ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf57k17 |
|---|---|
| Clone Library Name | barley_pub |
>P82538:TL26_ARATH Thylakoid lumenal 25.6 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 230 Score = 107 bits (268), Expect = 7e-23 Identities = 51/124 (41%), Positives = 74/124 (59%) Frame = +2 Query: 512 GHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFNLVNEVYAAPNQIPTIYEMQE 691 G D +KD L+SV V +PT K I++ GP + L+ +V A PNQ T+ + E Sbjct: 106 GQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASE 165 Query: 692 RTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADS 871 VDG+ Y+ FE+ ++A Y A TI + NG +YTL ANERRW +++++L V DS Sbjct: 166 HDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDS 225 Query: 872 FKIS 883 FKI+ Sbjct: 226 FKIT 229
>O49292:TL30_ARATH Thylakoid lumenal 29.8 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 274 Score = 36.6 bits (83), Expect = 0.20 Identities = 26/60 (43%), Positives = 32/60 (53%) Frame = +2 Query: 701 DGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKI 880 DGR Y+ FE LE P ++A A GN R Y VT N +W R LK +A SF+I Sbjct: 220 DGRLYYQFE--LEPPHVLITATAA---GN-RLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273
>P82658:TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 229 Score = 35.4 bits (80), Expect = 0.45 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Frame = +2 Query: 512 GHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFNL------VNEVYAAPNQIPT 673 G DS F + + + + F+ R L P D + NL + ++ A +++ + Sbjct: 108 GTDSEFYNPKKKTEKEYLTFL----AGFRQLAPRDVILNNLALSDVELQDLIAGADKVVS 163 Query: 674 IYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKL 853 E ++ T G+ Y+ +E D G G + T+ R Y V A W+R + L Sbjct: 164 -EERKDET--GQVYYLYEID----GVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTL 216 Query: 854 KVVADSFK 877 + DSFK Sbjct: 217 THLRDSFK 224
>Q40407:PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplast precursor -| Narcissus pseudonarcissus (Daffodil) Length = 265 Score = 34.3 bits (77), Expect = 0.99 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 19/165 (11%) Frame = +2 Query: 437 TVDSYGFHITLFAAPGAS*QDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMD 616 TV GF I + + S ++ +F G ++D +V V PT K I+D G + Sbjct: 99 TVTGDGFKILIPSKWNPS-KEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPE 157 Query: 617 EAIFNL-------------VNEVYAAPNQIPT--IYEMQERTVDGRNYWTFEY---DLEA 742 + + + ++E PN + T I E V G++Y++ + Sbjct: 158 QFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADG 217 Query: 743 PGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSF 874 G T + +G+ Y A ++RW + K ++ A SF Sbjct: 218 DEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSF 262
>P53560:YTBQ_BACSU Uncharacterized protein ytbQ - Bacillus subtilis| Length = 253 Score = 32.3 bits (72), Expect = 3.8 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = +2 Query: 644 VYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANE 823 V+A+ N + +YE R++ GR T +Y L YGV + IG+ Y Sbjct: 108 VFASSNHVTDVYEKDGRSLLGREITTSDYPLSKNLYGVLKLTSEQIGHLFY--------- 158 Query: 824 RRWSRLRNKLKVV 862 L NKL V+ Sbjct: 159 -----LENKLSVI 166
>O22446:HDA19_ARATH Histone deacetylase 19 - Arabidopsis thaliana (Mouse-ear cress)| Length = 501 Score = 32.3 bits (72), Expect = 3.8 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +3 Query: 126 LYSYCQAERGSSVGGERKLDRSIL**QEGHQKEIGIAWCWSFIHCPAKQPLCICWRSTKE 305 LYS+CQ G SVGG KL+ + +I I W H + C+ + Sbjct: 114 LYSFCQTYAGGSVGGSVKLNHGLC--------DIAINWAGGLHHAKKCEASGFCYVNDIV 165 Query: 306 LPV---LRRRERWILVPL 350 L + L++ ER + V + Sbjct: 166 LAILELLKQHERVLYVDI 183
>Q9SLQ8:PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplast precursor - Cucumis| sativus (Cucumber) Length = 263 Score = 31.6 bits (70), Expect = 6.4 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%) Frame = +2 Query: 503 DFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVNEVYAA----- 655 +F G ++D ++ V PT K I+D G +E + + L + Y Sbjct: 118 EFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASE 177 Query: 656 ----PNQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGVSAFATIAIGNGRYYTLI 808 P+ + T I E V+G++Y+ + G T + +G+ Y Sbjct: 178 GGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICK 237 Query: 809 VTANERRWSR-LRNKLKVVADSFKIS 883 A ++RW + R ++ A SF ++ Sbjct: 238 AQAGDKRWFKGARKFVEGAASSFSVA 263
>Q04127:PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplast precursor -| Nicotiana tabacum (Common tobacco) Length = 266 Score = 31.6 bits (70), Expect = 6.4 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 19/149 (12%) Frame = +2 Query: 494 QDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVNEVYAAPN 661 ++ ++ G F+D +V VA PT K I D G ++ + + L + Y+ Sbjct: 118 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 177 Query: 662 Q-----------IPTIYEMQERTVDGRNYWTFEY---DLEAPGYGVSAFATIAIGNGRYY 799 I + E V G+ Y+ + G T + +G+ Y Sbjct: 178 DSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLY 237 Query: 800 TLIVTANERRWSRLRNK-LKVVADSFKIS 883 A ++RW + K ++ A SF ++ Sbjct: 238 ICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>O23403:TL215_ARATH Thylakoid lumenal 21.5 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 287 Score = 31.6 bits (70), Expect = 6.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 307 YRSYVDANDGYSYLYPADW 363 +R Y+D DGYS+ YP +W Sbjct: 109 FREYIDTFDGYSFKYPQNW 127
>O01159:RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 - Caenorhabditis| elegans Length = 452 Score = 31.2 bits (69), Expect = 8.4 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = +2 Query: 527 FKDRNVQLQSVRVAFI-PTQKTDIRDLGPMDEAI 625 FK+R +++Q RVA I P KTD + LG ++EAI Sbjct: 228 FKERPLKIQHSRVAIIKPQAKTDEQALGEIEEAI 261
>O82485:OPT7_ARATH Oligopeptide transporter 7 - Arabidopsis thaliana (Mouse-ear cress)| Length = 766 Score = 31.2 bits (69), Expect = 8.4 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +3 Query: 480 RALHDRISTSWGMIQRSR----TVMCSCSLSVWPSFLLRKQTFVT*VRWMRPSSI 632 RALH++ + G + R++ +CS + V+P +L + T ++ V W PSS+ Sbjct: 228 RALHEKEERTKGGLTRTQFFVIAFVCSFAYYVFPGYLFQIMTSLSWVCWFFPSSV 282
>P56521:HDA19_MAIZE Probable histone deacetylase 19 - Zea mays (Maize)| Length = 513 Score = 31.2 bits (69), Expect = 8.4 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = +3 Query: 126 LYSYCQAERGSSVGGERKLDRSIL**QEGHQKEIGIAWCWSFIHCPAKQPLCICWRSTKE 305 LYS+CQ G+SVGG K + H +I I W H + C+ + Sbjct: 120 LYSFCQTYAGASVGGAVKFN---------HGHDIAINWSGGLHHAKKCEASGFCYVNDIV 170 Query: 306 LPV---LRRRERWILVPL 350 L + L+ ER + V + Sbjct: 171 LAILELLKHHERVLYVDI 188 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 208,088,587 Number of extensions: 4635940 Number of successful extensions: 11192 Number of sequences better than 10.0: 12 Number of HSP's gapped: 11180 Number of HSP's successfully gapped: 12 Length of query: 384 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 269 Effective length of database: 69,142,514 Effective search space: 18599336266 Effective search space used: 18599336266 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
