ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf54c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q92781:RDH1_HUMAN 11-cis retinol dehydrogenase - Homo sapiens (H... 41 0.025
2O59933:ERG25_CANAL C-4 methylsterol oxidase - Candida albicans (... 40 0.056
3Q9ZPE4:FBW2_ARATH F-box protein FBW2 - Arabidopsis thaliana (Mou... 39 0.13
4Q27979:RDH1_BOVIN 11-cis retinol dehydrogenase - Bos taurus (Bov... 38 0.21
5Q7SBB6:ERG3_NEUCR Probable C-5 sterol desaturase - Neurospora cr... 37 0.28
6O75845:SC5D_HUMAN Lathosterol oxidase - Homo sapiens (Human) 35 1.1
7P53045:ERG25_YEAST C-4 methylsterol oxidase - Saccharomyces cere... 35 1.1
8Q8TF63:DCNP1_HUMAN Dendritic cell nuclear protein 1 - Homo sapie... 35 1.1
9Q9UUH4:ERG25_SCHPO C-4 methylsterol oxidase - Schizosaccharomyce... 35 1.4
10Q3URU2:PEG3_MOUSE Paternally expressed gene 3 protein - Mus musc... 33 4.0
11Q9GKT2:CE004_MACFA Uncharacterized protein C5orf4 homolog - Maca... 33 4.0
12P43574:GAT1_YEAST Transcriptional regulatory protein GAT1 - Sacc... 33 5.3
13P38992:SUR2_YEAST Protein SUR2 - Saccharomyces cerevisiae (Baker... 33 6.9
14Q13591:SEM5A_HUMAN Semaphorin-5A precursor - Homo sapiens (Human) 32 9.0
15Q5QZ53:UBIG_IDILO 3-demethylubiquinone-9 3-methyltransferase - I... 32 9.0
16A2VEC9:SSPO_HUMAN SCO-spondin precursor - Homo sapiens (Human) 32 9.0
17Q8JIS3:DER_CHICK D-erythrulose reductase - Gallus gallus (Chicken) 32 9.0

>Q92781:RDH1_HUMAN 11-cis retinol dehydrogenase - Homo sapiens (Human)|
          Length = 318
 Score = 40.8 bits (94), Expect = 0.025
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 1565 IPSNTKEVFLTGATSKLGRAIALYLCRKRIRVIMLTMSSERFLKIQREAPAEFQQYLVQV 1744
            +P++   VF+TG  S  GR +AL L ++  RV+   ++      +QR A +     L+ +
Sbjct: 24   LPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDI 83

Query: 1745 TKYQAAQNCKTWL 1783
            T  Q+ Q    W+
Sbjct: 84   TDPQSVQQAAKWV 96



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>O59933:ERG25_CANAL C-4 methylsterol oxidase - Candida albicans (Yeast)|
          Length = 308

 Score = 39.7 bits (91), Expect = 0.056
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 656 YWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLTL-TMGVPLAGAFLMG 829
           YW HR LH   +F+   H  HH       L A +  P+E  LL L T+G+P+    + G
Sbjct: 157 YWFHRGLHYG-VFYKYIHKQHHRYAAPFGLAAEYAHPVEVALLGLGTVGIPIVWCLITG 214



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>Q9ZPE4:FBW2_ARATH F-box protein FBW2 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 317

 Score = 38.5 bits (88), Expect = 0.13
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -2

Query: 1797 SHLPTSHVL----QFCAAWYLVTCTRYCWNSAGASLWIFR-NLSDDIVSMMTLILFRQR* 1633
            SHLP   VL    + C AW       YCW      LW  R + SD +  M+ +++ R   
Sbjct: 23   SHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDHLDRMLEMLIPRS-- 80

Query: 1632 RAMALPSLDVAPVRNTSL 1579
             A +L  L V  +RN S+
Sbjct: 81   -AGSLRKLSVTGLRNDSI 97



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>Q27979:RDH1_BOVIN 11-cis retinol dehydrogenase - Bos taurus (Bovine)|
          Length = 318

 Score = 37.7 bits (86), Expect = 0.21
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +2

Query: 1565 IPSNTKEVFLTGATSKLGRAIALYLCRKRIRVIMLTMSSERFLKIQREAPAEFQQYLVQV 1744
            +P++   +F+TG  S  GR +AL L ++  RV+   ++      +QR A +     L+ V
Sbjct: 24   LPASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDV 83

Query: 1745 TKYQAAQNCKTWL 1783
            T  Q+ +    W+
Sbjct: 84   TDPQSIRQAVKWV 96



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>Q7SBB6:ERG3_NEUCR Probable C-5 sterol desaturase - Neurospora crassa|
          Length = 344

 Score = 37.4 bits (85), Expect = 0.28
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 1/142 (0%)
 Frame = +2

Query: 626  LHVGFSEPVFYWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLTLTMGVP 805
            L + F++   YW HR LH  PL +   H  HH   +  P  +    P++    ++   + 
Sbjct: 168  LFIMFTDFGIYWIHRGLH-HPLVYKHLHKPHHKWIMPTPYASHAFHPIDGFAQSIPYHIF 226

Query: 806  LAGAFLMGAGSVGL-VYVHLLTFDYLRSMGYSNVEVISHRVFEAVXXXXXXXXXXXXXXX 982
                 L     VGL V+++  T        Y+N  VI+     +V               
Sbjct: 227  PFIFPLQKMAYVGLFVFINFWTIMIHDGEYYANNPVINGAACHSV--------------- 271

Query: 983  HHREKDSNFCLFMPLFDLLGGT 1048
            HH   + N+  F  L+D LGG+
Sbjct: 272  HHFAFNYNYGQFTTLWDRLGGS 293



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>O75845:SC5D_HUMAN Lathosterol oxidase - Homo sapiens (Human)|
          Length = 299

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 7/170 (4%)
 Frame = +2

Query: 608  LGIALLLHVGFSEPVFYWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLT 787
            L ++++  + F++   YW HR LH   L + + H  HH   +  P  +    P++  L +
Sbjct: 119  LVVSIISFLFFTDMFIYWIHRGLHHR-LVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQS 177

Query: 788  LTMGVPLAGAFLMGAGSVGLVYVHLLTFDYLRSMGYSNVEVISHRVFEAVXXXXXXXXXX 967
            L   +     F+     V  + +++L   +  S        I    F             
Sbjct: 178  LPYHI---YPFIFPLHKVVYLSLYILVNIWTIS--------IHDGDFRVPQILQPFINGS 226

Query: 968  XXXXXHHREKDSNFCLFMPLFDLLGGTL-NSKSWE------LQKEIYQGK 1096
                 HH   D N+  +  L+D +GG+  N  S+E        KE+ +GK
Sbjct: 227  AHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGK 276



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>P53045:ERG25_YEAST C-4 methylsterol oxidase - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 309

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 656 YWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLTL-TMGVPLAGAFLMGA 832
           YWAHR  H   +F+   H  HH       L+A +  P E L L   T+G+P+   ++M  
Sbjct: 157 YWAHRLFHYG-VFYKYIHKQHHRYAAPFGLSAEYAHPAETLSLGFGTVGMPI--LYVMYT 213

Query: 833 GSVGL 847
           G + L
Sbjct: 214 GKLHL 218



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>Q8TF63:DCNP1_HUMAN Dendritic cell nuclear protein 1 - Homo sapiens (Human)|
          Length = 244

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
 Frame = +1

Query: 856  APPHVRLSSEHGVQQCGGH--LSQGLRGCPTAQIPPLHPDVSEPAPQGEGLQLLPLHASL 1029
            A  H++ S  HG++   GH  L +G  G  T + P  H   S   P+  G +LLPL A L
Sbjct: 5    AATHIQNSRSHGLETVPGHQRLERGAGG-ETPEFPGCH---SPAPPENFGNELLPLSAPL 60

Query: 1030 R-------PPGRYPKLQVMGAAEG 1080
            +       PPGR   L      EG
Sbjct: 61   QGLSEGLYPPGRNKTLPAGVLREG 84



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>Q9UUH4:ERG25_SCHPO C-4 methylsterol oxidase - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 300

 Score = 35.0 bits (79), Expect = 1.4
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 656 YWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLTL-TMGVPL 808
           YWAHR  H   +F+   H  HH       L+A +  PLE +LL   T+ VPL
Sbjct: 151 YWAHRLFHYG-IFYRFIHKVHHRYSAPFGLSAEYAHPLEIILLGAGTVFVPL 201



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>Q3URU2:PEG3_MOUSE Paternally expressed gene 3 protein - Mus musculus (Mouse)|
          Length = 1571

 Score = 33.5 bits (75), Expect = 4.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 928  EDPVRDDLHIAVPHAPKIVEREEVHVDQAHGPSPHQEGPCQRDPH 794
            E+P  D  H   PH  K    +E H D+ HG  PH + P  ++PH
Sbjct: 985  EEPHDDKPHGQEPHDDK-PHGQEPHDDKPHGQEPHGDEPHGQEPH 1028



 Score = 32.7 bits (73), Expect = 6.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 928  EDPVRDDLHIAVPHAPKIVEREEVHVDQAHGPSPHQEGPCQRDPH 794
            ++P+  ++    PH  K    +E H D+ HG  PH + P  ++PH
Sbjct: 975  KEPLDQEMRSEEPHDDK-PHGQEPHDDKPHGQEPHDDKPHGQEPH 1018



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>Q9GKT2:CE004_MACFA Uncharacterized protein C5orf4 homolog - Macaca fascicularis (Crab|
           eating macaque) (Cynomolgus monkey)
          Length = 333

 Score = 33.5 bits (75), Expect = 4.0
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +2

Query: 614 IALLLHVGFSEPVFYWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLLTLT 793
           + L +     E +FY++HR LH  P F+ + H  HH       + + +  P+E ++  + 
Sbjct: 173 LELAIFTLIEEVLFYYSHRLLH-HPTFYKKIHKKHHEWTAPIGVISLYAHPIEHVVSNML 231

Query: 794 MGVPLAGAFLMGA 832
             +   G  +MG+
Sbjct: 232 PAI--VGPLVMGS 242



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>P43574:GAT1_YEAST Transcriptional regulatory protein GAT1 - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 510

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = -2

Query: 2190 NTIHGGWRRERS*LLRFGCIPHLRRPGSYHTGV----RPCLSAAFHTTSIRSTSSAPTSW 2023
            NT         S LLR    P + +PGS         +P L     +TS++S+++ P++ 
Sbjct: 243  NTNTSASTNTNSPLLRRNPSPSIVKPGSRRNSSVRKKKPALKKIKSSTSVQSSATPPSNT 302

Query: 2022 CCQPSRKCTTPPAWHACTTPRSIVYSQEPR 1933
               P  KC+       CTT  + ++ ++P+
Sbjct: 303  SSNPDIKCSN------CTTSTTPLWRKDPK 326



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>P38992:SUR2_YEAST Protein SUR2 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 349

 Score = 32.7 bits (73), Expect = 6.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 656 YWAHRALHGAPLFFSQYHAGHHSTPVTQPLTAGFGTPLEALLL-TLTMGVPL 808
           Y+ HR +H     +  +H+ HH   V     A F  P+E  LL TL  G+ +
Sbjct: 173 YFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAM 224



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>Q13591:SEM5A_HUMAN Semaphorin-5A precursor - Homo sapiens (Human)|
          Length = 1074

 Score = 32.3 bits (72), Expect = 9.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 558 RCSSRGWRISACGTRGGWASRCCCMWASQSPCST 659
           +C   G  I+ C   GGW       W S SPCST
Sbjct: 581 QCEGPGMEIANCSRNGGWTP-----WTSWSPCST 609



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>Q5QZ53:UBIG_IDILO 3-demethylubiquinone-9 3-methyltransferase - Idiomarina loihiensis|
          Length = 243

 Score = 32.3 bits (72), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 1763 QNCKTWLVGKWLSPREQRWAPPGTHFHQFVVPP 1861
            +N K+WL+G   +     W P GTH HQ  + P
Sbjct: 163  RNVKSWLLGIVAAEHVLGWVPKGTHQHQRFIKP 195



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>A2VEC9:SSPO_HUMAN SCO-spondin precursor - Homo sapiens (Human)|
          Length = 5147

 Score = 32.3 bits (72), Expect = 9.0
 Identities = 33/117 (28%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
 Frame = -2

Query: 2049 STSSAPTSWCCQPSRKCTTPPAWHACTTP------RSIVYSQEPRPCT--SLGSLMAASL 1894
            +TS     W  QP   C   P    C  P                PCT  SL   +  +L
Sbjct: 4828 ATSCPCLCWHLQPGAICVQEPCQPGCGCPGGQLLHNGTCVPPTACPCTQHSLPWGLTLTL 4887

Query: 1893 P*VQSRRNPMIGGTTNWWKCV-PGGAHRCSLGDSHLPTSHVLQFCAAWYLVTCTRYC 1726
                    P    T N  +CV  GGA  CSL D  +P     Q  A   L  C + C
Sbjct: 4888 EEQAQELPPGTVLTRNCTRCVCHGGAFSCSLVDCQVPPGETWQQVAPGELGLCEQTC 4944



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>Q8JIS3:DER_CHICK D-erythrulose reductase - Gallus gallus (Chicken)|
          Length = 246

 Score = 32.3 bits (72), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 1580 KEVFLTGATSKLGRAIALYLCRKRIRVIMLTMSSERFLKIQREAP 1714
            +   +TGA   +GRA+A+ LC+   RV  L+ ++     + RE P
Sbjct: 10   RRALVTGAGKGIGRAVAVALCKAGARVTALSRTAADLESLVRECP 54


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 346,766,773
Number of extensions: 7643676
Number of successful extensions: 27689
Number of sequences better than 10.0: 17
Number of HSP's gapped: 27633
Number of HSP's successfully gapped: 18
Length of query: 774
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 653
Effective length of database: 67,496,744
Effective search space: 44075373832
Effective search space used: 44075373832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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