ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf49d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome 46 0.43
2dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 46 0.43
3ref|XM_001208990.1| Aspergillus terreus NIH2624 conserved hypoth... 44 1.7
4ref|XR_013742.1| PREDICTED: Macaca mulatta similar to eukaryotic... 44 1.7
5gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome... 44 1.7
6emb|CT828020.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 6.7
7emb|CT833616.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 6.7
8ref|NM_001073860.1| Oryza sativa (japonica cultivar-group) Os12g... 42 6.7
9ref|NM_001060764.1| Oryza sativa (japonica cultivar-group) Os04g... 42 6.7
10gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 6.7
11emb|BX572080.18| Zebrafish DNA sequence from clone DKEY-22N17 in... 42 6.7
12gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 42 6.7
13gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 42 6.7
14gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 42 6.7
15gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 42 6.7
16gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 42 6.7
17gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 42 6.7
18dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
21dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
24gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) ch... 42 6.7
25gb|AF267194.1|AF267194 Pemphigus bursarius microsatellite Pb 16 ... 42 6.7
26dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
27dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
28dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.7
29dbj|AK102484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 6.7
30dbj|AK065014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 6.7
31dbj|AK062248.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 6.7
32gb|AY107051.1| Zea mays PCO135033 mRNA sequence 42 6.7
33emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb... 42 6.7

>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome
          Length = 5631606
 Score = 46.1 bits (23), Expect = 0.43
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 696    ggcggcgtcggcggcggcaacgg 718
              |||||||||||||||||||||||
Sbjct: 403740 ggcggcgtcggcggcggcaacgg 403762



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 445     ccatcgccgccgcgctcgagaag 467
               |||||||||||||||||||||||
Sbjct: 3167921 ccatcgccgccgcgctcgagaag 3167899



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>ref|XM_001208990.1| Aspergillus terreus NIH2624 conserved hypothetical protein
            (ATEG_01625) mRNA, complete cds
          Length = 1074

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 1309 ggaagagctggtttaagagacggttcagcaaagactaa 1346
            ||||||| ||||| ||| |||| |||||||||||||||
Sbjct: 1037 ggaagagttggttcaagcgacgattcagcaaagactaa 1074



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>ref|XR_013742.1| PREDICTED: Macaca mulatta similar to eukaryotic translation
           initiation factor 2C, 1 (LOC712398), mRNA
          Length = 7443

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 696 ggcggcgtcggcggcggcaacggagg 721
           ||||||| ||||||||||||||||||
Sbjct: 9   ggcggcggcggcggcggcaacggagg 34



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>gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome 13, complete sequence
          Length = 211603

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 23    tccttgtcactcttcttgtttc 44
             ||||||||||||||||||||||
Sbjct: 69739 tccttgtcactcttcttgtttc 69718



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>emb|CT828020.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037C17, full
           insert sequence
          Length = 1288

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 701 cgtcggcggcggcaacggagg 721
           |||||||||||||||||||||
Sbjct: 301 cgtcggcggcggcaacggagg 281



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>emb|CT833616.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN125I13, full
           insert sequence
          Length = 1225

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 694 atggcggcgtcggcggcggca 714
           |||||||||||||||||||||
Sbjct: 456 atggcggcgtcggcggcggca 436



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>ref|NM_001073860.1| Oryza sativa (japonica cultivar-group) Os12g0628200 (Os12g0628200)
           mRNA, complete cds
          Length = 1204

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 701 cgtcggcggcggcaacggagg 721
           |||||||||||||||||||||
Sbjct: 901 cgtcggcggcggcaacggagg 921



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>ref|NM_001060764.1| Oryza sativa (japonica cultivar-group) Os04g0672900 (Os04g0672900)
           mRNA, complete cds
          Length = 1645

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 445 ccatcgccgccgcgctcgaga 465
           |||||||||||||||||||||
Sbjct: 456 ccatcgccgccgcgctcgaga 476



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 593     cgaagccgccattgacggcga 613
               |||||||||||||||||||||
Sbjct: 3904033 cgaagccgccattgacggcga 3904053



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>emb|BX572080.18| Zebrafish DNA sequence from clone DKEY-22N17 in linkage group 13,
              complete sequence
          Length = 224120

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1564   ctggtcaaaccatccttttgc 1584
              |||||||||||||||||||||
Sbjct: 139193 ctggtcaaaccatccttttgc 139173



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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 701   cgtcggcggcggcaacggagg 721
             |||||||||||||||||||||
Sbjct: 53883 cgtcggcggcggcaacggagg 53863



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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 696   ggcggcgtcggcggcggcaacggaggtgg 724
             ||||||| ||||||||||||||| |||||
Sbjct: 58275 ggcggcggcggcggcggcaacggcggtgg 58247



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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 445    ccatcgccgccgcgctcgaga 465
              |||||||||||||||||||||
Sbjct: 151040 ccatcgccgccgcgctcgaga 151060



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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   ccatcgccgccgcgctcgaga 465
             |||||||||||||||||||||
Sbjct: 43830 ccatcgccgccgcgctcgaga 43850



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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 697    gcggcgtcggcggcggcaacggagg 721
              |||||| ||||||||||||||||||
Sbjct: 118648 gcggcggcggcggcggcaacggagg 118672



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>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 696   ggcggcgtcggcggcggcaacggag 720
             ||||||| |||||||||||||||||
Sbjct: 38176 ggcggcggcggcggcggcaacggag 38200



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 701      cgtcggcggcggcaacggagg 721
                |||||||||||||||||||||
Sbjct: 26928916 cgtcggcggcggcaacggagg 26928896



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 445      ccatcgccgccgcgctcgaga 465
                |||||||||||||||||||||
Sbjct: 22891323 ccatcgccgccgcgctcgaga 22891343



 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 697      gcggcgtcggcggcggcaacggagg 721
                |||||| ||||||||||||||||||
Sbjct: 24703840 gcggcggcggcggcggcaacggagg 24703816



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 696      ggcggcgtcggcggcggcaacggag 720
                ||||||| |||||||||||||||||
Sbjct: 15184477 ggcggcggcggcggcggcaacggag 15184501



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 694     atggcggcgtcggcggcggcaacgg 718
               |||||||||||||||||||| ||||
Sbjct: 4577035 atggcggcgtcggcggcggcgacgg 4577011



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 697      gcggcgtcggcggcggcaacggaggtgga 725
                |||||| |||||||||| |||||||||||
Sbjct: 27666536 gcggcggcggcggcggccacggaggtgga 27666508



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 696      ggcggcgtcggcggcggcaacggaggtgg 724
                ||||||| ||||||||||||||| |||||
Sbjct: 32776142 ggcggcggcggcggcggcaacggcggtgg 32776170



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>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 696   ggcggcgtcggcggcggcaacggag 720
             ||||||| |||||||||||||||||
Sbjct: 93090 ggcggcggcggcggcggcaacggag 93114



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>gb|AF267194.1|AF267194 Pemphigus bursarius microsatellite Pb 16 sequence
          Length = 222

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 694 atggcggcgtcggcggcggcaacgg 718
           ||||||||| |||||||||||||||
Sbjct: 23  atggcggcggcggcggcggcaacgg 47



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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0135D07
          Length = 170587

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 697    gcggcgtcggcggcggcaacggaggtgga 725
              |||||| |||||||||| |||||||||||
Sbjct: 146205 gcggcggcggcggcggccacggaggtgga 146177



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>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090D06
          Length = 174500

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 694   atggcggcgtcggcggcggcaacgg 718
             |||||||||||||||||||| ||||
Sbjct: 64399 atggcggcgtcggcggcggcgacgg 64375



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>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0005A04
          Length = 140723

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 697   gcggcgtcggcggcggcaacggaggtgga 725
             |||||| |||||||||| |||||||||||
Sbjct: 52402 gcggcggcggcggcggccacggaggtgga 52374



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>dbj|AK102484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L24, full
           insert sequence
          Length = 1205

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 701 cgtcggcggcggcaacggagg 721
           |||||||||||||||||||||
Sbjct: 305 cgtcggcggcggcaacggagg 285



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>dbj|AK065014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F07, full
           insert sequence
          Length = 1646

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 445 ccatcgccgccgcgctcgaga 465
           |||||||||||||||||||||
Sbjct: 457 ccatcgccgccgcgctcgaga 477



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>dbj|AK062248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F09, full
           insert sequence
          Length = 1573

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 445 ccatcgccgccgcgctcgaga 465
           |||||||||||||||||||||
Sbjct: 368 ccatcgccgccgcgctcgaga 388



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>gb|AY107051.1| Zea mays PCO135033 mRNA sequence
          Length = 1850

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1107 atcatggaggagcacgccagg 1127
            |||||||||||||||||||||
Sbjct: 872  atcatggaggagcacgccagg 892



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>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 142370

 Score = 42.1 bits (21), Expect = 6.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 701    cgtcggcggcggcaacggagg 721
              |||||||||||||||||||||
Sbjct: 132883 cgtcggcggcggcaacggagg 132863


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 230,264,717
Number of extensions: 11389485
Number of successful extensions: 211490
Number of sequences better than 10.0: 33
Number of HSP's gapped: 211490
Number of HSP's successfully gapped: 34
Length of query: 1759
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1736
Effective length of database: 18,503,978,556
Effective search space: 32122906773216
Effective search space used: 32122906773216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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