ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf48p02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008922.1| Triticum aestivum clone wyr1c.pk003.b6:fis, full insert mRNA sequence Length = 984 Score = 1017 bits (513), Expect = 0.0 Identities = 723/793 (91%) Strand = Plus / Plus Query: 55 ggtactgatgagcgccaacatggccatggcggcaacggcgatgcggcggagtggaagaag 114 |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| Sbjct: 8 ggtactgatgagcgccaatatggccatggcggtgacggcgacgcggcggagtggaagaag 67 Query: 115 gtggcggagctgagggaggtcgtggaggcacaggacccctctgccaaggaggaggatgat 174 ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 68 gtggcggagctcagggagttcgttgaggcacaggacccctctgccaaggaggaggatgac 127 Query: 175 ttcgcgctacggcggttcctccgtgcccgggaccacaacatcaacaaggcgtcggcgatg 234 |||||||| ||||||||||| || |||||||||||||||||||||||||| |||| |||| Sbjct: 128 ttcgcgctgcggcggttcctgcgcgcccgggaccacaacatcaacaaggcatcggtgatg 187 Query: 235 cttctccggtaccttgcctggaagcgcgtcgccaaaccccatggcttcatctcggacgac 294 ||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||| Sbjct: 188 cttctccggtatcttgcctggaagcgtgtcaccaagccccatggcttcatctccgacgac 247 Query: 295 gaggtgcgcggcgagatcgcaaagggaagggaccgcttgcagggttttgaccgtcttggt 354 ||||||| |||||||||||||||||||| |||||| || |||||||||||||||||| Sbjct: 248 aaggtgcgtggcgagatcgcaaagggaagagaccgccaccaaggttttgaccgtcttggt 307 Query: 355 cgccccatgtcgtatctctatggtgggcgtcacttccccgtccggcgtgaccacgaagat 414 ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 308 cgccccatgtcatatctctatggtgggcgccacttccctgtccggcgtgatcacgaagat 367 Query: 415 ctcaagcgctacgtcgcctatgttcttgacaaaatctgcacaaggttgccggcagggcaa 474 ||||||||||| || | ||||||| |||||||||||||||| | | ||||||||||||| Sbjct: 368 ctcaagcgctatgtggtctatgtttttgacaaaatctgcaccaagctgccggcagggcag 427 Query: 475 gagaagtttgcagcagtgattgacctaaagggatgggggtacgcgaactgcgacatccgg 534 ||||||||||| || ||||| ||||| |||||||||||||| || |||||||||||||| Sbjct: 428 gagaagtttgcggcggtgatagacctgaagggatgggggtatgcaaactgcgacatccgt 487 Query: 535 gggtacctagcaggactggatatcatgcagagctattatccggagaggctgggccgcgtg 594 |||||||| ||||| ||||| ||||||||||||||||| || ||| |||||||||||||| Sbjct: 488 gggtacctggcagggctggacatcatgcagagctattacccagagcggctgggccgcgtg 547 Query: 595 ttcctgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatc 654 ||||||||||| || |||||| |||||||||||||||||||||| ||||||||||| ||| Sbjct: 548 ttcctgatccacgtgccctacctattcatggctgcgtggaagattgtgtaccccttaatc 607 Query: 655 gacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggacctcgatgccacgctt 714 || ||||||||||| |||||||||||||||||||| |||| |||||| || ||||| ||| Sbjct: 608 gatgacaagaccaagaagaagtttgtgttcgtcgctgatagggaccttgacgccacactt 667 Query: 715 cgagacgccatcgacgagtcccagctccctgaggagtacggtggcaatctcaagctccag 774 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 668 cgagacgccatcgacgagtcccagctccctgaggagtacggtggcaagctcaagctctag 727 Query: 775 gcctacaacagttccccatagtccaagtccatctgatgatcgatcgatagtgatcaccac 834 |||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||| Sbjct: 728 gcctacaacagttcaccatcgtccaagtccatctgatgatcaatcgatagtgatgaccat 787 Query: 835 ctgacatatgcaa 847 |||||||||||| Sbjct: 788 gtgacatatgcaa 800
>gb|BT009002.1| Triticum aestivum clone wdk2c.pk017.c19:fis, full insert mRNA sequence Length = 1040 Score = 511 bits (258), Expect = e-141 Identities = 603/718 (83%) Strand = Plus / Plus Query: 97 gcggcggagtggaagaaggtggcggagctgagggaggtcgtggaggcacaggacccctct 156 |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| || Sbjct: 88 gcggcggagtggaagaaggtggcggagctgagggccgtcgtcgaggcccaggaccccgct 147 Query: 157 gccaaggaggaggatgatttcgcgctacggcggttcctccgtgcccgggaccacaacatc 216 ||||||||||||||||| || |||| || || ||||| ||||||||||||||||||||| Sbjct: 148 gccaaggaggaggatgacttttcgctgcgacgattcctgcgtgcccgggaccacaacatc 207 Query: 217 aacaaggcgtcggcgatgcttctccggtaccttgcctggaagcgcgtcgccaaaccccat 276 |||||||||||| ||||| |||| ||||||| |||||| ||| || ||||| |||||| Sbjct: 208 ggcaaggcgtcggccatgctcctccagtacctttcctggaggcgtgttgccaagccccat 267 Query: 277 ggcttcatctcggacgacgaggtgcgcggcgagatcgcaaagggaagggaccgcttgcag 336 |||| |||||||| |||||||||||||| |||||| ||||||| || | |||| ||||| Sbjct: 268 ggctccatctcggccgacgaggtgcgcgacgagattgcaaaggatagagtccgcatgcag 327 Query: 337 ggttttgaccgtcttggtcgccccatgtcgtatctctatggtgggcgtcacttccccgtc 396 || || |||||||| |||||||||| ||||||||||||||| || || ||||| | | Sbjct: 328 ggcttcgaccgtctcaatcgccccatggcgtatctctatggtgcacgacatttccctgcc 387 Query: 397 cggcgtgaccacgaagatctcaagcgctacgtcgcctatgttcttgacaaaatctgcaca 456 |||||||||| || || |||||||||| ||| ||||||| ||||| ||||| ||||| Sbjct: 388 cggcgtgaccttgacgagttcaagcgctatgtcacctatgtccttgataaaatttgcact 447 Query: 457 aggttgccggcagggcaagagaagtttgcagcagtgattgacctaaagggatgggggtac 516 |||||||| | |||||||||||||||||||| ||||| ||| | ||||| ||||| || Sbjct: 448 aggttgcctgtggggcaagagaagtttgcagcggtgatagacatgaaggggtggggatat 507 Query: 517 gcgaactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccg 576 ||||| || ||||||||||| ||| | || | | |||| ||||||||| |||| || ||| Sbjct: 508 gcgaattgtgacatccggggttacgtggcggcattggaaatcatgcagggctactacccg 567 Query: 577 gagaggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaag 636 ||| | || ||||| |||||||||||||| || |||||||| |||||||| || |||||| Sbjct: 568 gagcgccttggccgggtgttcctgatccacgtgccctacatgttcatggcggcatggaag 627 Query: 637 atggtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataag 696 ||||||||||| || || |||||| ||| |||||||||||||||||||| |||||| Sbjct: 628 atggtgtacccgttcattgacgaccgaacccggaagaagtttgtgttcgtcgctgataag 687 Query: 697 gacctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggt 756 |||||| | ||||||| | | |||||| ||||||||||||||||| |||||||||||| Sbjct: 688 gacctcaaatccacgctccagggcgccattgacgagtcccagctccccgaggagtacggt 747 Query: 757 ggcaatctcaagctccaggcctacaacagttccccatagtccaagtccatctgatgat 814 ||||| || ||||| ||| |||||||| ||| | |||||||| || |||||||||| Sbjct: 748 ggcaagctgaagctttagggctacaacaattcactgtagtccaaatcgatctgatgat 805 Score = 63.9 bits (32), Expect = 1e-06 Identities = 35/36 (97%) Strand = Plus / Plus Query: 719 acgccatcgacgagtcccagctccctgaggagtacg 754 ||||||||||||||||||||||||| |||||||||| Sbjct: 858 acgccatcgacgagtcccagctccccgaggagtacg 893
>ref|NM_001058443.1| Oryza sativa (japonica cultivar-group) Os03g0850700 (Os03g0850700) mRNA, complete cds Length = 1196 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Plus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 626 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 685 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 686 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 745 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 746 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 805 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 806 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 865 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 866 aagctcaagctc 877 Score = 67.9 bits (34), Expect = 7e-08 Identities = 118/146 (80%) Strand = Plus / Plus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgagggaggtcgtggaggcacaggac 150 ||||||| | ||||||||||||||||||| |||||||| | ||||| || || |||||| Sbjct: 185 ggcgatgtgacggagtggaagaaggtggccgagctgagagccgtcgtcgaagcccaggac 244 Query: 151 ccctctgccaaggaggaggatgatttcgcgctacggcggttcctccgtgcccgggaccac 210 || | |||||||||||| || | | ||| || |||||||| || || | |||||| Sbjct: 245 cctgcatgcaaggaggaggacgactaccagctgcgccggttcctgcgcgcgagagaccac 304 Query: 211 aacatcaacaaggcgtcggcgatgct 236 |||||| |||||||||||||||||| Sbjct: 305 aacatcggcaaggcgtcggcgatgct 330
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Minus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 35596782 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 35596723 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 35596722 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 35596663 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 35596662 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 35596603 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 35596602 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 35596543 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 35596542 aagctcaagctc 35596531 Score = 52.0 bits (26), Expect = 0.004 Identities = 35/38 (92%) Strand = Plus / Minus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgag 128 ||||||| | ||||||||||||||||||| |||||||| Sbjct: 35600627 ggcgatgtgacggagtggaagaaggtggccgagctgag 35600590 Score = 48.1 bits (24), Expect = 0.067 Identities = 30/32 (93%) Strand = Plus / Minus Query: 205 gaccacaacatcaacaaggcgtcggcgatgct 236 |||||||||||| |||||||||||||||||| Sbjct: 35597109 gaccacaacatcggcaaggcgtcggcgatgct 35597078
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Minus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 39673 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 39614 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 39613 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 39554 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 39553 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 39494 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 39493 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 39434 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 39433 aagctcaagctc 39422 Score = 52.0 bits (26), Expect = 0.004 Identities = 35/38 (92%) Strand = Plus / Minus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgag 128 ||||||| | ||||||||||||||||||| |||||||| Sbjct: 43518 ggcgatgtgacggagtggaagaaggtggccgagctgag 43481 Score = 48.1 bits (24), Expect = 0.067 Identities = 30/32 (93%) Strand = Plus / Minus Query: 205 gaccacaacatcaacaaggcgtcggcgatgct 236 |||||||||||| |||||||||||||||||| Sbjct: 40000 gaccacaacatcggcaaggcgtcggcgatgct 39969
>dbj|AK099525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030L21, full insert sequence Length = 1099 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Plus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 552 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 611 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 612 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 671 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 672 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 731 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 732 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 791 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 792 aagctcaagctc 803 Score = 67.9 bits (34), Expect = 7e-08 Identities = 118/146 (80%) Strand = Plus / Plus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgagggaggtcgtggaggcacaggac 150 ||||||| | ||||||||||||||||||| |||||||| | ||||| || || |||||| Sbjct: 111 ggcgatgtgacggagtggaagaaggtggccgagctgagagccgtcgtcgaagcccaggac 170 Query: 151 ccctctgccaaggaggaggatgatttcgcgctacggcggttcctccgtgcccgggaccac 210 || | |||||||||||| || | | ||| || |||||||| || || | |||||| Sbjct: 171 cctgcatgcaaggaggaggacgactaccagctgcgccggttcctgcgcgcgagagaccac 230 Query: 211 aacatcaacaaggcgtcggcgatgct 236 |||||| |||||||||||||||||| Sbjct: 231 aacatcggcaaggcgtcggcgatgct 256
>dbj|AK062083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G01, full insert sequence Length = 1196 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Plus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 626 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 685 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 686 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 745 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 746 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 805 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 806 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 865 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 866 aagctcaagctc 877 Score = 67.9 bits (34), Expect = 7e-08 Identities = 118/146 (80%) Strand = Plus / Plus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgagggaggtcgtggaggcacaggac 150 ||||||| | ||||||||||||||||||| |||||||| | ||||| || || |||||| Sbjct: 185 ggcgatgtgacggagtggaagaaggtggccgagctgagagccgtcgtcgaagcccaggac 244 Query: 151 ccctctgccaaggaggaggatgatttcgcgctacggcggttcctccgtgcccgggaccac 210 || | |||||||||||| || | | ||| || |||||||| || || | |||||| Sbjct: 245 cctgcatgcaaggaggaggacgactaccagctgcgccggttcctgcgcgcgagagaccac 304 Query: 211 aacatcaacaaggcgtcggcgatgct 236 |||||| |||||||||||||||||| Sbjct: 305 aacatcggcaaggcgtcggcgatgct 330
>dbj|AK061542.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H09, full insert sequence Length = 1013 Score = 174 bits (88), Expect = 4e-40 Identities = 211/252 (83%) Strand = Plus / Plus Query: 520 aactgcgacatccgggggtacctagcaggactggatatcatgcagagctattatccggag 579 |||||||||||||| | |||| | || | ||||| |||||||||| ||| || |||||| Sbjct: 544 aactgcgacatccgcgcgtacgtggcggcgctggagatcatgcagaactactacccggag 603 Query: 580 aggctgggccgcgtgttcctgatccatgtaccctacatattcatggctgcgtggaagatg 639 |||||||| | |||||| |||||||||| |||||| | |||||||| || |||||||| Sbjct: 604 aggctggggagggtgttcttgatccatgtcccctacgtgttcatggcggcctggaagatc 663 Query: 640 gtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggac 699 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct: 664 atctaccccttcatcgacgacaacaccaagaagaagttcgtcttcgtcgccgacaaggac 723 Query: 700 ctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgaggagtacggtggc 759 ||| | |||||||| || |||||||||||||| ||| | ||| | ||||| ||||| ||| Sbjct: 724 ctccacgccacgctccgcgacgccatcgacgactccaacctcgccgaggactacggcggc 783 Query: 760 aatctcaagctc 771 || ||||||||| Sbjct: 784 aagctcaagctc 795 Score = 67.9 bits (34), Expect = 7e-08 Identities = 118/146 (80%) Strand = Plus / Plus Query: 91 ggcgatgcggcggagtggaagaaggtggcggagctgagggaggtcgtggaggcacaggac 150 ||||||| | ||||||||||||||||||| |||||||| | ||||| || || |||||| Sbjct: 103 ggcgatgtgacggagtggaagaaggtggccgagctgagagccgtcgtcgaagcccaggac 162 Query: 151 ccctctgccaaggaggaggatgatttcgcgctacggcggttcctccgtgcccgggaccac 210 || | |||||||||||| || | | ||| || |||||||| || || | |||||| Sbjct: 163 cctgcatgcaaggaggaggacgactaccagctgcgccggttcctgcgcgcgagagaccac 222 Query: 211 aacatcaacaaggcgtcggcgatgct 236 |||||| |||||||||||||||||| Sbjct: 223 aacatcggcaaggcgtcggcgatgct 248
>gb|AY111686.1| Zea mays CL6058_1 mRNA sequence Length = 650 Score = 103 bits (52), Expect = 1e-18 Identities = 211/264 (79%) Strand = Plus / Minus Query: 508 tgggggtacgcgaactgcgacatccgggggtacctagcaggactggatatcatgcagagc 567 ||||| ||||| |||||||||||||| || ||||| || | || || |||||||||||| Sbjct: 356 tggggctacgccaactgcgacatccgaggctacctggcggcgctcgacatcatgcagagc 297 Query: 568 tattatccggagaggctgggccgcgtgttcctgatccatgtaccctacatattcatggct 627 || || |||||| | || | |||||| ||||| |||| || |||||| | |||||||| Sbjct: 296 tactacccggagcgcctcgcccgcgtcttcctcgtccacgtgccctacgtcttcatggcc 237 Query: 628 gcgtggaagatggtgtacccctttatcgacgacaagaccaaaaagaagtttgtgttcgtc 687 || |||||||| || |||||||| ||||||||||| ||||| |||||| | || ||||| Sbjct: 236 gcctggaagatcgtctaccccttcatcgacgacaacaccaagaagaaggtcgtcttcgtg 177 Query: 688 gccgataaggacctcgatgccacgcttcgagacgccatcgacgagtcccagctccctgag 747 | || |||||||| || ||||| || || ||||||||||| |||||||| || ||| Sbjct: 176 ccggacaaggacctggacaggacgctccgcgaggccatcgacgactcccagctgccggag 117 Query: 748 gagtacggtggcaatctcaagctc 771 || |||||||| ||||||||| Sbjct: 116 atctatggtggcaagctcaagctc 93
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 93.7 bits (47), Expect = 1e-15 Identities = 83/95 (87%) Strand = Plus / Plus Query: 207 ccacaacatcaacaaggcgtcggcgatgcttctccggtaccttgcctggaagcgcgtcgc 266 |||||||||| |||||||||||||||||| ||| |||||||||||||||||| | || Sbjct: 405784 ccacaacatcggcaaggcgtcggcgatgctcctcaagtaccttgcctggaagcgggccgt 405843 Query: 267 caaaccccatggcttcatctcggacgacgaggtgc 301 ||| || | |||||||||||| ||||||||||||| Sbjct: 405844 caagccgcgtggcttcatctccgacgacgaggtgc 405878 Score = 56.0 bits (28), Expect = 3e-04 Identities = 121/152 (79%) Strand = Plus / Plus Query: 592 gtgttcctgatccatgtaccctacatattcatggctgcgtggaagatggtgtaccccttt 651 ||||||||| |||| ||||||| | | |||||||| || |||||| | | || | | ||| Sbjct: 406287 gtgttcctggtccacgtacccttcgtgttcatggcggcatggaagcttgggtgcacgttt 406346 Query: 652 atcgacgacaagaccaaaaagaagtttgtgttcgtcgccgataaggacctcgatgccacg 711 |||| |||| ||||| ||||||||||||||| ||| |||| ||||||| || ||| Sbjct: 406347 gtcgataacaacaccaagaagaagtttgtgttcatcgatgatagggacctcagtggcaca 406406 Query: 712 cttcgagacgccatcgacgagtcccagctccc 743 || ||||||| |||| |||||||||||||| Sbjct: 406407 ctccgagacgttgtcgatgagtcccagctccc 406438
>ref|NM_001051800.1| Oryza sativa (japonica cultivar-group) Os01g0926800 (Os01g0926800) mRNA, complete cds Length = 1116 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 596 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 654
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 40640120 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 40640178
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 82098 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 82156
>dbj|AK121373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C08, full insert sequence Length = 1034 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 628 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 686
>gb|AY110277.1| Zea mays CL615_-1 mRNA sequence Length = 982 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||| || |||||||| |||||| |||||||||||| | |||||||| |||||| Sbjct: 627 tgatccacgtgccctacatcttcatgaaggcgtggaagatgatctaccccttcatcgac 685
>gb|U88068.1|OSU88068 Oryza sativa sec14 like protein mRNA, complete cds Length = 1142 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 602 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 660
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 599 tgatccatgtaccctacatattcatggctgcgtggaagatggtgtacccctttatcgac 657 ||||||||||||||||||| |||||| || ||||||||| | ||||| || |||||| Sbjct: 120135 tgatccatgtaccctacatgttcatgaaggcctggaagatgatctaccctttcatcgac 120193
>emb|AM114193.2| Uncultured methanogenic archaeon RC-I complete genome Length = 3179916 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 720 cgccatcgacgagtcccagctc 741 |||||||||||||||||||||| Sbjct: 2930016 cgccatcgacgagtcccagctc 2929995
>emb|AL954223.1| Pan troglodytes chromosome 22 clone PTB-187O16 map q21.2, complete sequence Length = 165877 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 735 ccagctccctgaggagtacggtggca 760 |||||||| ||||||||||||||||| Sbjct: 31325 ccagctccttgaggagtacggtggca 31300
>emb|AL954222.1| Pan troglodytes chromosome 22 clone q21.2, complete sequence Length = 208827 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 735 ccagctccctgaggagtacggtggca 760 |||||||| ||||||||||||||||| Sbjct: 169082 ccagctccttgaggagtacggtggca 169057
>emb|AL023835.1|CEY37A1B Caenorhabditis elegans YAC Y37A1B, complete sequence Length = 99083 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 667 aaaaagaagtttgtgttcgtcg 688 |||||||||||||||||||||| Sbjct: 61450 aaaaagaagtttgtgttcgtcg 61429
>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 Length = 340000 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 735 ccagctccctgaggagtacggtggca 760 |||||||| ||||||||||||||||| Sbjct: 173941 ccagctccttgaggagtacggtggca 173916
>gb|AF064858.2|AF064858 Homo sapiens chromosome 21 clone BAC 28F9, map 21q22.3, complete sequence Length = 194769 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 735 ccagctccctgaggagtacggtggca 760 |||||||| ||||||||||||||||| Sbjct: 61225 ccagctccttgaggagtacggtggca 61200
>ref|NM_001044535.1| Sus scrofa proteasome 26S subunit non-ATPase 4 (PSMD4), mRNA gb|AY704418.1| Sus scrofa proteasome 26S subunit non-ATPase 4 (PSMD4) mRNA, complete cds Length = 1152 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ctgccaaggaggaggatgatt 175 ||||||||||||||||||||| Sbjct: 972 ctgccaaggaggaggatgatt 992
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 992 ttgtaactgtttttcttctaataaa 1016 |||||| |||||||||||||||||| Sbjct: 239589 ttgtaaatgtttttcttctaataaa 239613
>emb|AL603904.5| Human DNA sequence from clone RP11-244A13 on chromosome 6, complete sequence Length = 99479 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1000 gtttttcttctaataaaaaga 1020 ||||||||||||||||||||| Sbjct: 75389 gtttttcttctaataaaaaga 75369
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 cccgtccggcgtgaccacgaagatc 415 |||||||||||||| |||||||||| Sbjct: 927290 cccgtccggcgtgatcacgaagatc 927266
>emb|BX816556.1|CNS0AEHC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH55ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1354 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 810 atgatcgatcgatagtgatcaccac 834 |||||| |||||||||||||||||| Sbjct: 738 atgatccatcgatagtgatcaccac 762 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 156,907,886 Number of extensions: 8054507 Number of successful extensions: 156472 Number of sequences better than 10.0: 28 Number of HSP's gapped: 156464 Number of HSP's successfully gapped: 42 Length of query: 1097 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1074 Effective length of database: 18,503,978,556 Effective search space: 19873272969144 Effective search space used: 19873272969144 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
