| Clone Name | FLbaf49d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 46.1 bits (23), Expect = 0.43 Identities = 23/23 (100%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacgg 718 ||||||||||||||||||||||| Sbjct: 403740 ggcggcgtcggcggcggcaacgg 403762
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 46.1 bits (23), Expect = 0.43 Identities = 23/23 (100%) Strand = Plus / Minus Query: 445 ccatcgccgccgcgctcgagaag 467 ||||||||||||||||||||||| Sbjct: 3167921 ccatcgccgccgcgctcgagaag 3167899
>ref|XM_001208990.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_01625) mRNA, complete cds Length = 1074 Score = 44.1 bits (22), Expect = 1.7 Identities = 34/38 (89%) Strand = Plus / Plus Query: 1309 ggaagagctggtttaagagacggttcagcaaagactaa 1346 ||||||| ||||| ||| |||| ||||||||||||||| Sbjct: 1037 ggaagagttggttcaagcgacgattcagcaaagactaa 1074
>ref|XR_013742.1| PREDICTED: Macaca mulatta similar to eukaryotic translation initiation factor 2C, 1 (LOC712398), mRNA Length = 7443 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacggagg 721 ||||||| |||||||||||||||||| Sbjct: 9 ggcggcggcggcggcggcaacggagg 34
>gb|AC154521.2| Mus musculus BAC clone RP23-473O6 from chromosome 13, complete sequence Length = 211603 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tccttgtcactcttcttgtttc 44 |||||||||||||||||||||| Sbjct: 69739 tccttgtcactcttcttgtttc 69718
>emb|CT828020.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037C17, full insert sequence Length = 1288 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 301 cgtcggcggcggcaacggagg 281
>emb|CT833616.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN125I13, full insert sequence Length = 1225 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 694 atggcggcgtcggcggcggca 714 ||||||||||||||||||||| Sbjct: 456 atggcggcgtcggcggcggca 436
>ref|NM_001073860.1| Oryza sativa (japonica cultivar-group) Os12g0628200 (Os12g0628200) mRNA, complete cds Length = 1204 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 901 cgtcggcggcggcaacggagg 921
>ref|NM_001060764.1| Oryza sativa (japonica cultivar-group) Os04g0672900 (Os04g0672900) mRNA, complete cds Length = 1645 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 456 ccatcgccgccgcgctcgaga 476
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 cgaagccgccattgacggcga 613 ||||||||||||||||||||| Sbjct: 3904033 cgaagccgccattgacggcga 3904053
>emb|BX572080.18| Zebrafish DNA sequence from clone DKEY-22N17 in linkage group 13, complete sequence Length = 224120 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1564 ctggtcaaaccatccttttgc 1584 ||||||||||||||||||||| Sbjct: 139193 ctggtcaaaccatccttttgc 139173
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 53883 cgtcggcggcggcaacggagg 53863
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 42.1 bits (21), Expect = 6.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 696 ggcggcgtcggcggcggcaacggaggtgg 724 ||||||| ||||||||||||||| ||||| Sbjct: 58275 ggcggcggcggcggcggcaacggcggtgg 58247
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0088K21, complete sequence Length = 153239 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 151040 ccatcgccgccgcgctcgaga 151060
>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0068E24, complete sequence Length = 141492 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 43830 ccatcgccgccgcgctcgaga 43850
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 697 gcggcgtcggcggcggcaacggagg 721 |||||| |||||||||||||||||| Sbjct: 118648 gcggcggcggcggcggcaacggagg 118672
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacggag 720 ||||||| ||||||||||||||||| Sbjct: 38176 ggcggcggcggcggcggcaacggag 38200
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 26928916 cgtcggcggcggcaacggagg 26928896
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 22891323 ccatcgccgccgcgctcgaga 22891343 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 697 gcggcgtcggcggcggcaacggagg 721 |||||| |||||||||||||||||| Sbjct: 24703840 gcggcggcggcggcggcaacggagg 24703816
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacggag 720 ||||||| ||||||||||||||||| Sbjct: 15184477 ggcggcggcggcggcggcaacggag 15184501
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 694 atggcggcgtcggcggcggcaacgg 718 |||||||||||||||||||| |||| Sbjct: 4577035 atggcggcgtcggcggcggcgacgg 4577011
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 697 gcggcgtcggcggcggcaacggaggtgga 725 |||||| |||||||||| ||||||||||| Sbjct: 27666536 gcggcggcggcggcggccacggaggtgga 27666508
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 6.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacggaggtgg 724 ||||||| ||||||||||||||| ||||| Sbjct: 32776142 ggcggcggcggcggcggcaacggcggtgg 32776170
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 696 ggcggcgtcggcggcggcaacggag 720 ||||||| ||||||||||||||||| Sbjct: 93090 ggcggcggcggcggcggcaacggag 93114
>gb|AF267194.1|AF267194 Pemphigus bursarius microsatellite Pb 16 sequence Length = 222 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 694 atggcggcgtcggcggcggcaacgg 718 ||||||||| ||||||||||||||| Sbjct: 23 atggcggcggcggcggcggcaacgg 47
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 42.1 bits (21), Expect = 6.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 697 gcggcgtcggcggcggcaacggaggtgga 725 |||||| |||||||||| ||||||||||| Sbjct: 146205 gcggcggcggcggcggccacggaggtgga 146177
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090D06 Length = 174500 Score = 42.1 bits (21), Expect = 6.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 694 atggcggcgtcggcggcggcaacgg 718 |||||||||||||||||||| |||| Sbjct: 64399 atggcggcgtcggcggcggcgacgg 64375
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 42.1 bits (21), Expect = 6.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 697 gcggcgtcggcggcggcaacggaggtgga 725 |||||| |||||||||| ||||||||||| Sbjct: 52402 gcggcggcggcggcggccacggaggtgga 52374
>dbj|AK102484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L24, full insert sequence Length = 1205 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 305 cgtcggcggcggcaacggagg 285
>dbj|AK065014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F07, full insert sequence Length = 1646 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 457 ccatcgccgccgcgctcgaga 477
>dbj|AK062248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F09, full insert sequence Length = 1573 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 ccatcgccgccgcgctcgaga 465 ||||||||||||||||||||| Sbjct: 368 ccatcgccgccgcgctcgaga 388
>gb|AY107051.1| Zea mays PCO135033 mRNA sequence Length = 1850 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1107 atcatggaggagcacgccagg 1127 ||||||||||||||||||||| Sbjct: 872 atcatggaggagcacgccagg 892
>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142370 Score = 42.1 bits (21), Expect = 6.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 cgtcggcggcggcaacggagg 721 ||||||||||||||||||||| Sbjct: 132883 cgtcggcggcggcaacggagg 132863 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 230,264,717 Number of extensions: 11389485 Number of successful extensions: 211490 Number of sequences better than 10.0: 33 Number of HSP's gapped: 211490 Number of HSP's successfully gapped: 34 Length of query: 1759 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1736 Effective length of database: 18,503,978,556 Effective search space: 32122906773216 Effective search space used: 32122906773216 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)