ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51j23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001055477.1| Oryza sativa (japonica cultivar-group) Os03g0144000 (Os03g0144000) mRNA, complete cds Length = 3176 Score = 404 bits (204), Expect = e-109 Identities = 497/593 (83%), Gaps = 15/593 (2%) Strand = Plus / Plus Query: 1613 gttgtctggcagcctgtgtatacttttctcatacaaaccctgaagacatatatgattgct 1672 ||||||||||| ||||| ||||||| ||| |||||| || ||||||| | |||||||||| Sbjct: 1365 gttgtctggcaacctgtatatacttctcttatacaagccttgaagacttttatgattgct 1424 Query: 1673 gctgctgcttcaagtgttgcttggaatgagttggaagccttcctacttgagagtattttc 1732 ||| || ||||||||| |||||||| |||||| |||| |||| ||||||||| ||||| Sbjct: 1425 gcttcttcttcaagtgctgcttggagtgagtttgaagtcttcttacttgagaaccttttc 1484 Query: 1733 catccccatttcctttgcttggaaattttaacagaactatggtgtttcttcacgcgccat 1792 ||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || Sbjct: 1485 catccccatttcctttgcttggaaattctaacagagctatggtgtttcttcatgcattat 1544 Query: 1793 gctgaaaatgaaacttcgacttatttaatcaatcaactattccttctgttaaagactgta 1852 |||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||| || Sbjct: 1545 gctgaagctgaaacttcaacctatttaatcaatcagctatttcttctgttaaagactcta 1604 Query: 1853 gcgtcatcagagaaagttcttgcacctctcagtgctttccggaaggttgcacgtgcattc 1912 |||||| ||||| ||||||||||||||||||||||| | ||||| |||| ||||||| Sbjct: 1605 gcgtcaccagaggaagttcttgcacctctcagtgctctgaggaagcttgctcgtgcatca 1664 Query: 1913 tgtatcatcttgagtgacgcatcatgtgcaactgttgatcaaatttatacctgtgtgctg 1972 |||| ||||||||| | ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 1665 tgtaacatcttgagctatgcatcgtctgcaacaattgatcaaatttatacc---atgctg 1721 Query: 1973 aatgatcacaactcttccaagtcatcagtcctgcacttagcgttgttgatggaaggattt 2032 |||||| | ||||||||||||||| || || ||||||| ||||||||||||||||| Sbjct: 1722 aatgat---agctcttccaagtcatcgatcttgtacttagcactgttgatggaaggattt 1778 Query: 2033 cctttcgattcattatcagatggtataaaggtgcatgctgtaaaccaactgttcacttct 2092 ||||| ||||||||||| |||| |||||| |||||||| || ||||||||||||| Sbjct: 1779 ccttttgattcattatctcgtggtgtaaaggaacatgctgtgaagacactgttcacttct 1838 Query: 2093 tttgtcgggtatcta------cagagctgcttgaagaatcatggtgcaattgatttgcca 2146 |||| ||||||||| |||| || ||| ||||||||||| | ||| | |||||| Sbjct: 1839 tttgctgggtatctacagaatcagaactacttcaagaatcatggagaaatcaacttgcca 1898 Query: 2147 a---cttctagttcgggggtaataggtcttcctgtacatgctctagcctctgc 2196 | ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 1899 acttcttctagttcgggcataatagggtttcctgtacatgctctagcctctgc 1951 Score = 389 bits (196), Expect = e-104 Identities = 627/770 (81%), Gaps = 3/770 (0%) Strand = Plus / Plus Query: 539 tttatttcggaattgctaacactgatggaaagctcaatagttgacaagacaattaatgga 598 ||||||| ||| || ||||| |||| |||||||||||| ||||||||| | | ||| Sbjct: 297 tttattttggagttactaaccctgactgaaagctcaatacttgacaagaaactc---gga 353 Query: 599 actgcagcacatgttgccaaggttgcacctgtttttctggatgaaaccatcaaactgtgc 658 ||| ||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 354 actacaggacatgttgctaaggctgcacctgtttttctagatgaaaccatcaaactgtgc 413 Query: 659 agagcatattgtgaggctgcaaagtcagatatcggcagaactagcatgcctacagaagag 718 |||| || | ||||||||||| ||||| ||| || |||||||||| ||||||| Sbjct: 414 agagtgtactccgaggctgcaaaatcagaccagtgcataatgagcatgcctaaagaagag 473 Query: 719 acaactgtgaaacatgaagtaccagatcttacaagcaacacggtcaggattacagcatgc 778 ||||||| | |||| ||| |||||||||| ||||||| | | ||||||||||||| Sbjct: 474 acaactgaggaacacaaagagacagatcttactagcaacattgcccagattacagcatgc 533 Query: 779 actattcagaccttgtgtaaaataggaacatacgcagcatcgaatggtggaagccaggtg 838 ||||||||| ||||||||||||||||||| | |||||||| | |||||||||||||||| Sbjct: 534 actattcagtccttgtgtaaaataggaacccatgcagcatccagtggtggaagccaggtg 593 Query: 839 gctttactgaatgtatcatggaagggtgtagtttccttactgcaacttggcaaagggctg 898 |||||||||| ||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 594 attttactgaatatatcatggaagggcataatttccttactgcagcttggtaaagggatg 653 Query: 899 atagaagtaaaagtaagtatcagtgatatcatttcaactcttatctcccttgtcattgaa 958 |||||| ||| || | | | || || || |||| || || |||||| ||| ||||||| Sbjct: 654 gtagaagaaaaggtgaatgtaagagagattattttaattcctatctcagttgccattgaa 713 Query: 959 tctctgagggttgctgcggatacatggcgtatgtcattacaagaagcccttggtatatct 1018 ||||||||||||||| | || | |||| || | |||||||||||| |||||||| || Sbjct: 714 tctctgagggttgctactgagagatggtgtgtaccattacaagaagtccttggtaccgct 773 Query: 1019 gaagctagaaggacattcttaccaatcaagtttttcttaataaatgctgtaaggatttgt 1078 |||||||||||| | |||||||||||||| | |||| ||| || || || ||||||||| Sbjct: 774 gaagctagaagggctttcttaccaatcaaatatttcctaacgaacgccgttaggatttgt 833 Query: 1079 tctgtatatccatccgaagcactgactatatacaaggacataatcaggtgtgcattggtg 1138 ||| |||||||||| ||| || || | ||||||||| ||||||| |||||||| || || Sbjct: 834 tctatatatccatctgaaacaatggcaatatacaagagcataatccggtgtgcactgctg 893 Query: 1139 atatcatcctcaagcattttattcagcaaagatcccctgttgaaagcagcagatgaggca 1198 || ||| |||||| ||| | ||| ||| | |||||| ||||||||||||| ||| | Sbjct: 894 atttcacactcaagtattctgttctgcagaaatccccagttgaaagcagcaagtgaatta 953 Query: 1199 cttgttgatttattggagtctaattccttccatttactagacacacttatgaaatcatca 1258 ||| |||| ||||||||| ||| |||||| | | | |||||||||||||||| ||| || Sbjct: 954 ctttttgagttattggagcctagttcctttcttctgttagacacacttatgaagtcaaca 1013 Query: 1259 gaagtaagactagagtcgaaatgcctgcttgtgcagtattttttagaaaa 1308 |||||||| | |||||| ||||||| ||| |||||||| ||||| ||||| Sbjct: 1014 gaagtaagtccagagtctaaatgccagctcgtgcagtactttttggaaaa 1063 Score = 283 bits (143), Expect = 2e-72 Identities = 466/573 (81%), Gaps = 3/573 (0%) Strand = Plus / Plus Query: 2276 ctcatcaatctgtatagaaccgcacctgacagaagtaaaggccaccttgcccagctcatt 2335 ||||| ||||| |||||||| ||||||| || ||||| || ||||| | ||| ||| Sbjct: 2130 ctcattaatctttatagaacttcacctgatagcagtaagaacctccttgtcaagcacatc 2189 Query: 2336 agttccgtattggatattatctcaaacgtgaggcatctctgtgcattctatcagatggag 2395 |||||| |||||| |||||| | || |||||||||| ||||| ||| | || ||||| Sbjct: 2190 agttccatattggttattattacgcacatgaggcatctttgtgcgttcagtgagttggag 2249 Query: 2396 aagctaactctagagttgcacaccctgtttatgtctagttctgataaatcaaaggcagtg 2455 ||| ||||| | ||||||||||| ||||| ||||| |||| |||||| ||||| ||| Sbjct: 2250 aagttaactttggagttgcacactctgttcatgtccagttttgataattcaaatacagca 2309 Query: 2456 ctgtctcagtgcaaaccatcactagcttcatttatggcaattcttggtcacttgaactcc 2515 | |||||||||||||||||| | ||||||||||||||||||||||||||||||||| | Sbjct: 2310 atctctcagtgcaaaccatcaatggcttcatttatggcaattcttggtcacttgaacact 2369 Query: 2516 agtgaagatgattctaaatcactttgttctgcaatggcggatttataccatctcttggtg 2575 | |||||| ||| | || ||||||||||||||||| |||| | | |||| ||||| || Sbjct: 2370 actgaagacgatgcaaacccactttgttctgcaatgtgggatctgttccatttcttgctg 2429 Query: 2576 agggaaaggcactttgcactcattcacctatcaatgggctcctttggctactttgccgcc 2635 ||||| |||| | |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 2430 agggagcggcattgggcactcattcaccttgcaatgggttcctttgggtactttgccgct 2489 Query: 2636 cgcacatcttttacgcagctctggagattcgttcctggagatgccgccctttcatatagt 2695 ||||| |||||| | |||||||||| ||| ||||||| |||||| |||||||| || Sbjct: 2490 cgcacttcttttgcacagctctggaaatttgttcctgtagatgctgccctttccta---c 2546 Query: 2696 acaaagacaggggtggacattgacgagaacggattcatgttggaactgagagcttttctt 2755 ||| |||||||||||||| || ||| | || || |||| ||| ||| ||| || ||| Sbjct: 2547 acatgcacaggggtggacatagatgaggatgggtttatgtcagaattgaaagccttcctt 2606 Query: 2756 cagaaagaggttgccttacgcgccgacaaatggtctgaagagcaggtctgttttctagtt 2815 ||||||||||| ||||| || | |||||||||||||||||||| | |||| |||||| Sbjct: 2607 cagaaagaggtagccttgcgagatgacaaatggtctgaagagcaaatatgttcactagtt 2666 Query: 2816 tcagaggggagagcgctgaagaaactggttgaa 2848 |||||||||||| ||||||||||||||||||| Sbjct: 2667 tcagaggggagaatgctgaagaaactggttgaa 2699 Score = 167 bits (84), Expect = 3e-37 Identities = 180/212 (84%) Strand = Plus / Plus Query: 1371 cattgggctgcattttctctctggatcctgatgttgataacagaaacagagcacttttac 1430 ||||||| |||||||| ||| ||||| ||||||||||||| | |||||| |||||||||| Sbjct: 1123 cattgggttgcattttttctgtggattctgatgttgataatataaacagggcacttttac 1182 Query: 1431 ctgctaaacttattgtgtttttgcacttcctcaatatttccccaaacttgggcgaggaag 1490 ||||| || ||| |||||| ||||||||||||||| ||||||| ||| | || || | Sbjct: 1183 ctgctgaatttactgtgttcttgcacttcctcaatgcttccccatggttgagggaagagg 1242 Query: 1491 tggtcatcgaattatctaaaaagctacattctcttcttaatatcttaacattggaagatg 1550 ||||||| ||||||| ||| ||||||||| |||||||||| ||||| |||||||||| Sbjct: 1243 tggtcattgaattatgtaagaagctacatctgtttcttaatattttaacgttggaagatg 1302 Query: 1551 tctactcatttgtccttggctgcgaaattcct 1582 ||||||||| ||| ||||||||| |||||||| Sbjct: 1303 tctactcatatgtacttggctgccaaattcct 1334 Score = 56.0 bits (28), Expect = 9e-04 Identities = 145/184 (78%) Strand = Plus / Plus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagggatggcactgctacagaacggt 2974 ||||||||||||||||| |||||| |||| ||||||| ||| || ||||||||||| Sbjct: 2838 acaaagaagaggaagatgccagatagaatttgtgaaggaatgatgcttgtacagaacggt 2897 Query: 2975 ctaaaggtgatgcgaagcgctctcgatgcaacaggttcagcagagctcaaggacaagctt 3034 || ||| | ||||| || |||||| || ||||| | || ||||| ||||||| | || Sbjct: 2898 ctcaagatcatgcggagtgctctcagtgaaacagacttggcggagctgaaggacaggttt 2957 Query: 3035 gcgagacacttgtcatgcctccagagcgcagtttctcaaattgcaagtttctctgacaaa 3094 || ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| Sbjct: 2958 gctgtacacttgtcgcgccttgaggacgcagtttctcatcttgctagtttctctgataaa 3017 Query: 3095 atct 3098 |||| Sbjct: 3018 atct 3021 Score = 44.1 bits (22), Expect = 3.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 446 gagataatttcactggccttaaatatctct 475 ||||||||| ||||| |||||||||||||| Sbjct: 204 gagataattgcactgaccttaaatatctct 233 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Plus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagg 2952 |||||||| |||||||| ||||||||||| ||||||| Sbjct: 2763 acaaagaaaaggaagatgccagatggaatttgtgaagg 2800
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 404 bits (204), Expect = e-109 Identities = 497/593 (83%), Gaps = 15/593 (2%) Strand = Plus / Minus Query: 1613 gttgtctggcagcctgtgtatacttttctcatacaaaccctgaagacatatatgattgct 1672 ||||||||||| ||||| ||||||| ||| |||||| || ||||||| | |||||||||| Sbjct: 2434053 gttgtctggcaacctgtatatacttctcttatacaagccttgaagacttttatgattgct 2433994 Query: 1673 gctgctgcttcaagtgttgcttggaatgagttggaagccttcctacttgagagtattttc 1732 ||| || ||||||||| |||||||| |||||| |||| |||| ||||||||| ||||| Sbjct: 2433993 gcttcttcttcaagtgctgcttggagtgagtttgaagtcttcttacttgagaaccttttc 2433934 Query: 1733 catccccatttcctttgcttggaaattttaacagaactatggtgtttcttcacgcgccat 1792 ||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || Sbjct: 2433933 catccccatttcctttgcttggaaattctaacagagctatggtgtttcttcatgcattat 2433874 Query: 1793 gctgaaaatgaaacttcgacttatttaatcaatcaactattccttctgttaaagactgta 1852 |||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||| || Sbjct: 2433873 gctgaagctgaaacttcaacctatttaatcaatcagctatttcttctgttaaagactcta 2433814 Query: 1853 gcgtcatcagagaaagttcttgcacctctcagtgctttccggaaggttgcacgtgcattc 1912 |||||| ||||| ||||||||||||||||||||||| | ||||| |||| ||||||| Sbjct: 2433813 gcgtcaccagaggaagttcttgcacctctcagtgctctgaggaagcttgctcgtgcatca 2433754 Query: 1913 tgtatcatcttgagtgacgcatcatgtgcaactgttgatcaaatttatacctgtgtgctg 1972 |||| ||||||||| | ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 2433753 tgtaacatcttgagctatgcatcgtctgcaacaattgatcaaatttatacc---atgctg 2433697 Query: 1973 aatgatcacaactcttccaagtcatcagtcctgcacttagcgttgttgatggaaggattt 2032 |||||| | ||||||||||||||| || || ||||||| ||||||||||||||||| Sbjct: 2433696 aatgat---agctcttccaagtcatcgatcttgtacttagcactgttgatggaaggattt 2433640 Query: 2033 cctttcgattcattatcagatggtataaaggtgcatgctgtaaaccaactgttcacttct 2092 ||||| ||||||||||| |||| |||||| |||||||| || ||||||||||||| Sbjct: 2433639 ccttttgattcattatctcgtggtgtaaaggaacatgctgtgaagacactgttcacttct 2433580 Query: 2093 tttgtcgggtatcta------cagagctgcttgaagaatcatggtgcaattgatttgcca 2146 |||| ||||||||| |||| || ||| ||||||||||| | ||| | |||||| Sbjct: 2433579 tttgctgggtatctacagaatcagaactacttcaagaatcatggagaaatcaacttgcca 2433520 Query: 2147 a---cttctagttcgggggtaataggtcttcctgtacatgctctagcctctgc 2196 | ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 2433519 acttcttctagttcgggcataatagggtttcctgtacatgctctagcctctgc 2433467 Score = 383 bits (193), Expect = e-102 Identities = 583/713 (81%) Strand = Plus / Minus Query: 596 ggaactgcagcacatgttgccaaggttgcacctgtttttctggatgaaaccatcaaactg 655 |||||| ||| ||||||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct: 2435067 ggaactacaggacatgttgctaaggctgcacctgtttttctagatgaaaccatcaaactg 2435008 Query: 656 tgcagagcatattgtgaggctgcaaagtcagatatcggcagaactagcatgcctacagaa 715 ||||||| || | ||||||||||| ||||| ||| || |||||||||| |||| Sbjct: 2435007 tgcagagtgtactccgaggctgcaaaatcagaccagtgcataatgagcatgcctaaagaa 2434948 Query: 716 gagacaactgtgaaacatgaagtaccagatcttacaagcaacacggtcaggattacagca 775 |||||||||| | |||| ||| |||||||||| ||||||| | | |||||||||| Sbjct: 2434947 gagacaactgaggaacacaaagagacagatcttactagcaacattgcccagattacagca 2434888 Query: 776 tgcactattcagaccttgtgtaaaataggaacatacgcagcatcgaatggtggaagccag 835 |||||||||||| ||||||||||||||||||| | |||||||| | ||||||||||||| Sbjct: 2434887 tgcactattcagtccttgtgtaaaataggaacccatgcagcatccagtggtggaagccag 2434828 Query: 836 gtggctttactgaatgtatcatggaagggtgtagtttccttactgcaacttggcaaaggg 895 ||| |||||||||| ||||||||||||| || ||||||||||||| ||||| |||||| Sbjct: 2434827 gtgattttactgaatatatcatggaagggcataatttccttactgcagcttggtaaaggg 2434768 Query: 896 ctgatagaagtaaaagtaagtatcagtgatatcatttcaactcttatctcccttgtcatt 955 || |||||| ||| || | | | || || || |||| || || |||||| ||| |||| Sbjct: 2434767 atggtagaagaaaaggtgaatgtaagagagattattttaattcctatctcagttgccatt 2434708 Query: 956 gaatctctgagggttgctgcggatacatggcgtatgtcattacaagaagcccttggtata 1015 |||||||||||||||||| | || | |||| || | |||||||||||| |||||||| Sbjct: 2434707 gaatctctgagggttgctactgagagatggtgtgtaccattacaagaagtccttggtacc 2434648 Query: 1016 tctgaagctagaaggacattcttaccaatcaagtttttcttaataaatgctgtaaggatt 1075 |||||||||||||| | |||||||||||||| | |||| ||| || || || |||||| Sbjct: 2434647 gctgaagctagaagggctttcttaccaatcaaatatttcctaacgaacgccgttaggatt 2434588 Query: 1076 tgttctgtatatccatccgaagcactgactatatacaaggacataatcaggtgtgcattg 1135 |||||| |||||||||| ||| || || | ||||||||| ||||||| |||||||| || Sbjct: 2434587 tgttctatatatccatctgaaacaatggcaatatacaagagcataatccggtgtgcactg 2434528 Query: 1136 gtgatatcatcctcaagcattttattcagcaaagatcccctgttgaaagcagcagatgag 1195 |||| ||| |||||| ||| | ||| ||| | |||||| ||||||||||||| ||| Sbjct: 2434527 ctgatttcacactcaagtattctgttctgcagaaatccccagttgaaagcagcaagtgaa 2434468 Query: 1196 gcacttgttgatttattggagtctaattccttccatttactagacacacttatgaaatca 1255 |||| |||| ||||||||| ||| |||||| | | | |||||||||||||||| ||| Sbjct: 2434467 ttactttttgagttattggagcctagttcctttcttctgttagacacacttatgaagtca 2434408 Query: 1256 tcagaagtaagactagagtcgaaatgcctgcttgtgcagtattttttagaaaa 1308 |||||||||| | |||||| ||||||| ||| |||||||| ||||| ||||| Sbjct: 2434407 acagaagtaagtccagagtctaaatgccagctcgtgcagtactttttggaaaa 2434355 Score = 283 bits (143), Expect = 2e-72 Identities = 466/573 (81%), Gaps = 3/573 (0%) Strand = Plus / Minus Query: 2276 ctcatcaatctgtatagaaccgcacctgacagaagtaaaggccaccttgcccagctcatt 2335 ||||| ||||| |||||||| ||||||| || ||||| || ||||| | ||| ||| Sbjct: 2433288 ctcattaatctttatagaacttcacctgatagcagtaagaacctccttgtcaagcacatc 2433229 Query: 2336 agttccgtattggatattatctcaaacgtgaggcatctctgtgcattctatcagatggag 2395 |||||| |||||| |||||| | || |||||||||| ||||| ||| | || ||||| Sbjct: 2433228 agttccatattggttattattacgcacatgaggcatctttgtgcgttcagtgagttggag 2433169 Query: 2396 aagctaactctagagttgcacaccctgtttatgtctagttctgataaatcaaaggcagtg 2455 ||| ||||| | ||||||||||| ||||| ||||| |||| |||||| ||||| ||| Sbjct: 2433168 aagttaactttggagttgcacactctgttcatgtccagttttgataattcaaatacagca 2433109 Query: 2456 ctgtctcagtgcaaaccatcactagcttcatttatggcaattcttggtcacttgaactcc 2515 | |||||||||||||||||| | ||||||||||||||||||||||||||||||||| | Sbjct: 2433108 atctctcagtgcaaaccatcaatggcttcatttatggcaattcttggtcacttgaacact 2433049 Query: 2516 agtgaagatgattctaaatcactttgttctgcaatggcggatttataccatctcttggtg 2575 | |||||| ||| | || ||||||||||||||||| |||| | | |||| ||||| || Sbjct: 2433048 actgaagacgatgcaaacccactttgttctgcaatgtgggatctgttccatttcttgctg 2432989 Query: 2576 agggaaaggcactttgcactcattcacctatcaatgggctcctttggctactttgccgcc 2635 ||||| |||| | |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 2432988 agggagcggcattgggcactcattcaccttgcaatgggttcctttgggtactttgccgct 2432929 Query: 2636 cgcacatcttttacgcagctctggagattcgttcctggagatgccgccctttcatatagt 2695 ||||| |||||| | |||||||||| ||| ||||||| |||||| |||||||| || Sbjct: 2432928 cgcacttcttttgcacagctctggaaatttgttcctgtagatgctgccctttccta---c 2432872 Query: 2696 acaaagacaggggtggacattgacgagaacggattcatgttggaactgagagcttttctt 2755 ||| |||||||||||||| || ||| | || || |||| ||| ||| ||| || ||| Sbjct: 2432871 acatgcacaggggtggacatagatgaggatgggtttatgtcagaattgaaagccttcctt 2432812 Query: 2756 cagaaagaggttgccttacgcgccgacaaatggtctgaagagcaggtctgttttctagtt 2815 ||||||||||| ||||| || | |||||||||||||||||||| | |||| |||||| Sbjct: 2432811 cagaaagaggtagccttgcgagatgacaaatggtctgaagagcaaatatgttcactagtt 2432752 Query: 2816 tcagaggggagagcgctgaagaaactggttgaa 2848 |||||||||||| ||||||||||||||||||| Sbjct: 2432751 tcagaggggagaatgctgaagaaactggttgaa 2432719 Score = 167 bits (84), Expect = 3e-37 Identities = 180/212 (84%) Strand = Plus / Minus Query: 1371 cattgggctgcattttctctctggatcctgatgttgataacagaaacagagcacttttac 1430 ||||||| |||||||| ||| ||||| ||||||||||||| | |||||| |||||||||| Sbjct: 2434295 cattgggttgcattttttctgtggattctgatgttgataatataaacagggcacttttac 2434236 Query: 1431 ctgctaaacttattgtgtttttgcacttcctcaatatttccccaaacttgggcgaggaag 1490 ||||| || ||| |||||| ||||||||||||||| ||||||| ||| | || || | Sbjct: 2434235 ctgctgaatttactgtgttcttgcacttcctcaatgcttccccatggttgagggaagagg 2434176 Query: 1491 tggtcatcgaattatctaaaaagctacattctcttcttaatatcttaacattggaagatg 1550 ||||||| ||||||| ||| ||||||||| |||||||||| ||||| |||||||||| Sbjct: 2434175 tggtcattgaattatgtaagaagctacatctgtttcttaatattttaacgttggaagatg 2434116 Query: 1551 tctactcatttgtccttggctgcgaaattcct 1582 ||||||||| ||| ||||||||| |||||||| Sbjct: 2434115 tctactcatatgtacttggctgccaaattcct 2434084 Score = 91.7 bits (46), Expect = 2e-14 Identities = 67/74 (90%) Strand = Plus / Minus Query: 221 tgggatgattacagatgttcaggtgtatcacactgcctgctacacaagtcagttttgcag 280 |||||||||| || |||||| ||||||||||||||| |||||||||||||| || ||||| Sbjct: 2436406 tgggatgattccacatgttccggtgtatcacactgcatgctacacaagtcaattctgcag 2436347 Query: 281 gttgctctgaaatg 294 |||||||| ||||| Sbjct: 2436346 gttgctcttaaatg 2436333 Score = 73.8 bits (37), Expect = 4e-09 Identities = 67/77 (87%) Strand = Plus / Minus Query: 120 aggttttggagagcagaacttcccttatcaaccaactcgagggttcctcccagttttctg 179 |||||||||||| ||||| ||||||||||||||||||||||| | | | ||||| | || Sbjct: 2436665 aggttttggagaacagaatttcccttatcaaccaactcgaggatccttttcagttgtgtg 2436606 Query: 180 cagaggatctgggccta 196 |||| |||||||||||| Sbjct: 2436605 cagatgatctgggccta 2436589 Score = 56.0 bits (28), Expect = 9e-04 Identities = 145/184 (78%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagggatggcactgctacagaacggt 2974 ||||||||||||||||| |||||| |||| ||||||| ||| || ||||||||||| Sbjct: 2432580 acaaagaagaggaagatgccagatagaatttgtgaaggaatgatgcttgtacagaacggt 2432521 Query: 2975 ctaaaggtgatgcgaagcgctctcgatgcaacaggttcagcagagctcaaggacaagctt 3034 || ||| | ||||| || |||||| || ||||| | || ||||| ||||||| | || Sbjct: 2432520 ctcaagatcatgcggagtgctctcagtgaaacagacttggcggagctgaaggacaggttt 2432461 Query: 3035 gcgagacacttgtcatgcctccagagcgcagtttctcaaattgcaagtttctctgacaaa 3094 || ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| Sbjct: 2432460 gctgtacacttgtcgcgccttgaggacgcagtttctcatcttgctagtttctctgataaa 2432401 Query: 3095 atct 3098 |||| Sbjct: 2432400 atct 2432397 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagg 2952 |||||||| |||||||| ||||||||||| ||||||| Sbjct: 2432655 acaaagaaaaggaagatgccagatggaatttgtgaagg 2432618
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 404 bits (204), Expect = e-109 Identities = 497/593 (83%), Gaps = 15/593 (2%) Strand = Plus / Minus Query: 1613 gttgtctggcagcctgtgtatacttttctcatacaaaccctgaagacatatatgattgct 1672 ||||||||||| ||||| ||||||| ||| |||||| || ||||||| | |||||||||| Sbjct: 6439 gttgtctggcaacctgtatatacttctcttatacaagccttgaagacttttatgattgct 6380 Query: 1673 gctgctgcttcaagtgttgcttggaatgagttggaagccttcctacttgagagtattttc 1732 ||| || ||||||||| |||||||| |||||| |||| |||| ||||||||| ||||| Sbjct: 6379 gcttcttcttcaagtgctgcttggagtgagtttgaagtcttcttacttgagaaccttttc 6320 Query: 1733 catccccatttcctttgcttggaaattttaacagaactatggtgtttcttcacgcgccat 1792 ||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || Sbjct: 6319 catccccatttcctttgcttggaaattctaacagagctatggtgtttcttcatgcattat 6260 Query: 1793 gctgaaaatgaaacttcgacttatttaatcaatcaactattccttctgttaaagactgta 1852 |||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||| || Sbjct: 6259 gctgaagctgaaacttcaacctatttaatcaatcagctatttcttctgttaaagactcta 6200 Query: 1853 gcgtcatcagagaaagttcttgcacctctcagtgctttccggaaggttgcacgtgcattc 1912 |||||| ||||| ||||||||||||||||||||||| | ||||| |||| ||||||| Sbjct: 6199 gcgtcaccagaggaagttcttgcacctctcagtgctctgaggaagcttgctcgtgcatca 6140 Query: 1913 tgtatcatcttgagtgacgcatcatgtgcaactgttgatcaaatttatacctgtgtgctg 1972 |||| ||||||||| | ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 6139 tgtaacatcttgagctatgcatcgtctgcaacaattgatcaaatttatacc---atgctg 6083 Query: 1973 aatgatcacaactcttccaagtcatcagtcctgcacttagcgttgttgatggaaggattt 2032 |||||| | ||||||||||||||| || || ||||||| ||||||||||||||||| Sbjct: 6082 aatgat---agctcttccaagtcatcgatcttgtacttagcactgttgatggaaggattt 6026 Query: 2033 cctttcgattcattatcagatggtataaaggtgcatgctgtaaaccaactgttcacttct 2092 ||||| ||||||||||| |||| |||||| |||||||| || ||||||||||||| Sbjct: 6025 ccttttgattcattatctcgtggtgtaaaggaacatgctgtgaagacactgttcacttct 5966 Query: 2093 tttgtcgggtatcta------cagagctgcttgaagaatcatggtgcaattgatttgcca 2146 |||| ||||||||| |||| || ||| ||||||||||| | ||| | |||||| Sbjct: 5965 tttgctgggtatctacagaatcagaactacttcaagaatcatggagaaatcaacttgcca 5906 Query: 2147 a---cttctagttcgggggtaataggtcttcctgtacatgctctagcctctgc 2196 | ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 5905 acttcttctagttcgggcataatagggtttcctgtacatgctctagcctctgc 5853 Score = 383 bits (193), Expect = e-102 Identities = 583/713 (81%) Strand = Plus / Minus Query: 596 ggaactgcagcacatgttgccaaggttgcacctgtttttctggatgaaaccatcaaactg 655 |||||| ||| ||||||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct: 7453 ggaactacaggacatgttgctaaggctgcacctgtttttctagatgaaaccatcaaactg 7394 Query: 656 tgcagagcatattgtgaggctgcaaagtcagatatcggcagaactagcatgcctacagaa 715 ||||||| || | ||||||||||| ||||| ||| || |||||||||| |||| Sbjct: 7393 tgcagagtgtactccgaggctgcaaaatcagaccagtgcataatgagcatgcctaaagaa 7334 Query: 716 gagacaactgtgaaacatgaagtaccagatcttacaagcaacacggtcaggattacagca 775 |||||||||| | |||| ||| |||||||||| ||||||| | | |||||||||| Sbjct: 7333 gagacaactgaggaacacaaagagacagatcttactagcaacattgcccagattacagca 7274 Query: 776 tgcactattcagaccttgtgtaaaataggaacatacgcagcatcgaatggtggaagccag 835 |||||||||||| ||||||||||||||||||| | |||||||| | ||||||||||||| Sbjct: 7273 tgcactattcagtccttgtgtaaaataggaacccatgcagcatccagtggtggaagccag 7214 Query: 836 gtggctttactgaatgtatcatggaagggtgtagtttccttactgcaacttggcaaaggg 895 ||| |||||||||| ||||||||||||| || ||||||||||||| ||||| |||||| Sbjct: 7213 gtgattttactgaatatatcatggaagggcataatttccttactgcagcttggtaaaggg 7154 Query: 896 ctgatagaagtaaaagtaagtatcagtgatatcatttcaactcttatctcccttgtcatt 955 || |||||| ||| || | | | || || || |||| || || |||||| ||| |||| Sbjct: 7153 atggtagaagaaaaggtgaatgtaagagagattattttaattcctatctcagttgccatt 7094 Query: 956 gaatctctgagggttgctgcggatacatggcgtatgtcattacaagaagcccttggtata 1015 |||||||||||||||||| | || | |||| || | |||||||||||| |||||||| Sbjct: 7093 gaatctctgagggttgctactgagagatggtgtgtaccattacaagaagtccttggtacc 7034 Query: 1016 tctgaagctagaaggacattcttaccaatcaagtttttcttaataaatgctgtaaggatt 1075 |||||||||||||| | |||||||||||||| | |||| ||| || || || |||||| Sbjct: 7033 gctgaagctagaagggctttcttaccaatcaaatatttcctaacgaacgccgttaggatt 6974 Query: 1076 tgttctgtatatccatccgaagcactgactatatacaaggacataatcaggtgtgcattg 1135 |||||| |||||||||| ||| || || | ||||||||| ||||||| |||||||| || Sbjct: 6973 tgttctatatatccatctgaaacaatggcaatatacaagagcataatccggtgtgcactg 6914 Query: 1136 gtgatatcatcctcaagcattttattcagcaaagatcccctgttgaaagcagcagatgag 1195 |||| ||| |||||| ||| | ||| ||| | |||||| ||||||||||||| ||| Sbjct: 6913 ctgatttcacactcaagtattctgttctgcagaaatccccagttgaaagcagcaagtgaa 6854 Query: 1196 gcacttgttgatttattggagtctaattccttccatttactagacacacttatgaaatca 1255 |||| |||| ||||||||| ||| |||||| | | | |||||||||||||||| ||| Sbjct: 6853 ttactttttgagttattggagcctagttcctttcttctgttagacacacttatgaagtca 6794 Query: 1256 tcagaagtaagactagagtcgaaatgcctgcttgtgcagtattttttagaaaa 1308 |||||||||| | |||||| ||||||| ||| |||||||| ||||| ||||| Sbjct: 6793 acagaagtaagtccagagtctaaatgccagctcgtgcagtactttttggaaaa 6741 Score = 283 bits (143), Expect = 2e-72 Identities = 466/573 (81%), Gaps = 3/573 (0%) Strand = Plus / Minus Query: 2276 ctcatcaatctgtatagaaccgcacctgacagaagtaaaggccaccttgcccagctcatt 2335 ||||| ||||| |||||||| ||||||| || ||||| || ||||| | ||| ||| Sbjct: 5674 ctcattaatctttatagaacttcacctgatagcagtaagaacctccttgtcaagcacatc 5615 Query: 2336 agttccgtattggatattatctcaaacgtgaggcatctctgtgcattctatcagatggag 2395 |||||| |||||| |||||| | || |||||||||| ||||| ||| | || ||||| Sbjct: 5614 agttccatattggttattattacgcacatgaggcatctttgtgcgttcagtgagttggag 5555 Query: 2396 aagctaactctagagttgcacaccctgtttatgtctagttctgataaatcaaaggcagtg 2455 ||| ||||| | ||||||||||| ||||| ||||| |||| |||||| ||||| ||| Sbjct: 5554 aagttaactttggagttgcacactctgttcatgtccagttttgataattcaaatacagca 5495 Query: 2456 ctgtctcagtgcaaaccatcactagcttcatttatggcaattcttggtcacttgaactcc 2515 | |||||||||||||||||| | ||||||||||||||||||||||||||||||||| | Sbjct: 5494 atctctcagtgcaaaccatcaatggcttcatttatggcaattcttggtcacttgaacact 5435 Query: 2516 agtgaagatgattctaaatcactttgttctgcaatggcggatttataccatctcttggtg 2575 | |||||| ||| | || ||||||||||||||||| |||| | | |||| ||||| || Sbjct: 5434 actgaagacgatgcaaacccactttgttctgcaatgtgggatctgttccatttcttgctg 5375 Query: 2576 agggaaaggcactttgcactcattcacctatcaatgggctcctttggctactttgccgcc 2635 ||||| |||| | |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 5374 agggagcggcattgggcactcattcaccttgcaatgggttcctttgggtactttgccgct 5315 Query: 2636 cgcacatcttttacgcagctctggagattcgttcctggagatgccgccctttcatatagt 2695 ||||| |||||| | |||||||||| ||| ||||||| |||||| |||||||| || Sbjct: 5314 cgcacttcttttgcacagctctggaaatttgttcctgtagatgctgccctttccta---c 5258 Query: 2696 acaaagacaggggtggacattgacgagaacggattcatgttggaactgagagcttttctt 2755 ||| |||||||||||||| || ||| | || || |||| ||| ||| ||| || ||| Sbjct: 5257 acatgcacaggggtggacatagatgaggatgggtttatgtcagaattgaaagccttcctt 5198 Query: 2756 cagaaagaggttgccttacgcgccgacaaatggtctgaagagcaggtctgttttctagtt 2815 ||||||||||| ||||| || | |||||||||||||||||||| | |||| |||||| Sbjct: 5197 cagaaagaggtagccttgcgagatgacaaatggtctgaagagcaaatatgttcactagtt 5138 Query: 2816 tcagaggggagagcgctgaagaaactggttgaa 2848 |||||||||||| ||||||||||||||||||| Sbjct: 5137 tcagaggggagaatgctgaagaaactggttgaa 5105 Score = 167 bits (84), Expect = 3e-37 Identities = 180/212 (84%) Strand = Plus / Minus Query: 1371 cattgggctgcattttctctctggatcctgatgttgataacagaaacagagcacttttac 1430 ||||||| |||||||| ||| ||||| ||||||||||||| | |||||| |||||||||| Sbjct: 6681 cattgggttgcattttttctgtggattctgatgttgataatataaacagggcacttttac 6622 Query: 1431 ctgctaaacttattgtgtttttgcacttcctcaatatttccccaaacttgggcgaggaag 1490 ||||| || ||| |||||| ||||||||||||||| ||||||| ||| | || || | Sbjct: 6621 ctgctgaatttactgtgttcttgcacttcctcaatgcttccccatggttgagggaagagg 6562 Query: 1491 tggtcatcgaattatctaaaaagctacattctcttcttaatatcttaacattggaagatg 1550 ||||||| ||||||| ||| ||||||||| |||||||||| ||||| |||||||||| Sbjct: 6561 tggtcattgaattatgtaagaagctacatctgtttcttaatattttaacgttggaagatg 6502 Query: 1551 tctactcatttgtccttggctgcgaaattcct 1582 ||||||||| ||| ||||||||| |||||||| Sbjct: 6501 tctactcatatgtacttggctgccaaattcct 6470 Score = 91.7 bits (46), Expect = 2e-14 Identities = 67/74 (90%) Strand = Plus / Minus Query: 221 tgggatgattacagatgttcaggtgtatcacactgcctgctacacaagtcagttttgcag 280 |||||||||| || |||||| ||||||||||||||| |||||||||||||| || ||||| Sbjct: 8792 tgggatgattccacatgttccggtgtatcacactgcatgctacacaagtcaattctgcag 8733 Query: 281 gttgctctgaaatg 294 |||||||| ||||| Sbjct: 8732 gttgctcttaaatg 8719 Score = 73.8 bits (37), Expect = 4e-09 Identities = 67/77 (87%) Strand = Plus / Minus Query: 120 aggttttggagagcagaacttcccttatcaaccaactcgagggttcctcccagttttctg 179 |||||||||||| ||||| ||||||||||||||||||||||| | | | ||||| | || Sbjct: 9051 aggttttggagaacagaatttcccttatcaaccaactcgaggatccttttcagttgtgtg 8992 Query: 180 cagaggatctgggccta 196 |||| |||||||||||| Sbjct: 8991 cagatgatctgggccta 8975 Score = 56.0 bits (28), Expect = 9e-04 Identities = 145/184 (78%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagggatggcactgctacagaacggt 2974 ||||||||||||||||| |||||| |||| ||||||| ||| || ||||||||||| Sbjct: 4966 acaaagaagaggaagatgccagatagaatttgtgaaggaatgatgcttgtacagaacggt 4907 Query: 2975 ctaaaggtgatgcgaagcgctctcgatgcaacaggttcagcagagctcaaggacaagctt 3034 || ||| | ||||| || |||||| || ||||| | || ||||| ||||||| | || Sbjct: 4906 ctcaagatcatgcggagtgctctcagtgaaacagacttggcggagctgaaggacaggttt 4847 Query: 3035 gcgagacacttgtcatgcctccagagcgcagtttctcaaattgcaagtttctctgacaaa 3094 || ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| Sbjct: 4846 gctgtacacttgtcgcgccttgaggacgcagtttctcatcttgctagtttctctgataaa 4787 Query: 3095 atct 3098 |||| Sbjct: 4786 atct 4783 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagg 2952 |||||||| |||||||| ||||||||||| ||||||| Sbjct: 5041 acaaagaaaaggaagatgccagatggaatttgtgaagg 5004
>dbj|AK065797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041K05, full insert sequence Length = 3176 Score = 404 bits (204), Expect = e-109 Identities = 497/593 (83%), Gaps = 15/593 (2%) Strand = Plus / Plus Query: 1613 gttgtctggcagcctgtgtatacttttctcatacaaaccctgaagacatatatgattgct 1672 ||||||||||| ||||| ||||||| ||| |||||| || ||||||| | |||||||||| Sbjct: 1365 gttgtctggcaacctgtatatacttctcttatacaagccttgaagacttttatgattgct 1424 Query: 1673 gctgctgcttcaagtgttgcttggaatgagttggaagccttcctacttgagagtattttc 1732 ||| || ||||||||| |||||||| |||||| |||| |||| ||||||||| ||||| Sbjct: 1425 gcttcttcttcaagtgctgcttggagtgagtttgaagtcttcttacttgagaaccttttc 1484 Query: 1733 catccccatttcctttgcttggaaattttaacagaactatggtgtttcttcacgcgccat 1792 ||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || Sbjct: 1485 catccccatttcctttgcttggaaattctaacagagctatggtgtttcttcatgcattat 1544 Query: 1793 gctgaaaatgaaacttcgacttatttaatcaatcaactattccttctgttaaagactgta 1852 |||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||| || Sbjct: 1545 gctgaagctgaaacttcaacctatttaatcaatcagctatttcttctgttaaagactcta 1604 Query: 1853 gcgtcatcagagaaagttcttgcacctctcagtgctttccggaaggttgcacgtgcattc 1912 |||||| ||||| ||||||||||||||||||||||| | ||||| |||| ||||||| Sbjct: 1605 gcgtcaccagaggaagttcttgcacctctcagtgctctgaggaagcttgctcgtgcatca 1664 Query: 1913 tgtatcatcttgagtgacgcatcatgtgcaactgttgatcaaatttatacctgtgtgctg 1972 |||| ||||||||| | ||||| | |||||| ||||||||||||||||| ||||| Sbjct: 1665 tgtaacatcttgagctatgcatcgtctgcaacaattgatcaaatttatacc---atgctg 1721 Query: 1973 aatgatcacaactcttccaagtcatcagtcctgcacttagcgttgttgatggaaggattt 2032 |||||| | ||||||||||||||| || || ||||||| ||||||||||||||||| Sbjct: 1722 aatgat---agctcttccaagtcatcgatcttgtacttagcactgttgatggaaggattt 1778 Query: 2033 cctttcgattcattatcagatggtataaaggtgcatgctgtaaaccaactgttcacttct 2092 ||||| ||||||||||| |||| |||||| |||||||| || ||||||||||||| Sbjct: 1779 ccttttgattcattatctcgtggtgtaaaggaacatgctgtgaagacactgttcacttct 1838 Query: 2093 tttgtcgggtatcta------cagagctgcttgaagaatcatggtgcaattgatttgcca 2146 |||| ||||||||| |||| || ||| ||||||||||| | ||| | |||||| Sbjct: 1839 tttgctgggtatctacagaatcagaactacttcaagaatcatggagaaatcaacttgcca 1898 Query: 2147 a---cttctagttcgggggtaataggtcttcctgtacatgctctagcctctgc 2196 | ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 1899 acttcttctagttcgggcataatagggtttcctgtacatgctctagcctctgc 1951 Score = 373 bits (188), Expect = 3e-99 Identities = 625/770 (81%), Gaps = 3/770 (0%) Strand = Plus / Plus Query: 539 tttatttcggaattgctaacactgatggaaagctcaatagttgacaagacaattaatgga 598 ||||||| ||| || ||||| |||| |||||||||||| ||||||||| | | ||| Sbjct: 297 tttattttggagttactaaccctgactgaaagctcaatacttgacaagaaactc---gga 353 Query: 599 actgcagcacatgttgccaaggttgcacctgtttttctggatgaaaccatcaaactgtgc 658 ||| ||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 354 actacaggacatgttgctaaggctgcacctgtttttctagatgaaaccatcaaactgtgc 413 Query: 659 agagcatattgtgaggctgcaaagtcagatatcggcagaactagcatgcctacagaagag 718 |||| || | ||||||||||| ||||| ||| || |||||||||| ||||||| Sbjct: 414 agagtgtactccgaggctgcaaaatcagaccagtgcataatgagcatgcctaaagaagag 473 Query: 719 acaactgtgaaacatgaagtaccagatcttacaagcaacacggtcaggattacagcatgc 778 ||||||| | |||| ||| |||||||||| ||||||| | | ||||||||||||| Sbjct: 474 acaactgaggaacacaaagagacagatcttactagcaacattgcccagattacagcatgc 533 Query: 779 actattcagaccttgtgtaaaataggaacatacgcagcatcgaatggtggaagccaggtg 838 ||||||||| ||||||||||||||||||| | |||||||| | |||||||||||||||| Sbjct: 534 actattcagtccttgtgtaaaataggaacccatgcagcatccagtggtggaagccaggtg 593 Query: 839 gctttactgaatgtatcatggaagggtgtagtttccttactgcaacttggcaaagggctg 898 |||||||||| ||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 594 attttactgaatatatcatggaagggcataatttccttactgcagcttggtaaagggatg 653 Query: 899 atagaagtaaaagtaagtatcagtgatatcatttcaactcttatctcccttgtcattgaa 958 |||||| ||| || | | | || || || |||| || || |||||| ||| ||||||| Sbjct: 654 gtagaagaaaaggtgaatgtaagagagattattttaattcctatctcagttgccattgaa 713 Query: 959 tctctgagggttgctgcggatacatggcgtatgtcattacaagaagcccttggtatatct 1018 |||||| |||||||| | || | |||| || | |||||||||||| |||||||| || Sbjct: 714 tctctgggggttgctactgagagatggtgtgtaccattacaagaagtccttggtaccgct 773 Query: 1019 gaagctagaaggacattcttaccaatcaagtttttcttaataaatgctgtaaggatttgt 1078 |||||||| ||| | |||||||||||||| | |||| ||| || || || ||||||||| Sbjct: 774 gaagctaggagggctttcttaccaatcaaatatttcctaacgaacgccgttaggatttgt 833 Query: 1079 tctgtatatccatccgaagcactgactatatacaaggacataatcaggtgtgcattggtg 1138 ||| |||||||||| ||| || || | ||||||||| ||||||| |||||||| || || Sbjct: 834 tctatatatccatctgaaacaatggcaatatacaagagcataatccggtgtgcactgctg 893 Query: 1139 atatcatcctcaagcattttattcagcaaagatcccctgttgaaagcagcagatgaggca 1198 || ||| |||||| ||| | ||| ||| | |||||| ||||||||||||| ||| | Sbjct: 894 atttcacactcaagtattctgttctgcagaaatccccagttgaaagcagcaagtgaatta 953 Query: 1199 cttgttgatttattggagtctaattccttccatttactagacacacttatgaaatcatca 1258 ||| |||| ||||||||| ||| |||||| | | | |||||||||||||||| ||| || Sbjct: 954 ctttttgagttattggagcctagttcctttcttctgttagacacacttatgaagtcaaca 1013 Query: 1259 gaagtaagactagagtcgaaatgcctgcttgtgcagtattttttagaaaa 1308 |||||||| | |||||| ||||||| ||| |||||||| ||||| ||||| Sbjct: 1014 gaagtaagtccagagtctaaatgccagctcgtgcagtactttttggaaaa 1063 Score = 276 bits (139), Expect = 5e-70 Identities = 465/573 (81%), Gaps = 3/573 (0%) Strand = Plus / Plus Query: 2276 ctcatcaatctgtatagaaccgcacctgacagaagtaaaggccaccttgcccagctcatt 2335 ||||| ||||| |||||||| ||||||| || ||||| || ||||| | ||| ||| Sbjct: 2130 ctcattaatctttatagaacttcacctgatagcagtaagaacctccttgtcaagcacatc 2189 Query: 2336 agttccgtattggatattatctcaaacgtgaggcatctctgtgcattctatcagatggag 2395 |||||| |||||| |||||| | || |||||||||| ||||| ||| | || ||||| Sbjct: 2190 agttccatattggttattattacgcacatgaggcatctttgtgcgttcagtgagttggag 2249 Query: 2396 aagctaactctagagttgcacaccctgtttatgtctagttctgataaatcaaaggcagtg 2455 ||| ||||| | ||||||||||| ||||| ||||| |||| |||||| ||||| ||| Sbjct: 2250 aagttaactttggagttgcacactctgttcatgtccagttttgataattcaaatacagca 2309 Query: 2456 ctgtctcagtgcaaaccatcactagcttcatttatggcaattcttggtcacttgaactcc 2515 | |||||||||||||||||| | |||||||||||||||||||||||||||||| || | Sbjct: 2310 atctctcagtgcaaaccatcaatggcttcatttatggcaattcttggtcacttgcacact 2369 Query: 2516 agtgaagatgattctaaatcactttgttctgcaatggcggatttataccatctcttggtg 2575 | |||||| ||| | || ||||||||||||||||| |||| | | |||| ||||| || Sbjct: 2370 actgaagacgatgcaaacccactttgttctgcaatgtgggatctgttccatttcttgctg 2429 Query: 2576 agggaaaggcactttgcactcattcacctatcaatgggctcctttggctactttgccgcc 2635 ||||| |||| | |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 2430 agggagcggcattgggcactcattcaccttgcaatgggttcctttgggtactttgccgct 2489 Query: 2636 cgcacatcttttacgcagctctggagattcgttcctggagatgccgccctttcatatagt 2695 ||||| |||||| | |||||||||| ||| ||||||| |||||| |||||||| || Sbjct: 2490 cgcacttcttttgcacagctctggaaatttgttcctgtagatgctgccctttccta---c 2546 Query: 2696 acaaagacaggggtggacattgacgagaacggattcatgttggaactgagagcttttctt 2755 ||| |||||||||||||| || ||| | || || |||| ||| ||| ||| || ||| Sbjct: 2547 acatgcacaggggtggacatagatgaggatgggtttatgtcagaattgaaagccttcctt 2606 Query: 2756 cagaaagaggttgccttacgcgccgacaaatggtctgaagagcaggtctgttttctagtt 2815 ||||||||||| ||||| || | |||||||||||||||||||| | |||| |||||| Sbjct: 2607 cagaaagaggtagccttgcgagatgacaaatggtctgaagagcaaatatgttcactagtt 2666 Query: 2816 tcagaggggagagcgctgaagaaactggttgaa 2848 |||||||||||| ||||||||||||||||||| Sbjct: 2667 tcagaggggagaatgctgaagaaactggttgaa 2699 Score = 167 bits (84), Expect = 3e-37 Identities = 180/212 (84%) Strand = Plus / Plus Query: 1371 cattgggctgcattttctctctggatcctgatgttgataacagaaacagagcacttttac 1430 ||||||| |||||||| ||| ||||| ||||||||||||| | |||||| |||||||||| Sbjct: 1123 cattgggttgcattttttctgtggattctgatgttgataatataaacagggcacttttac 1182 Query: 1431 ctgctaaacttattgtgtttttgcacttcctcaatatttccccaaacttgggcgaggaag 1490 ||||| || ||| |||||| ||||||||||||||| ||||||| ||| | || || | Sbjct: 1183 ctgctgaatttactgtgttcttgcacttcctcaatgcttccccatggttgagggaagagg 1242 Query: 1491 tggtcatcgaattatctaaaaagctacattctcttcttaatatcttaacattggaagatg 1550 ||||||| ||||||| ||| ||||||||| |||||||||| ||||| |||||||||| Sbjct: 1243 tggtcattgaattatgtaagaagctacatctgtttcttaatattttaacgttggaagatg 1302 Query: 1551 tctactcatttgtccttggctgcgaaattcct 1582 ||||||||| ||| ||||||||| |||||||| Sbjct: 1303 tctactcatatgtacttggctgccaaattcct 1334 Score = 56.0 bits (28), Expect = 9e-04 Identities = 145/184 (78%) Strand = Plus / Plus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagggatggcactgctacagaacggt 2974 ||||||||||||||||| |||||| |||| ||||||| ||| || ||||||||||| Sbjct: 2838 acaaagaagaggaagatgccagatagaatttgtgaaggaatgatgcttgtacagaacggt 2897 Query: 2975 ctaaaggtgatgcgaagcgctctcgatgcaacaggttcagcagagctcaaggacaagctt 3034 || ||| | ||||| || |||||| || ||||| | || ||||| ||||||| | || Sbjct: 2898 ctcaagatcatgcggagtgctctcagtgaaacagacttggcggagctgaaggacaggttt 2957 Query: 3035 gcgagacacttgtcatgcctccagagcgcagtttctcaaattgcaagtttctctgacaaa 3094 || ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| Sbjct: 2958 gctgtacacttgtcgcgccttgaggacgcagtttctcatcttgctagtttctctgataaa 3017 Query: 3095 atct 3098 |||| Sbjct: 3018 atct 3021 Score = 44.1 bits (22), Expect = 3.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 446 gagataatttcactggccttaaatatctct 475 ||||||||| ||||| |||||||||||||| Sbjct: 204 gagataattgcactgaccttaaatatctct 233 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Plus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagg 2952 |||||||| |||||||| ||||||||||| ||||||| Sbjct: 2763 acaaagaaaaggaagatgccagatggaatttgtgaagg 2800
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 283 bits (143), Expect = 2e-72 Identities = 466/573 (81%), Gaps = 3/573 (0%) Strand = Plus / Minus Query: 2276 ctcatcaatctgtatagaaccgcacctgacagaagtaaaggccaccttgcccagctcatt 2335 ||||| ||||| |||||||| ||||||| || ||||| || ||||| | ||| ||| Sbjct: 150020 ctcattaatctttatagaacttcacctgatagcagtaagaacctccttgtcaagcacatc 149961 Query: 2336 agttccgtattggatattatctcaaacgtgaggcatctctgtgcattctatcagatggag 2395 |||||| |||||| |||||| | || |||||||||| ||||| ||| | || ||||| Sbjct: 149960 agttccatattggttattattacgcacatgaggcatctttgtgcgttcagtgagttggag 149901 Query: 2396 aagctaactctagagttgcacaccctgtttatgtctagttctgataaatcaaaggcagtg 2455 ||| ||||| | ||||||||||| ||||| ||||| |||| |||||| ||||| ||| Sbjct: 149900 aagttaactttggagttgcacactctgttcatgtccagttttgataattcaaatacagca 149841 Query: 2456 ctgtctcagtgcaaaccatcactagcttcatttatggcaattcttggtcacttgaactcc 2515 | |||||||||||||||||| | ||||||||||||||||||||||||||||||||| | Sbjct: 149840 atctctcagtgcaaaccatcaatggcttcatttatggcaattcttggtcacttgaacact 149781 Query: 2516 agtgaagatgattctaaatcactttgttctgcaatggcggatttataccatctcttggtg 2575 | |||||| ||| | || ||||||||||||||||| |||| | | |||| ||||| || Sbjct: 149780 actgaagacgatgcaaacccactttgttctgcaatgtgggatctgttccatttcttgctg 149721 Query: 2576 agggaaaggcactttgcactcattcacctatcaatgggctcctttggctactttgccgcc 2635 ||||| |||| | |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 149720 agggagcggcattgggcactcattcaccttgcaatgggttcctttgggtactttgccgct 149661 Query: 2636 cgcacatcttttacgcagctctggagattcgttcctggagatgccgccctttcatatagt 2695 ||||| |||||| | |||||||||| ||| ||||||| |||||| |||||||| || Sbjct: 149660 cgcacttcttttgcacagctctggaaatttgttcctgtagatgctgccctttccta---c 149604 Query: 2696 acaaagacaggggtggacattgacgagaacggattcatgttggaactgagagcttttctt 2755 ||| |||||||||||||| || ||| | || || |||| ||| ||| ||| || ||| Sbjct: 149603 acatgcacaggggtggacatagatgaggatgggtttatgtcagaattgaaagccttcctt 149544 Query: 2756 cagaaagaggttgccttacgcgccgacaaatggtctgaagagcaggtctgttttctagtt 2815 ||||||||||| ||||| || | |||||||||||||||||||| | |||| |||||| Sbjct: 149543 cagaaagaggtagccttgcgagatgacaaatggtctgaagagcaaatatgttcactagtt 149484 Query: 2816 tcagaggggagagcgctgaagaaactggttgaa 2848 |||||||||||| ||||||||||||||||||| Sbjct: 149483 tcagaggggagaatgctgaagaaactggttgaa 149451 Score = 131 bits (66), Expect = 2e-26 Identities = 248/307 (80%), Gaps = 15/307 (4%) Strand = Plus / Minus Query: 1899 ttgcacgtgcattctgtatcatcttgagtgacgcatcatgtgcaactgttgatcaaattt 1958 |||| ||||||| |||| ||||||||| | ||||| | |||||| |||||||||||| Sbjct: 150499 ttgctcgtgcatcatgtaacatcttgagctatgcatcgtctgcaacaattgatcaaattt 150440 Query: 1959 atacctgtgtgctgaatgatcacaactcttccaagtcatcagtcctgcacttagcgttgt 2018 ||||| ||||||||||| | ||||||||||||||| || || ||||||| ||| Sbjct: 150439 atacca---tgctgaatgat---agctcttccaagtcatcgatcttgtacttagcactgt 150386 Query: 2019 tgatggaaggatttcctttcgattcattatcagatggtataaaggtgcatgctgtaaacc 2078 ||||||||||||||||||| ||||||||||| |||| |||||| |||||||| || Sbjct: 150385 tgatggaaggatttccttttgattcattatctcgtggtgtaaaggaacatgctgtgaaga 150326 Query: 2079 aactgttcacttcttttgtcgggtatcta------cagagctgcttgaagaatcatggtg 2132 ||||||||||||||||| ||||||||| |||| || ||| ||||||||||| | Sbjct: 150325 cactgttcacttcttttgctgggtatctacagaatcagaactacttcaagaatcatggag 150266 Query: 2133 caattgatttgccaa---cttctagttcgggggtaataggtcttcctgtacatgctctag 2189 ||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||| Sbjct: 150265 aaatcaacttgccaacttcttctagttcgggcataatagggtttcctgtacatgctctag 150206 Query: 2190 cctctgc 2196 ||||||| Sbjct: 150205 cctctgc 150199 Score = 56.0 bits (28), Expect = 9e-04 Identities = 145/184 (78%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagggatggcactgctacagaacggt 2974 ||||||||||||||||| |||||| |||| ||||||| ||| || ||||||||||| Sbjct: 149312 acaaagaagaggaagatgccagatagaatttgtgaaggaatgatgcttgtacagaacggt 149253 Query: 2975 ctaaaggtgatgcgaagcgctctcgatgcaacaggttcagcagagctcaaggacaagctt 3034 || ||| | ||||| || |||||| || ||||| | || ||||| ||||||| | || Sbjct: 149252 ctcaagatcatgcggagtgctctcagtgaaacagacttggcggagctgaaggacaggttt 149193 Query: 3035 gcgagacacttgtcatgcctccagagcgcagtttctcaaattgcaagtttctctgacaaa 3094 || ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| Sbjct: 149192 gctgtacacttgtcgcgccttgaggacgcagtttctcatcttgctagtttctctgataaa 149133 Query: 3095 atct 3098 |||| Sbjct: 149132 atct 149129 Score = 44.1 bits (22), Expect = 3.3 Identities = 34/38 (89%) Strand = Plus / Minus Query: 2915 acaaagaagaggaagataccagatggaatcagtgaagg 2952 |||||||| |||||||| ||||||||||| ||||||| Sbjct: 149387 acaaagaaaaggaagatgccagatggaatttgtgaagg 149350
>ref|XM_757298.1| Ustilago maydis 521 hypothetical protein (UM06244.1) partial mRNA Length = 942 Score = 46.1 bits (23), Expect = 0.82 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2978 aaggtgatgcgaagcgctctcga 3000 ||||||||||||||||||||||| Sbjct: 823 aaggtgatgcgaagcgctctcga 845
>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence Length = 186985 Score = 46.1 bits (23), Expect = 0.82 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2496 ttcttggtcacttgaactccagtgaag 2522 ||||||||||||| ||||||||||||| Sbjct: 120784 ttcttggtcacttcaactccagtgaag 120758
>dbj|AP006274.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-217F13, chromosome 3, complete sequence Length = 178968 Score = 46.1 bits (23), Expect = 0.82 Identities = 29/31 (93%) Strand = Plus / Minus Query: 2688 catatagtacaaagacaggggtggacattga 2718 |||||||| ||| |||||||||||||||||| Sbjct: 172627 catatagtgcaaggacaggggtggacattga 172597
>ref|XM_839766.1| Trypanosoma brucei TREU927 chromosome 5 Length = 7875 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1658 acatatatgattgctgctgctgcttc 1683 |||||||| ||||||||||||||||| Sbjct: 378 acatatatcattgctgctgctgcttc 353
>ref|NM_001043115.1| Drosophila melanogaster Shaker cognate b CG1066-RC, transcript variant C (Shab), mRNA Length = 4128 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 818 ttgctgctgctgcttcgagtgttgct 793
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 2924267 ttgctgctgctgcttcgagtgttgct 2924242
>gb|AC104617.9| Trypanosoma brucei chromosome 5 clone RPCI93-1P6, complete sequence Length = 152664 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1658 acatatatgattgctgctgctgcttc 1683 |||||||| ||||||||||||||||| Sbjct: 106974 acatatatcattgctgctgctgcttc 106999
>ref|NM_167967.1| Drosophila melanogaster Shaker cognate b CG1066-RA, transcript variant A (Shab), mRNA Length = 3590 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 818 ttgctgctgctgcttcgagtgttgct 793
>ref|NM_079170.2| Drosophila melanogaster Shaker cognate b CG1066-RB, transcript variant B (Shab), mRNA Length = 3680 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 818 ttgctgctgctgcttcgagtgttgct 793
>ref|XM_820223.1| Trypanosoma brucei TREU927 clone RPCI93-1P6 hypothetical protein (Tb927.5.1850) partial mRNA Length = 7875 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1658 acatatatgattgctgctgctgcttc 1683 |||||||| ||||||||||||||||| Sbjct: 378 acatatatcattgctgctgctgcttc 353
>dbj|AK157781.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130038C21 product:hypothetical Beta tubulin containing protein, full insert sequence Length = 2393 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1370 tcattgggctgcattttctctc 1391 |||||||||||||||||||||| Sbjct: 2202 tcattgggctgcattttctctc 2181
>gb|AC010561.7| Drosophila melanogaster 3L BAC RP98-21A2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171451 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 13148 ttgctgctgctgcttcgagtgttgct 13123
>gb|AC107487.1| Drosophila melanogaster 3L BAC RP98-10D20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170900 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 109128 ttgctgctgctgcttcgagtgttgct 109103
>emb|AL592063.10| Human DNA sequence from clone RP11-575F9 on chromosome 1, complete sequence Length = 160396 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2909 gtcaacacaaagaagaggaaga 2930 |||||||||||||||||||||| Sbjct: 29652 gtcaacacaaagaagaggaaga 29631
>gb|AC013409.8| Homo sapiens BAC clone RP11-471D6 from 2, complete sequence Length = 195478 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1735 tccccatttcctttgcttggaa 1756 |||||||||||||||||||||| Sbjct: 182330 tccccatttcctttgcttggaa 182351
>gb|AF084525.1|AF084525 Drosophila melanogaster delayed rectifier potassium channel (Shab) mRNA, complete cds Length = 2868 Score = 44.1 bits (22), Expect = 3.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1668 ttgctgctgctgcttcaagtgttgct 1693 |||||||||||||||| ||||||||| Sbjct: 96 ttgctgctgctgcttcgagtgttgct 71
>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete sequence Length = 198761 Score = 44.1 bits (22), Expect = 3.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 tttcttgctcttggtgcaaagg 350 |||||||||||||||||||||| Sbjct: 100114 tttcttgctcttggtgcaaagg 100093 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 656,133,496 Number of extensions: 34881396 Number of successful extensions: 200236 Number of sequences better than 10.0: 22 Number of HSP's gapped: 200204 Number of HSP's successfully gapped: 74 Length of query: 3348 Length of database: 18,610,659,111 Length adjustment: 24 Effective length of query: 3324 Effective length of database: 18,499,340,271 Effective search space: 61491807060804 Effective search space used: 61491807060804 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
