + ND D +NS   EAV+  +  EG ++K 
Sbjct: 388 PLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTNDTDEINSFFDEAVQ--NKCEGLMIKT 445

Query: 486 RD 491
            D
Sbjct: 446 LD 447


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 260,507,147
Number of extensions: 5974473
Number of successful extensions: 15653
Number of sequences better than 10.0: 5
Number of HSP's gapped: 15648
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 360
Effective length of database: 68,593,924
Effective search space: 24693812640
Effective search space used: 24693812640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top