ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf53p11 |
|---|---|
| Clone Library Name | barley_pub |
>P92964:RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 - Arabidopsis thaliana| (Mouse-ear cress) Length = 264 Score = 258 bits (659), Expect = 4e-68 Identities = 146/288 (50%), Positives = 182/288 (63%), Gaps = 2/288 (0%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 MRPVF GNF+YETRQSDLERLF KYG + R+D+KSGYAFVYF+DERDAEDAIR+L N F Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 G+ +RRLSVEW++ E P+ D ++ KPT+TLFVINFDP+RTK DIE+HF+PYGK Sbjct: 61 GYEKRRLSVEWAKGERGRPRG-DAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGK 119 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHG--SP 770 + N+RIR+NF+FVQ+E QEDA+ A+ T +S ILDRVV+VEYA +DDD ERDDR+G SP Sbjct: 120 VTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDD-ERDDRNGGRSP 178 Query: 771 RQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQGXXXXXXXXXXXXXXXXXXXXXXXX 950 R+ R D P G R SP Sbjct: 179 RRSLSPVYRRRPSPDYGRRPSPGQGRRPSP------------------------------ 208 Query: 951 XXXXQYGAPYGRSRSPVYDRYERGWMDFEGSQRKEFQGG*RRSTFYGR 1094 YGR+RSP YDRY +G +E + ++ RRS+ YGR Sbjct: 209 --------DYGRARSPEYDRY-KGPAAYERRRSPDYG---RRSSDYGR 244
>P92965:RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 - Arabidopsis thaliana| (Mouse-ear cress) Length = 350 Score = 219 bits (557), Expect = 3e-56 Identities = 108/209 (51%), Positives = 145/209 (69%), Gaps = 3/209 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M+PVFCGNF+Y+ R+ DLERLF KYG + R+D+K+G+AFVY +DERDAEDAIR L EF Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNR---DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 G RRL VEW++ E K R + + +P++TLFVINFD T+ D+E+HF+P Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120 Query: 588 YGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGS 767 YGKI N+RIR+NFAF+QYE QEDA+ A++ ++ S ++D+V++VEYA +DDD R + H S Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDD-ARGNGH-S 178 Query: 768 PRQGRDRYGSPRRGGDRYGSPRRGGDRYG 854 P + RDR RR RG YG Sbjct: 179 PERRRDRSPERRRRSPSPYKRERGSPDYG 207
>P92966:RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 - Arabidopsis thaliana| (Mouse-ear cress) Length = 356 Score = 218 bits (555), Expect = 5e-56 Identities = 106/208 (50%), Positives = 145/208 (69%), Gaps = 2/208 (0%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M+PVFCGNF+Y+ R+SDLERLF KYG + R+D+K+G+AFVY +DERDAEDAIR L E+ Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60 Query: 417 GHSRRRLSVEWSRQEEPVP--KNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPY 590 G + RRL VEW++ + R + + +P++TLFVINFD T+ D+ERHF+PY Sbjct: 61 GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120 Query: 591 GKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSP 770 GKI N+RIR+NFAF+QYE QEDA+ A++ T+ S ++D+V++VEYA +DDD+ + SP Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY--SP 178 Query: 771 RQGRDRYGSPRRGGDRYGSPRRGGDRYG 854 + RDR RR RG YG Sbjct: 179 ERRRDRSPDRRRRSPSPYRRERGSPDYG 206
>Q9NEW6:RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 - Caenorhabditis| elegans Length = 258 Score = 80.9 bits (198), Expect = 1e-14 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 27/235 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSG----YAFVYFQDERDAEDAIRRLSNAE 413 V+ GN + R+ ++E +F KYG I+ +DIKSG +AFV F+D RDAEDA+R E Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70 Query: 414 FGHSRRRLSVEWSRQEEP-VPKNRDRPTGAD------------------AKPTRTLFVIN 536 F RR+ VE++R P P R G D + T ++ Sbjct: 71 F--DGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 128 Query: 537 FDPVRTKVVDIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVT 713 P D++ H + G + + R V++ ED AV K D + Sbjct: 129 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 188 Query: 714 VEYAFRDDDNERDDRHGSPRQGRDRYGSP---RRGGDRYGSPRRGGDRYGSPKRA 869 Y +DN G + R R SP RR +Y SPRR R S R+ Sbjct: 189 TAYIRVREDNSSGGGSGGGGRDRSRSRSPRAERRASPKY-SPRRSRSRSRSRSRS 242
>O22315:SFRS1_ARATH Pre-mRNA-splicing factor SF2 - Arabidopsis thaliana (Mouse-ear| cress) Length = 303 Score = 75.1 bits (183), Expect = 7e-13 Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK-----SGYAFVYFQDERDAEDAIRRLS 404 R V+ GN + R+ ++E LFSKYGP+ +ID+K GYAFV F D RDAEDAI Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66 Query: 405 NAEF-GHSRRRLSVEWSRQEEPVPK----------NRDRPTGADAKPTRT---LFVINFD 542 +F GH R R+ + R R G P+R ++ Sbjct: 67 GYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGL 126 Query: 543 PVRTKVVDIERHFQPYGKIANIRI----RKNFAFVQYEMQEDASVAVNKTDKSTILDRVV 710 P D++ H + G + ++ R V Y ED A+ K D + + Sbjct: 127 PSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFS 186 Query: 711 TVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPK 863 R+ D+ +D R S + + S RG S R R SPK Sbjct: 187 NGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPK 237
>Q9D0B0:SFRS9_MOUSE Splicing factor, arginine/serine-rich 9 - Mus musculus (Mouse)| Length = 222 Score = 73.9 bits (180), Expect = 1e-12 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 12/222 (5%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDE 371 GW E G ++ GN + R+ DLE LF KYG IR I++K+ +AFV F+D Sbjct: 4 GWADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDP 63 Query: 372 RDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA-DAKPTRT---LFVINF 539 RDAEDAI + ++G RL VE+ R P GA + PTR +++ Sbjct: 64 RDAEDAIYGRNGYDYGQC--RLRVEFPR---TYGGRGGWPRGARNGPPTRRSDFRVLVSG 118 Query: 540 DPVRTKVVDIERHFQPYGKIANIRIRKN-FAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 P D++ H + G + ++K+ V+Y +ED A+ K D + Sbjct: 119 LPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGET 178 Query: 717 EYAFRDDDNERDDRHGSPRQGRDRYGSP--RRGGDRYGSPRR 836 Y + + R G SP RG Y SP R Sbjct: 179 SYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFR 220
>Q5PPI1:SFRS9_RAT Splicing factor, arginine/serine-rich 9 - Rattus norvegicus (Rat)| Length = 221 Score = 73.2 bits (178), Expect = 3e-12 Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 17/237 (7%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDE 371 GW E G ++ GN + R+ DLE LF KYG IR I++K+ +AFV F+D Sbjct: 3 GWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDP 62 Query: 372 RDAEDAIRRLSNAEFGHSRRRLSVE--------WSRQEEPVPKNRDRPTGADAKPTRTLF 527 RDAEDAI + ++G R R+ W R P R +D + Sbjct: 63 RDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPPTR----RSDFR-----V 113 Query: 528 VINFDPVRTKVVDIERHFQPYGKIANIRIRKN-FAFVQYEMQEDASVAVNKTDKSTILDR 704 +++ P D++ H + G + ++K+ V+Y +ED A+ K D Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLD------- 166 Query: 705 VVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDR-YGSP--RRGGDRYGSPKR 866 + FR + E P +G S R G R SP RG Y SP R Sbjct: 167 ----DTKFRSHEGETSYIRVYPERGTSYGCSRSRSGSRGRDSPYQSRGSPHYFSPFR 219
>Q13242:SFRS9_HUMAN Splicing factor, arginine/serine-rich 9 - Homo sapiens (Human)| Length = 221 Score = 72.8 bits (177), Expect = 3e-12 Identities = 65/224 (29%), Positives = 96/224 (42%), Gaps = 14/224 (6%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDE 371 GW E G ++ GN + R+ DLE LF KYG IR I++K+ +AFV F+D Sbjct: 3 GWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDP 62 Query: 372 RDAEDAIRRLSNAEFGHSRRRLSVEWSRQ---EEPVPKNRDRPTGADAKPTRT---LFVI 533 RDAEDAI + ++G RL VE+ R P+ G + PTR ++ Sbjct: 63 RDAEDAIYGRNGYDYGQC--RLRVEFPRTYGGRGGWPRG-----GRNGPPTRRSDFRVLV 115 Query: 534 NFDPVRTKVVDIERHFQPYGKIANIRIRKN-FAFVQYEMQEDASVAVNKTDKSTILDRVV 710 + P D++ H + G + ++K+ V+Y +ED A+ K D + Sbjct: 116 SGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEG 175 Query: 711 TVEYAFRDDDNERDDRHGSPRQGRDRYGSP--RRGGDRYGSPRR 836 Y + + R G SP RG Y SP R Sbjct: 176 ETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFR 219
>Q08170:SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 - Homo sapiens (Human)| Length = 494 Score = 72.8 bits (177), Expect = 3e-12 Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 26/237 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M V+ G Y+ R+ D+ER F YG I +D+K+GY FV F D RDA+DA+ L+ + Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60 Query: 417 GHSRRRLSVEWS---RQEEPVPKNRD----RPTGAD--AKPTRT---LFVINFDPVRTKV 560 R+ VE + R++ R R +G D PTRT L V N R Sbjct: 61 --CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117 Query: 561 VDIERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV----- 716 D++ + + G++ + RKN +++ D A+ K D + + R + + Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKP 177 Query: 717 ------EYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 Y+ + R R+ R R GS + + S R G R S R+ Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234
>Q8VE97:SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 - Mus musculus (Mouse)| Length = 489 Score = 70.9 bits (172), Expect = 1e-11 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 26/237 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M V+ G Y+ R+ D+ER F YG I +D+K+GY FV F D RDA+DA+ L+ + Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60 Query: 417 GHSRRRLSVEWS---RQEEPVPKNRD----RPTGAD--AKPTRT---LFVINFDPVRTKV 560 R+ VE + R++ R R +G D PTRT L V N R Sbjct: 61 --CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117 Query: 561 VDIERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV----- 716 D++ + + G++ + RKN +++ D A+ K D + + R + + Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKP 177 Query: 717 ------EYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 Y+ + R R+ R R GS + + S R G S R+ Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRS 234
>Q3B7L6:SFRS6_BOVIN Splicing factor, arginine/serine-rich 6 - Bos taurus (Bovine)| Length = 345 Score = 69.3 bits (168), Expect = 4e-11 Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 18/229 (7%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M V+ G Y R+ D++R FS YG + ID+K+GY FV F+D RDA+DA+ L+ E Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60 Query: 417 -----------GHSRRRLSVEWSRQEEPVPKNRDRPTGAD--AKPTRTLF--VINFDPVR 551 G R R + + + R +G D P RT F ++ R Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120 Query: 552 TKVVDIERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 D++ + G++ + R N +++ D A++K D + I R + + Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL-- 178 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 +D R S R R S RR R R R S R+ Sbjct: 179 ---IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
>Q13247:SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 - Homo sapiens (Human)| Length = 344 Score = 68.9 bits (167), Expect = 5e-11 Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 19/230 (8%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M V+ G Y R+ D++R FS YG + +D+K+GY FV F+D RDA+DA+ L+ E Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL 60 Query: 417 -----------GHSRRRLSVEWSRQEEPVPKNRDRPTGAD--AKPTRT---LFVINFDPV 548 G R R + + + R +G D P RT L V N Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119 Query: 549 RTKVVDIERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 R D++ + G++ + R N +++ D A++K D + I R + + Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL- 178 Query: 720 YAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 +D R S R R S RR R R R S R+ Sbjct: 179 ----IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
>Q5R7H2:SFRS1_PONPY Splicing factor, arginine/serine-rich 1 - Pongo pygmaeus| (Orangutan) Length = 248 Score = 68.9 bits (167), Expect = 5e-11 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTR---TLFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R V++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 196 GPRSPSYGRSRSRSRSRSRNRSRSNSRSRSYSPRRSRGSPRY-SPRHS 242
>Q3YLA6:SFRS1_PIG Splicing factor, arginine/serine-rich 1 - Sus scrofa (Pig)| Length = 248 Score = 68.9 bits (167), Expect = 5e-11 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTR---TLFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R V++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 196 GPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-SPRHS 242
>Q6PDM2:SFRS1_MOUSE Splicing factor, arginine/serine-rich 1 - Mus musculus (Mouse)| Length = 248 Score = 68.9 bits (167), Expect = 5e-11 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTR---TLFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R V++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 196 GPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-SPRHS 242
>Q07955:SFRS1_HUMAN Splicing factor, arginine/serine-rich 1 - Homo sapiens (Human)| Length = 248 Score = 68.9 bits (167), Expect = 5e-11 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTR---TLFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R V++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 196 GPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-SPRHS 242
>Q0VCY7:SFRS1_BOVIN Splicing factor, arginine/serine-rich 1 - Bos taurus (Bovine)| Length = 248 Score = 68.9 bits (167), Expect = 5e-11 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 20/228 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTR---TLFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R V++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 196 GPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-SPRHS 242
>P26686:SRR55_DROME Serine-arginine protein 55 - Drosophila melanogaster (Fruit fly)| Length = 376 Score = 67.4 bits (163), Expect = 1e-10 Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 26/234 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF--- 416 V+ G Y R+ DLER F YG R I IK+GY FV F+D RDA+DA+ L+ E Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65 Query: 417 ------------GHSRRRLSVEWSRQE-----EPVPKNRD-RPTGADAKPTRTLFVINFD 542 G +R R + + KN++ R + P RT + + + Sbjct: 66 RVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVE 125 Query: 543 PVRTKV--VDIERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRV 707 + ++V D++ + + G++ + R+N V++ D A+ K D + + R Sbjct: 126 NLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRR 185 Query: 708 VTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 + + D R G +GR R S R R S RR R S R+ Sbjct: 186 I---HLVEDRRGGRSGGGGGSGRGRSRSSSSR---SRSRSRRRSRSRRSSHSRS 233 Score = 40.0 bits (92), Expect = 0.023 Identities = 33/112 (29%), Positives = 46/112 (41%) Frame = +3 Query: 543 PVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 P + D+ER F+ YG+ +I I+ + FV++E DA AV + + +L V VE Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 71 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 A R GS RDRY DRYG + G Sbjct: 72 A-------RGTARGS---NRDRYD----------------DRYGGRRGGGGG 97
>Q6NYA0:SFRS1_DANRE Splicing factor, arginine/serine-rich 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 245 Score = 67.4 bits (163), Expect = 1e-10 Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 18/226 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 74 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNR------DRPTGADAKPTRT---LFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R +++ P Sbjct: 75 GYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 194 Query: 741 NERDDRHGSPR-QGRDRYGSPRRGGDRYGSPR--RGGDRYGSPKRA 869 R +G R + R R S R SPR RG RY SP+ + Sbjct: 195 GPRSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-SPRHS 239
>Q09167:SFRS5_RAT Splicing factor, arginine/serine-rich 5 - Rattus norvegicus (Rat)| Length = 269 Score = 66.2 bits (160), Expect = 3e-10 Identities = 61/211 (28%), Positives = 84/211 (39%), Gaps = 15/211 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF--- 416 VF G + R+ D+ER F YG IR ID+K G+ FV F+D RDA+DA+ L E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65 Query: 417 ------GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT---LFVINFDPVRTKVVDI 569 +R R R + R R +A P RT L V N R D+ Sbjct: 66 RVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQDL 124 Query: 570 ERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 + + G++ R + N V++ D A+ K I R + + Sbjct: 125 KDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKL-------- 176 Query: 741 NERDDRHGSPRQGRDRYGSPRRGGDRYGSPR 833 E RH S + R R S R R S R Sbjct: 177 IEGSKRHRSRSRSRSRTRSSSRSRSRSRSRR 207
>Q9BDY9:RBM4_RABIT RNA-binding protein 4 - Oryctolagus cuniculus (Rabbit)| Length = 359 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRTG 181 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q3MHX3:RBM4_BOVIN RNA-binding protein 4 - Bos taurus (Bovine)| Length = 362 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKTSTKLHVGNISPTCTN-KELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRSG 181 Score = 52.4 bits (124), Expect = 5e-06 Identities = 28/80 (35%), Positives = 38/80 (47%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K T + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q64LC9:RBM4B_RAT RNA-binding protein 4B - Rattus norvegicus (Rat)| Length = 357 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRTG 181 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q06AT9:RBM4B_PIG RNA-binding protein 4B - Sus scrofa (Pig)| Length = 359 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRTG 181 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q8VE92:RBM4B_MOUSE RNA-binding protein 4B - Mus musculus (Mouse)| Length = 357 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRTG 181 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q9BQ04:RBM4B_HUMAN RNA-binding protein 4B - Homo sapiens (Human)| Length = 359 Score = 66.2 bits (160), Expect = 3e-10 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 2/198 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A+ D + + + V+ + D+ G Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCY 163 Query: 771 RQGRDRYGSPRRGGDRYG 824 R G++ + S DR G Sbjct: 164 RCGKEGHWSKECPVDRTG 181 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q8C7Q4:RBM4_MOUSE RNA-binding protein 4 - Mus musculus (Mouse)| Length = 361 Score = 65.9 bits (159), Expect = 4e-10 Identities = 45/151 (29%), Positives = 70/151 (46%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKASTKLHVGNISPTCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKS 689 + I K++AFV E EDA A+ D + Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNT 134 Score = 50.4 bits (119), Expect = 2e-05 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q4R979:RBM4_MACFA RNA-binding protein 4 - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 364 Score = 65.9 bits (159), Expect = 4e-10 Identities = 45/151 (29%), Positives = 70/151 (46%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKTSTKLHVGNISPTCTN-KELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKS 689 + I K++AFV E EDA A+ D + Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNT 134 Score = 52.4 bits (124), Expect = 5e-06 Identities = 28/80 (35%), Positives = 38/80 (47%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K T + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q9BWF3:RBM4_HUMAN RNA-binding protein 4 - Homo sapiens (Human)| Length = 364 Score = 65.9 bits (159), Expect = 4e-10 Identities = 45/151 (29%), Positives = 70/151 (46%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN E + ++ LF +YG + DI Y FV+ +D+ AEDAIR L + + Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 ++VE S+ + +K + L V N P T ++ F+ YG Sbjct: 61 --HGVNINVEASKNK--------------SKTSTKLHVGNISPTCTN-KELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKS 689 + I K++AFV E EDA A+ D + Sbjct: 104 VIECDIVKDYAFVHMERAEDAVEAIRGLDNT 134 Score = 52.4 bits (124), Expect = 5e-06 Identities = 28/80 (35%), Positives = 38/80 (47%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+ K T + GN +L F +YGP+ DI YAFV+ + DA +AIR Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N EF R + + SR Sbjct: 130 GLDNTEFQGKRMHVQLSTSR 149
>Q94901:LARK_DROME RNA-binding protein lark - Drosophila melanogaster (Fruit fly)| Length = 352 Score = 65.9 bits (159), Expect = 4e-10 Identities = 39/144 (27%), Positives = 65/144 (45%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 +F GN D +T+ ++L LF KYG + D+ Y FV+ + E+ DAI+ L+ Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEF 68 Query: 426 RRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIAN 605 ++ SR+ A PT +FV N +T+ ++ FQ YG + Sbjct: 69 AIKVEAAKSRR-------------APNTPTTKIFVGNLTD-KTRAPEVRELFQKYGTVVE 114 Query: 606 IRIRKNFAFVQYEMQEDASVAVNK 677 I +N+ FV + D A+ + Sbjct: 115 CDIVRNYGFVHLDCVGDVQDAIKE 138 Score = 45.1 bits (105), Expect = 7e-04 Identities = 23/70 (32%), Positives = 34/70 (48%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 +F GN +TR ++ LF KYG + DI Y FV+ D +DAI+ L+ Sbjct: 88 IFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQ 147 Query: 426 RRRLSVEWSR 455 ++ V SR Sbjct: 148 PLKVQVSTSR 157 Score = 36.2 bits (82), Expect = 0.34 Identities = 19/71 (26%), Positives = 35/71 (49%) Frame = +3 Query: 513 TRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKST 692 T LF+ N D +T+ ++ F+ YG + + KN+ FV E ++ A+ + T Sbjct: 6 TFKLFIGNLDE-KTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 693 ILDRVVTVEYA 725 + + + VE A Sbjct: 65 LNEFAIKVEAA 75
>Q13243:SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 - Homo sapiens (Human)| Length = 272 Score = 65.1 bits (157), Expect = 7e-10 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 15/223 (6%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF--- 416 VF G + R+ D+ER F YG IR ID+K G+ FV F+D RDA+DA+ L E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65 Query: 417 ------GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT---LFVINFDPVRTKVVDI 569 +R R R + R R +A P RT L V N R D+ Sbjct: 66 RVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQDL 124 Query: 570 ERHFQPYGKIANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 + + G++ R + N V++ D A+ K I R + + + Sbjct: 125 KDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKL-----IEG 179 Query: 741 NERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRA 869 ++R R S + R R S R R S R+ R S R+ Sbjct: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRS-RKSYSRSRSRSRS 221
>Q6IQ97:RBM4_DANRE RNA-binding protein 4 - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 419 Score = 63.9 bits (154), Expect = 2e-09 Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 3/217 (1%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M +F GN T ++ LFS+YG I DI + FV+ + +A++AI+ L + + Sbjct: 1 MVKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--Y 58 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 + ++VE S+ K + L V N T ++ F+ YG Sbjct: 59 MLNGMAMNVEMSK--------------GKPKTSTKLHVGNISSSCTN-QELRAKFEEYGP 103 Query: 597 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR--DDDNERDDRHGSP 770 + I K++AFV E EDA A++ D + ++++V+ + +R G Sbjct: 104 VVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCY 163 Query: 771 RQGRDRYGSPRRGGDRYGSPRRGGDRYG-SPKRANQG 878 R G++ + S D+ GS R G G P R + G Sbjct: 164 RCGQEGHWSKECPLDQNGSYREGPSSEGFGPVRFDSG 200 Score = 46.6 bits (109), Expect = 3e-04 Identities = 26/80 (32%), Positives = 36/80 (45%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIR 395 S+GK T + GN +L F +YGP+ DI YAFV+ + DA +AI Sbjct: 70 SKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAIS 129 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 L N F + + SR Sbjct: 130 GLDNTAFQGKLMSVKLSTSR 149
>Q7SXP4:SF1L1_DANRE Splicing factor, arginine/serine-rich 1-like protein 1 - Danio| rerio (Zebrafish) (Brachydanio rerio) Length = 245 Score = 62.4 bits (150), Expect = 4e-09 Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 29/234 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YARD 74 Query: 411 EFGHSRRRLSVEWSRQEEPVPK-----------------NRDRPTGADAKPTRT---LFV 530 + + RL VE+ R + + P G P+R + Sbjct: 75 GYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVI 134 Query: 531 INFDPVRTKVVDIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRV 707 ++ P D++ H + G + + R V++ +ED + AV K D + Sbjct: 135 VSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 194 Query: 708 VTVEYAFRDDDNERDDRHGSPR---QGRDRYGSPRRGGDRYGSPRRGGDRYGSP 860 Y D R +G R + R R S R SPRR GSP Sbjct: 195 GETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRS---RGSP 245
>Q10021:RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 - Caenorhabditis| elegans Length = 208 Score = 61.6 bits (148), Expect = 8e-09 Identities = 34/84 (40%), Positives = 44/84 (52%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 M ++ G Y R+ D+ER YG I I +K G+AFV F+D RDAEDA L Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTM 60 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDR 488 S RL VE +R + P+ DR Sbjct: 61 EGSSMRLVVEMARGK---PRGNDR 81 Score = 53.1 bits (126), Expect = 3e-06 Identities = 38/111 (34%), Positives = 52/111 (46%) Frame = +3 Query: 543 PVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 P + D+ER + YGKI NI ++ FAFV +E DA A + D T+ + + Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQ 875 +DRHGS R R R SPRR R +P R R KR+ + Sbjct: 70 EMARGKPRGNDRHGS-RSPRRRSRSPRR---RSRTPPRRRSRSRDRKRSRR 116
>O35326:SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 - Mus musculus (Mouse)| Length = 270 Score = 61.2 bits (147), Expect = 1e-08 Identities = 32/81 (39%), Positives = 45/81 (55%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 VF G + R+ D+ER F YG IR ID+K G+ FV F+D RDA+DA+ L E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL--C 63 Query: 426 RRRLSVEWSRQEEPVPKNRDR 488 R+++E +R + R R Sbjct: 64 SERVTIEHARARSRGGRGRGR 84 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = +3 Query: 564 DIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 D+ER F+ YG+I +I +++ F FV++E DA AV + D + VT+E+A Sbjct: 19 DVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA------ 72 Query: 744 ERDDRHGSPRQGR--DRYGSPRRGGDR 818 R G +GR DR G DR Sbjct: 73 -RARSRGGRGRGRYSDRLAVADLGNDR 98
>Q5ZML3:SFRS1_CHICK Splicing factor, arginine/serine-rich 1 - Gallus gallus (Chicken)| Length = 257 Score = 60.8 bits (146), Expect = 1e-08 Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPVPK------NRDRPTGADAKPTRT---LFVINFDPVRTKVV 563 + + RL VE+ R + P G P+R +++ P Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135 Query: 564 DIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 D++ H + G + + R V++ +ED + AV K D + Y D Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195 Query: 741 NERDDRHGSPR 773 R +G R Sbjct: 196 GPRSPSYGRSR 206
>Q6DII2:SFRS1_XENTR Splicing factor, arginine/serine-rich 1 - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 267 Score = 59.7 bits (143), Expect = 3e-08 Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 39/247 (15%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLSNA 410 ++ GN + R D+E +F KYG IR ID+K+ +AFV F+D RDAEDA+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV--YGRD 75 Query: 411 EFGHSRRRLSVEWSRQEEPV-------------------------PKNRDRPTGADAKPT 515 + + RL VE+ R P G P+ Sbjct: 76 GYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPS 135 Query: 516 RT---LFVINFDPVRTKVVDIERHFQPYGKIANIRI-RKNFAFVQYEMQEDASVAVNKTD 683 R V++ P D++ H + G + + R V++ +ED + AV K D Sbjct: 136 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLD 195 Query: 684 KSTILDRVVTVEYAFRDDDNERDDRHGSPR---QGRDRYGSPRRGGDRYGSPR--RGGDR 848 + Y D R +G R + R R S R SPR RG R Sbjct: 196 NTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPR 255 Query: 849 YGSPKRA 869 Y SP+ + Sbjct: 256 Y-SPRHS 261
>P20397:NUCL_XENLA Nucleolin - Xenopus laevis (African clawed frog)| Length = 651 Score = 59.7 bits (143), Expect = 3e-08 Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 11/218 (5%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 N Y + L +F K IR + G+AF+ F DA+DA+ +N E Sbjct: 421 NLSYSATEDSLREVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEI--EG 478 Query: 429 RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANI 608 R + +E+S+ P R G A+ ++TLFV T+ E + + N Sbjct: 479 RSIRLEFSQGGGPQGGGR----GGSAQ-SKTLFVRGLSEDTTE----ETLKEAFDGSVNA 529 Query: 609 RI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHG 764 RI K F FV + EDA A + I VT+++A D++R R G Sbjct: 530 RIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGRGG 589 Query: 765 SPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 R G R G RGG G R G R G R G Sbjct: 590 FGRGGGFRGGRGGRGG---GGGRGFGGRGGGRGRGGFG 624
>Q23120:RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 - Caenorhabditis| elegans Length = 281 Score = 59.3 bits (142), Expect = 4e-08 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 22/229 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF--- 416 V+ G D+E F YG + + +K+G+ FV FQD+RDA+DA+ L+ E Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGE 63 Query: 417 -----------GHSRRRLSVEWSRQEEPVPKNRDRP-TGADAKPTRTLFVINFDPVRTKV 560 G++ R + +E K +R + ++P T F + D + T+ Sbjct: 64 RVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRY 123 Query: 561 --VDIERHFQPYGKIANI----RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 DI+ H + G + N A V + +D A+NK + R + Sbjct: 124 SWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTD 183 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRG-GDRYGSPKR 866 RD R R S + R SP GS R R SPK+ Sbjct: 184 ETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKK 232
>Q8BL97:SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 - Mus musculus (Mouse)| Length = 267 Score = 58.5 bits (140), Expect = 6e-08 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Frame = +3 Query: 198 WLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQD 368 WL G +SE K V+ GN + +LER FS YGP+R + I G+AFV F+D Sbjct: 32 WLWGGDSETK------VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFED 85 Query: 369 ERDAEDAIRRLSNAEFGHSRRRLSV 443 RDAEDA+R L SR R+ + Sbjct: 86 PRDAEDAVRGLDGKVICGSRVRVEL 110
>P27476:NSR1_YEAST Nuclear localization sequence-binding protein - Saccharomyces| cerevisiae (Baker's yeast) Length = 414 Score = 55.1 bits (131), Expect = 7e-07 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 19/222 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRL 401 +F G + L++ F G + R D GY +V F+++ AE AI+ + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTG-ADAKPTRTLFV--INFDPVRTKVVDIE 572 E R ++ + S + +R + G ++P+ TLF+ ++F+ R + ++ Sbjct: 230 QGKEI--DGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL- 286 Query: 573 RHFQPYGKIANIRIR--------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAF 728 F +G++ ++RI K F +VQ+ EDA A++ I +R V ++++ Sbjct: 287 --FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344 Query: 729 RDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYG 854 +N D G R R G RGG+R G RGG R G Sbjct: 345 PRPNN--DGGRGGSRGFGGRGGG--RGGNR-GFGGRGGARGG 381
>O60812:HNRCL_HUMAN Heterogeneous nuclear ribonucleoprotein C-like 1 - Homo sapiens| (Human) Length = 293 Score = 55.1 bits (131), Expect = 7e-07 Identities = 33/102 (32%), Positives = 47/102 (46%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKIA + K FAFVQY+ +++A AV D I Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +VV + A P+ R G R + YGS Sbjct: 78 QVVDINLA------------AEPKVNRGNAGVKRSAAEMYGS 107 Score = 42.0 bits (97), Expect = 0.006 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + ++SD+E +FSKYG I + G+AFV + E++A A+ Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAV 67
>Q23121:RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 - Caenorhabditis| elegans Length = 312 Score = 54.7 bits (130), Expect = 9e-07 Identities = 24/61 (39%), Positives = 35/61 (57%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 ++ G + D+E F YG IR + +K+G+ FV F D+RDAEDA+ L+ E G Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGE 64 Query: 426 R 428 R Sbjct: 65 R 65 Score = 45.1 bits (105), Expect = 7e-04 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%) Frame = +3 Query: 549 RTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAF 728 R DIE F+ YG+I ++ ++ F FV+++ + DA AV+ + + V ++Y+ Sbjct: 13 RVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS- 71 Query: 729 RDDDNERDDRHGSPRQG---RDRYGSPRRGGDRYGSPRRGG-------DRY--GSPKRAN 872 PR G R +G RGG R S GG DRY G P+R + Sbjct: 72 ------------KPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119 Query: 873 Q 875 + Sbjct: 120 R 120
>Q13310:PABP4_HUMAN Polyadenylate-binding protein 4 - Homo sapiens (Human)| Length = 644 Score = 54.7 bits (130), Expect = 9e-07 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 13/170 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 VF N D L FS +G I + GYAFV+F+ + A+ AI +++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 + + SR+E R+ GA AK +++ NF ++ F Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGAKAKEFTNVYIKNFGE-EVDDESLKELFSQ 213 Query: 588 YGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 +GK ++++ K F FV YE EDA+ AV + + I +++ V Sbjct: 214 FGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263 Score = 45.8 bits (107), Expect = 4e-04 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GP+ I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRD---PSLRKSGVG-------NVFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K +AFV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>P15771:NUCL_CHICK Nucleolin - Gallus gallus (Chicken)| Length = 694 Score = 54.7 bits (130), Expect = 9e-07 Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 9/223 (4%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSG----YAFVYFQDER 374 G E E K L + N Y + L+ LF K I+ G YAFV F Sbjct: 455 GGERESKTLIVN-----NLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAE 509 Query: 375 DAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRT 554 DA++A+ +N E R + +E+S K G + ++TLFV T Sbjct: 510 DAKEALNSCNNTEI--EGRAIRLEFSSPSWQ--KGNMNARGGFNQQSKTLFVRGLSEDTT 565 Query: 555 KVVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + + F+ + R K F FV + EDA A + I VT++ Sbjct: 566 EET-LRESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLD 624 Query: 720 YAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR 848 +A + +R G GR G RGG R G RGG R Sbjct: 625 FAKPKGEFQRGGGFGGGFGGRGGRGG--RGGGRGGFGGRGGGR 665 Score = 45.4 bits (106), Expect = 6e-04 Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 11/173 (6%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSG----YAFVYFQDERDAEDAIRRLSN 407 R +F N Y + +++ +F +R + K G A++ F+ E +AE A+ Sbjct: 371 RTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 E R + ++++ ++ ++ G + ++TL V N ++ E + Sbjct: 431 TEV--DGRAMVIDYTGEKS----QQESQKGGGERESKTLIVNNLSYAASE----ETLQEL 480 Query: 588 YGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 + K +I++ +N +AFV++ EDA A+N + + I R + +E++ Sbjct: 481 FKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFS 533
>Q62504:MINT_MOUSE Msx2-interacting protein - Mus musculus (Mouse)| Length = 3644 Score = 54.7 bits (130), Expect = 9e-07 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 9/174 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLS 404 R +F GN + T DL +F ++G I IDIK YAF+ + D AI+++ Sbjct: 439 RTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMD 498 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD--IERH 578 G++R +L + PT +++ D + + V D + RH Sbjct: 499 GEYLGNNRLKLGF------------------GKSMPTNCVWL---DGLSSNVSDQYLTRH 537 Query: 579 FQPYGKIANIRI--RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD 734 F YG + + K A V Y EDA AV +T I + V++A R+ Sbjct: 538 FCRYGPVVKVVFDRLKGMALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFANRE 591
>P52912:TIA1_MOUSE Nucleolysin TIA-1 - Mus musculus (Mouse)| Length = 386 Score = 53.9 bits (128), Expect = 2e-06 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 20/175 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 VF G+ E D++ F+ +G I + GY FV F ++ DAE+AI+++ Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNR----------DRPTGADAKPTRTLFVINFDPVR 551 G R++ W+ ++ P PK+ D + T++ Sbjct: 168 GGQWLG--GRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225 Query: 552 TKVVDIERHFQPYGKIANIRI--RKNFAFVQYEMQEDASVAVNKTDKSTILDRVV 710 T+ + + + F P+G+I IR+ K ++FV++ E A+ A+ + +TI VV Sbjct: 226 TEQL-MRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVV 279 Score = 44.3 bits (103), Expect = 0.001 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 17/181 (9%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRL 401 + ++ GN + ++ + +LFS+ GP + + Y FV F + R A A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT---LFVINFDPVRTKVVDIE 572 + + + + V W+ K+ T + ++ +FV + P T DI+ Sbjct: 67 NGRKI--MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT-TEDIK 123 Query: 573 RHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAF 728 F P+G+I++ R+ K + FV + + DA A+ + + R + +A Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183 Query: 729 R 731 R Sbjct: 184 R 184
>P31483:TIA1_HUMAN Nucleolysin TIA-1 isoform p40 - Homo sapiens (Human)| Length = 386 Score = 53.5 bits (127), Expect = 2e-06 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 VF G+ + D++ F+ +G I + GY FV F ++ DAE+AI+++ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNR----------DRPTGADAKPTRTLFVINFDPVR 551 G R++ W+ ++ P PK+ D + T++ Sbjct: 168 GGQWLG--GRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225 Query: 552 TKVVDIERHFQPYGKIANIRI--RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 T+ + + + F P+G+I IR+ K ++FV++ E A+ A+ + +TI VV + Sbjct: 226 TEQL-MRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284 Query: 726 FRDDDNERDDRHGSPRQGRDRYGSPR---RGGDRYGSPRRGG 842 D +P Q +++ G P+ + G YG+ ++ G Sbjct: 285 KETLDMI------NPVQQQNQIGYPQPYGQWGQWYGNAQQIG 320 Score = 44.7 bits (104), Expect = 0.001 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 17/181 (9%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRL 401 + ++ GN + ++ + +LFS+ GP + + Y FV F + R A A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT---LFVINFDPVRTKVVDIE 572 + + + + V W+ K+ T + ++ +FV + P T DI+ Sbjct: 67 NGRKI--MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQIT-TEDIK 123 Query: 573 RHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAF 728 F P+G+I++ R+ K + FV + + DA A+ + + R + +A Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183 Query: 729 R 731 R Sbjct: 184 R 184
>Q16629:SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 - Homo sapiens (Human)| Length = 238 Score = 53.5 bits (127), Expect = 2e-06 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN + +LER FS YGP+R + I G+AFV F+D RDAEDA+R L Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72 Query: 417 GHSRRRLSV 443 SR R+ + Sbjct: 73 CGSRVRVEL 81
>Q3T106:SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 - Bos taurus (Bovine)| Length = 235 Score = 53.5 bits (127), Expect = 2e-06 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN + +LER FS YGP+R + I G+AFV F+D RDAEDA+R L Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72 Query: 417 GHSRRRLSV 443 SR R+ + Sbjct: 73 CGSRVRVEL 81
>Q02427:RBP1_DROME RNA-binding protein 1 - Drosophila melanogaster (Fruit fly)| Length = 144 Score = 52.8 bits (125), Expect = 4e-06 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN + ++E F+KYGP+R + + G+AFV F+D RDAEDA R L Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 +R R+ + R +RDR G R+ Sbjct: 73 CGTRIRVEMSSGR-------SRDRRRGEGGSSGRS 100
>O43390:HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R - Homo sapiens (Human)| Length = 633 Score = 52.8 bits (125), Expect = 4e-06 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQ-EEPVPKNRDRPTGADAKPTR 518 G+ F+ ++D + A A RRL + + ++VEW+ EEP P+ + + Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAK--------VK 341 Query: 519 TLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTIL 698 LFV N T+ + +E+ F +GK+ ++ K++AFV +E + A A+++ + I Sbjct: 342 VLFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIE 400 Query: 699 DRVVTVEYAFRDDDNERDDRHGSPRQGRD------------RYGSPRRGGDRYGSPRRGG 842 + + A + D +R +R + + R R P RG R G RGG Sbjct: 401 GEEIEIVLA-KPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGG--RGG 457 Query: 843 DRYGSP 860 YG P Sbjct: 458 --YGYP 461 Score = 45.8 bits (107), Expect = 4e-04 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 14/174 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 VF G + + +L LF K GPI + + GYAF+ F + A++A++ Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226 Query: 402 SNAEF---GHSRRRLSVEWSRQ-EEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDI 569 + E H +SV +R +PKN+ T+ + F V +VD+ Sbjct: 227 DSYEIRPGKHLGVCISVANNRLFVGSIPKNK----------TKENILEEFSKVTEGLVDV 276 Query: 570 ERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNK--TDKSTILDRVVTVEYA 725 + QP K N + F F++YE + A+ A + + K + VVTVE+A Sbjct: 277 ILYHQPDDKKKN----RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA 326 Score = 35.0 bits (79), Expect = 0.76 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAE 413 ++ +F N + LE+ FS++G + R+ YAFV+F+D A A+ ++ E Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 398
>P32588:PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 -| Saccharomyces cerevisiae (Baker's yeast) Length = 453 Score = 52.4 bits (124), Expect = 5e-06 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Frame = +3 Query: 417 GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 596 G+S + + VP N TG R L+V N D T+ + ++++FQ G Sbjct: 44 GNSEQAEDNQGENDPSVVPANAI--TGGRETSDRVLYVGNLDKAITEDI-LKQYFQVGGP 100 Query: 597 IANIRI-------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDD 755 IANI+I N+AFV+Y DA++A+ + I + +V + +AF+ + DD Sbjct: 101 IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDD 160 Score = 47.4 bits (111), Expect = 1e-04 Identities = 46/214 (21%), Positives = 88/214 (41%), Gaps = 15/214 (7%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDA 380 G+ + R ++ GN D + L++ F GPI I I YAFV + DA Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDA 128 Query: 381 EDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKV 560 A++ L+ + ++ + + W+ Q + + + T LFV + + V Sbjct: 129 NIALQTLNGKQIENNI--VKINWAFQSQQ----------SSSDDTFNLFVGDLN-VNVDD 175 Query: 561 VDIERHFQPYGKIANIRIR--------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F+ + + + + + FV + Q+DA A++ + R + + Sbjct: 176 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235 Query: 717 EYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDR 818 +A + D+N ++ Q R YG+ RGG R Sbjct: 236 NWAAKRDNNNNNN-----YQQRRNYGNNNRGGFR 264
>Q7TP47:HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q - Rattus norvegicus (Rat)| Length = 533 Score = 52.4 bits (124), Expect = 5e-06 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQ-EEPVPKNRDRPTGADAKPTR 518 G+ F+ ++D + A A RRL + + +VEW+ E+P P+ + + Sbjct: 197 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAK--------VK 248 Query: 519 TLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTIL 698 LFV N T+ + +E+ F +GK+ ++ K++AF+ ++ ++ A A+ + + + Sbjct: 249 VLFVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307 Query: 699 DRVVTVEYAFRDDDNERDDRHGSPRQGRDR-------YGSPRRGGDRYGSPRRGGDRYGS 857 + + +A + D +R +R + +++ YG P G R G YG Sbjct: 308 GENIEIVFA-KPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 366 Query: 858 P 860 P Sbjct: 367 P 367 Score = 45.1 bits (105), Expect = 7e-04 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRI--------DIKSGYAFVYFQDERDAEDAIRRL 401 +F G + + +L LF K GPI + + GYAFV F + A++A++ Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 133 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 +N E S + + V S V NR T+ + F V + D+ + Sbjct: 134 NNHEI-RSGKHIGVCIS-----VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187 Query: 582 QPYGKIANIRIRKNFAFVQYEMQEDASVAVNK--TDKSTILDRVVTVEYA--FRDDDNE 746 QP K N + F F++YE + A+ A + + K + V TVE+A D D E Sbjct: 188 QPDDKKKN----RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE 242
>Q7TMK9:HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q - Mus musculus (Mouse)| Length = 623 Score = 52.4 bits (124), Expect = 5e-06 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQ-EEPVPKNRDRPTGADAKPTR 518 G+ F+ ++D + A A RRL + + +VEW+ E+P P+ + + Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAK--------VK 338 Query: 519 TLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTIL 698 LFV N T+ + +E+ F +GK+ ++ K++AF+ ++ ++ A A+ + + + Sbjct: 339 VLFVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397 Query: 699 DRVVTVEYAFRDDDNERDDRHGSPRQGRDR-------YGSPRRGGDRYGSPRRGGDRYGS 857 + + +A + D +R +R + +++ YG P G R G YG Sbjct: 398 GENIEIVFA-KPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 456 Query: 858 P 860 P Sbjct: 457 P 457 Score = 45.1 bits (105), Expect = 7e-04 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRI--------DIKSGYAFVYFQDERDAEDAIRRL 401 +F G + + +L LF K GPI + + GYAFV F + A++A++ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 +N E S + + V S V NR T+ + F V + D+ + Sbjct: 224 NNHEI-RSGKHIGVCIS-----VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277 Query: 582 QPYGKIANIRIRKNFAFVQYEMQEDASVAVNK--TDKSTILDRVVTVEYA--FRDDDNE 746 QP K N + F F++YE + A+ A + + K + V TVE+A D D E Sbjct: 278 QPDDKKKN----RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE 332
>P84104:SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 - Mus musculus (Mouse)| Length = 164 Score = 52.0 bits (123), Expect = 6e-06 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN +++LER F YGP+R + + G+AFV F+D RDA DA+R L Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71 Query: 417 GHSRRRLSV----EWSRQEEPVPKNRDRP 491 R R+ + + SR P P RP Sbjct: 72 CGCRVRVELSNGEKRSRNRGPPPSWGRRP 100
>P84103:SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 - Homo sapiens (Human)| Length = 164 Score = 52.0 bits (123), Expect = 6e-06 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN +++LER F YGP+R + + G+AFV F+D RDA DA+R L Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71 Query: 417 GHSRRRLSV----EWSRQEEPVPKNRDRP 491 R R+ + + SR P P RP Sbjct: 72 CGCRVRVELSNGEKRSRNRGPPPSWGRRP 100
>Q3SZR8:SFRS3_BOVIN Splicing factor, arginine/serine-rich 3 - Bos taurus (Bovine)| Length = 164 Score = 52.0 bits (123), Expect = 6e-06 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN +++LER F YGP+R + + G+AFV F+D RDA DA+R L Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71 Query: 417 GHSRRRLSV----EWSRQEEPVPKNRDRP 491 R R+ + + SR P P RP Sbjct: 72 CGCRVRVELSNGEKRSRNRGPPPSWGRRP 100
>Q8C2Q3:RBM14_MOUSE RNA-binding protein 14 - Mus musculus (Mouse)| Length = 669 Score = 52.0 bits (123), Expect = 6e-06 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGH 422 +F GN D +T +L LF+ YG + + +AFV+ ++ A AI L E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61 Query: 423 SRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIA 602 R L VE SR P P N T +FV N T ++ F+ G++ Sbjct: 62 PGRALVVEMSR---PRPLN-----------TWKIFVGNVSAACTS-QELRSLFERRGRVI 106 Query: 603 NIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + K++AFV E + DA A+ + + + + + VE Sbjct: 107 ECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 145
>Q5EA36:RBM14_BOVIN RNA-binding protein 14 - Bos taurus (Bovine)| Length = 669 Score = 52.0 bits (123), Expect = 6e-06 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGH 422 +F GN D +T +L LF+ YG + + +AFV+ ++ A AI L E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61 Query: 423 SRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIA 602 R L VE SR P P N T +FV N T ++ F+ G++ Sbjct: 62 PGRALVVEMSR---PRPLN-----------TWKIFVGNVSAACTS-QELRSLFERRGRVI 106 Query: 603 NIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + K++AFV E + DA A+ + + + + + VE Sbjct: 107 ECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 145
>P08199:NUCL_MESAU Nucleolin - Mesocricetus auratus (Golden hamster)| Length = 714 Score = 52.0 bits (123), Expect = 6e-06 Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Frame = +3 Query: 210 WESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG----PIRRIDIKSGYAFVYFQDERD 377 W E K L + N Y + L+ +F K P + GYAF+ F D Sbjct: 481 WSGESKTLVL-----SNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFED 535 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTK 557 A++A+ + E RL ++ R A ++P++TLFV T+ Sbjct: 536 AKEALNSCNKMEIEGRTIRLELQGPRGSP----------NARSQPSKTLFVKGLSEDTTE 585 Query: 558 VVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ F+ + + R K F FV + +EDA A + I VT+++ Sbjct: 586 ET-LKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 644 Query: 723 AFRDDDNERDDRHGSPRQGRDRYG--SPRRGGDRYGSPRRGGDRYG 854 A + R G GR +G RGG R G RG +G Sbjct: 645 AKPKGEGGFGGRGG----GRGGFGGRGGGRGGGRGGFGGRGRGGFG 686
>O60506:HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q - Homo sapiens (Human)| Length = 623 Score = 52.0 bits (123), Expect = 6e-06 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQ-EEPVPKNRDRPTGADAKPTR 518 G+ F+ ++D + A A RRL + + +VEW+ E+P P+ + + Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAK--------VK 338 Query: 519 TLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTIL 698 LFV N T+ + +E+ F +GK+ ++ K++AF+ ++ ++ A A+ + + + Sbjct: 339 VLFVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397 Query: 699 DRVVTVEYAFRDDDNERDDRHGSPRQGRDR-------YGSPRRGGDRYGSPRRGGDRYGS 857 + + +A + D +R +R + +++ YG P G R G YG Sbjct: 398 GENIEIVFA-KPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 456 Query: 858 P 860 P Sbjct: 457 P 457 Score = 45.1 bits (105), Expect = 7e-04 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRI--------DIKSGYAFVYFQDERDAEDAIRRL 401 +F G + + +L LF K GPI + + GYAFV F + A++A++ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 +N E S + + V S V NR T+ + F V + D+ + Sbjct: 224 NNHEI-RSGKHIGVCIS-----VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277 Query: 582 QPYGKIANIRIRKNFAFVQYEMQEDASVAVNK--TDKSTILDRVVTVEYA--FRDDDNE 746 QP K N + F F++YE + A+ A + + K + V TVE+A D D E Sbjct: 278 QPDDKKKN----RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE 332
>P19600:HNRPC_XENLA Heterogeneous nuclear ribonucleoprotein C - Xenopus laevis (African| clawed frog) Length = 282 Score = 52.0 bits (123), Expect = 6e-06 Identities = 31/102 (30%), Positives = 44/102 (43%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKI + K FAFVQ+ + A AV D I Sbjct: 19 VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRMIAG 78 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +V+ + A P+ R + G R D YGS Sbjct: 79 QVLDINLA------------AEPKANRSKTGVKRSAADMYGS 108 Score = 42.7 bits (99), Expect = 0.004 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + +++D+E +FSKYG I + G+AFV F +ER A A+ Sbjct: 19 VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAV 68
>Q08473:SQD_DROME RNA-binding protein squid - Drosophila melanogaster (Fruit fly)| Length = 344 Score = 51.6 bits (122), Expect = 8e-06 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 23/228 (10%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIR 395 R +F G +ET + +L F KYG I I++K+ G+AF+ F + +AI Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN----TEAID 111 Query: 396 RLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD--I 569 ++S A+ E + + P A A+ + +FV + T++ D I Sbjct: 112 KVSAAD---------------EHIINSKKVDPKKAKARHGK-IFV---GGLTTEISDEEI 152 Query: 570 ERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 + +F +G I + + RK F F+ ++ E + KT K I + V V+ A Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFD-SEQVVTDLLKTPKQKIAGKEVDVKRA 211 Query: 726 FRDDDNE-----RDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYG 854 +N+ R G R GR YG RGG Y + G YG Sbjct: 212 TPKPENQMMGGMRGGPRGGMRGGRGGYGG--RGG--YNNQWDGQGSYG 255
>Q5RC41:RBM14_PONPY RNA-binding protein 14 - Pongo pygmaeus (Orangutan)| Length = 669 Score = 51.6 bits (122), Expect = 8e-06 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGH 422 +F GN D +T +L LF+ YG + + +AFV+ ++ A AI L E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61 Query: 423 SRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIA 602 R L VE SR P P N T +FV N T ++ F+ G++ Sbjct: 62 PGRALVVEMSR---PRPLN-----------TWKIFVGNVSAACTS-QELRSLFERRGRVI 106 Query: 603 NIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + K++AFV E + DA A+ + + + + + VE Sbjct: 107 ECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 145
>Q96PK6:RBM14_HUMAN RNA-binding protein 14 - Homo sapiens (Human)| Length = 669 Score = 51.6 bits (122), Expect = 8e-06 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGH 422 +F GN D +T +L LF+ YG + + +AFV+ ++ A AI L E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61 Query: 423 SRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIA 602 R L VE SR P P N T +FV N T ++ F+ G++ Sbjct: 62 PGRALVVEMSR---PRPLN-----------TWKIFVGNVSAACTS-QELRSLFERRGRVI 106 Query: 603 NIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + K++AFV E + DA A+ + + + + + VE Sbjct: 107 ECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 145
>Q5RF26:NUCL_PONPY Nucleolin - Pongo pygmaeus (Orangutan)| Length = 712 Score = 51.6 bits (122), Expect = 8e-06 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 9/220 (4%) Frame = +3 Query: 210 WESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG----PIRRIDIKSGYAFVYFQDERD 377 W E K L + N Y + L+ +F K P + GYAF+ F D Sbjct: 483 WSGESKTLVL-----SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFED 537 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTK 557 A++A+ + E RL ++ R A ++P++TLFV T+ Sbjct: 538 AKEALNSCNKREIEGRAIRLELQGPRGS----------PNARSQPSKTLFVKGLSEDTTE 587 Query: 558 VVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ F + + R K F FV + +EDA A + I VT+++ Sbjct: 588 ET-LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 646 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A + R G R G G R G +G RGG Sbjct: 647 AKPKGEGGFGGR-GGGRGGFGGRGGGRGGRGGFGGRGRGG 685 Score = 43.9 bits (102), Expect = 0.002 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI--DIKS-GYAFVYFQDERDAEDAIRRLSNA 410 R + N Y+ Q +L+ +F IR + D KS G A++ F+ E DAE Sbjct: 395 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGT 454 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPY 590 E R +S+ ++ ++ R + ++TL + N T+ E + + Sbjct: 455 EI--DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE----ETLQEVF 508 Query: 591 GKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 K I++ +N +AF+++ EDA A+N +K I R + +E Sbjct: 509 EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 558
>Q4R4J7:NUCL_MACFA Nucleolin - Macaca fascicularis (Crab eating macaque) (Cynomolgus| monkey) Length = 711 Score = 51.6 bits (122), Expect = 8e-06 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 9/220 (4%) Frame = +3 Query: 210 WESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG----PIRRIDIKSGYAFVYFQDERD 377 W E K L + N Y + L+ +F K P + GYAF+ F D Sbjct: 482 WSGESKTLVL-----SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFED 536 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTK 557 A++A+ + E RL ++ R A ++P++TLFV T+ Sbjct: 537 AKEALNSCNKREIEGRAIRLELQGPRGS----------PNARSQPSKTLFVKGLSEDTTE 586 Query: 558 VVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ F + + R K F FV + +EDA A + I VT+++ Sbjct: 587 ET-LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 645 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A + R G R G G R G +G RGG Sbjct: 646 AKPKGEGGFGGR-GGGRGGFGGRGGGRGGRGGFGGRGRGG 684 Score = 43.9 bits (102), Expect = 0.002 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI--DIKS-GYAFVYFQDERDAEDAIRRLSNA 410 R + N Y+ Q +L+ +F IR + D KS G A++ F+ E DAE Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGT 453 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPY 590 E R +S+ ++ ++ R + ++TL + N T+ E + + Sbjct: 454 EI--DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE----ETLQEVF 507 Query: 591 GKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 K I++ +N +AF+++ EDA A+N +K I R + +E Sbjct: 508 EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 557
>P19338:NUCL_HUMAN Nucleolin - Homo sapiens (Human)| Length = 710 Score = 51.6 bits (122), Expect = 8e-06 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 9/220 (4%) Frame = +3 Query: 210 WESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG----PIRRIDIKSGYAFVYFQDERD 377 W E K L + N Y + L+ +F K P + GYAF+ F D Sbjct: 481 WSGESKTLVL-----SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFED 535 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTK 557 A++A+ + E RL ++ R A ++P++TLFV T+ Sbjct: 536 AKEALNSCNKREIEGRAIRLELQGPRGS----------PNARSQPSKTLFVKGLSEDTTE 585 Query: 558 VVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ F + + R K F FV + +EDA A + I VT+++ Sbjct: 586 ET-LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 644 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A + R G R G G R G +G RGG Sbjct: 645 AKPKGEGGFGGR-GGGRGGFGGRGGGRGGRGGFGGRGRGG 683 Score = 43.9 bits (102), Expect = 0.002 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI--DIKS-GYAFVYFQDERDAEDAIRRLSNA 410 R + N Y+ Q +L+ +F IR + D KS G A++ F+ E DAE Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGT 452 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPY 590 E R +S+ ++ ++ R + ++TL + N T+ E + + Sbjct: 453 EI--DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE----ETLQEVF 506 Query: 591 GKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 K I++ +N +AF+++ EDA A+N +K I R + +E Sbjct: 507 EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 556
>Q6PHZ5:RB15B_MOUSE Putative RNA-binding protein 15B - Mus musculus (Mouse)| Length = 564 Score = 51.2 bits (121), Expect = 1e-05 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 11/188 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK-------SGYAFVYFQDERDAEDAIRR 398 R +F GN D+ + +L R F KYG I + IK YAF+ FQ+ A A Sbjct: 10 RNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVA 69 Query: 399 LSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERH 578 +S G R + + + + A PT L+V P T + + R Sbjct: 70 MSGRVIG--RNPIKIGYGK----------------ANPTTRLWVGGLGP-NTSLAALARE 110 Query: 579 FQPYGKIANIRIRK--NFAFVQYEMQEDASVAVNKTDKSTI--LDRVVTVEYAFRDDDNE 746 F +G I I K +FA++QYE + A A K + DR + V++A ++ Sbjct: 111 FDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRY 170 Query: 747 RDDRHGSP 770 SP Sbjct: 171 PQQYQPSP 178
>Q8NDT2:RB15B_HUMAN Putative RNA-binding protein 15B - Homo sapiens (Human)| Length = 563 Score = 51.2 bits (121), Expect = 1e-05 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 11/188 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK-------SGYAFVYFQDERDAEDAIRR 398 R +F GN D+ + +L R F KYG I + IK YAF+ FQ+ A A Sbjct: 10 RNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVA 69 Query: 399 LSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERH 578 +S G R + + + + A PT L+V P T + + R Sbjct: 70 MSGRVIG--RNPIKIGYGK----------------ANPTTRLWVGGLGP-NTSLAALARE 110 Query: 579 FQPYGKIANIRIRK--NFAFVQYEMQEDASVAVNKTDKSTI--LDRVVTVEYAFRDDDNE 746 F +G I I K +FA++QYE + A A K + DR + V++A ++ Sbjct: 111 FDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRY 170 Query: 747 RDDRHGSP 770 SP Sbjct: 171 PQQYQPSP 178
>P04147:PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear -| Saccharomyces cerevisiae (Baker's yeast) Length = 577 Score = 51.2 bits (121), Expect = 1e-05 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 20/184 (10%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERDAEDAIRRLS 404 ++ N + ET + LF+K+GPI ++ G+ FV ++ DA A+ L+ Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTR----TLFVINFDPVRTKVVD-- 566 ++E + + + E + K + LFV N D V D Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD---SVDDEK 337 Query: 567 IERHFQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +E F PYG I + ++ K F FV + E+A+ A+ + ++ + + + V A Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397 Query: 726 FRDD 737 R D Sbjct: 398 QRKD 401 Score = 38.9 bits (89), Expect = 0.052 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 14/164 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERDAEDAIRRLS 404 +F N + L FS +G I I + G+ FV+F++E A++AI L+ Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 ++ SR+E RD L+V N + T + F Sbjct: 188 GMLLNGQEIYVAPHLSRKE------RDSQLEETKAHYTNLYVKNINSETTDE-QFQELFA 240 Query: 585 PYGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTI 695 +G I + + K+ F FV YE EDA AV + S + Sbjct: 241 KFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284 Score = 35.4 bits (80), Expect = 0.58 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 20/176 (11%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYF 362 G ES+ + ++ G+ + ++ L +FS G + I + GYA+V F Sbjct: 27 GSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 86 Query: 363 QDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFD 542 D AI +L+ R + WS+++ + K K + +F+ N Sbjct: 87 NDHEAGRKAIEQLNYTPI--KGRLCRIMWSQRDPSLRK----------KGSGNIFIKNLH 134 Query: 543 PVRTKVVDIERH-----FQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVN 674 P DI+ F +G I + +I K F FV +E + A A++ Sbjct: 135 P------DIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 184
>P13383:NUCL_RAT Nucleolin - Rattus norvegicus (Rat)| Length = 713 Score = 51.2 bits (121), Expect = 1e-05 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 9/220 (4%) Frame = +3 Query: 210 WESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG----PIRRIDIKSGYAFVYFQDERD 377 W E K L + N Y + L+ +F K P GYAF+ F D Sbjct: 484 WSGESKTLVL-----SNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFED 538 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTK 557 A++A+ + E RL ++ R A ++P++TLFV T+ Sbjct: 539 AKEALNSCNKMEIEGRTIRLELQGPRGSP----------NARSQPSKTLFVKGLSEDTTE 588 Query: 558 VVDIERHFQPYGKIANIRIR-----KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ F+ + + R K F FV + +EDA A + I VT+++ Sbjct: 589 ET-LKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 647 Query: 723 AFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A + R G R G G R G +G RGG Sbjct: 648 AKPKGEGGFGGR-GGGRGGFGGRGGGRGGRGGFGGRGRGG 686 Score = 40.4 bits (93), Expect = 0.018 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 15/175 (8%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI---KSGYAFVYFQDERDAEDAIRRLSNA 410 R + N + + +L+ +F IR + G A++ F+ E DAE + A Sbjct: 397 RTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGA 456 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAK---PTRTLFVINFDPVRT--------- 554 E R +S+ ++ ++ R TG ++ ++TL + N T Sbjct: 457 EI--DGRSVSLYYTGEKG----QRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 510 Query: 555 KVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 K I+ P+GK K +AF+++ EDA A+N +K I R + +E Sbjct: 511 KATFIKVPQNPHGK------SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 559
>Q96T58:MINT_HUMAN Msx2-interacting protein - Homo sapiens (Human)| Length = 3664 Score = 51.2 bits (121), Expect = 1e-05 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 9/174 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLS 404 R +F GN + T DL +F ++G I IDIK YAF+ + D AI+++ Sbjct: 438 RTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMD 497 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD--IERH 578 G++R +L + PT +++ D + + V D + RH Sbjct: 498 GEYLGNNRLKLGF------------------GKSMPTNCVWL---DGLSSNVSDQYLTRH 536 Query: 579 FQPYGKIANIRI--RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD 734 F YG + + K A V Y E A AV +T I + V++A R+ Sbjct: 537 FCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRE 590
>Q8CGC6:RBM28_MOUSE RNA-binding protein 28 - Mus musculus (Mouse)| Length = 750 Score = 50.8 bits (120), Expect = 1e-05 Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 24/221 (10%) Frame = +3 Query: 228 GLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAE 383 GLT+ F G R LE LFS+ GP+++ + + G+ +V F D + Sbjct: 3 GLTL---FVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQ 59 Query: 384 DAIRRLSNAE-------FGHSRRRLSVEWSRQEEPV--PKNRDRPTGADAKPTRTLFVIN 536 A++ ++ E + R + +R+ E PK + A + +I Sbjct: 60 RALKEITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIR 119 Query: 537 FDPVRTKVVDIERHFQPYGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTI 695 + D++ F YG + + I K FAFVQ++ +A A+ + I Sbjct: 120 NLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEI 179 Query: 696 LDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDR 818 R V V++A D + +P + P+ G + Sbjct: 180 KGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKK 220
>P09405:NUCL_MOUSE Nucleolin - Mus musculus (Mouse)| Length = 707 Score = 50.8 bits (120), Expect = 1e-05 Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 9/245 (3%) Frame = +3 Query: 135 RSILHRLAGDSERRRDLI*PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYG 314 RS+ G+ +R++ G W E K L + N Y + LE +F K Sbjct: 459 RSVSLYYTGEKGQRQERT--GKTSTWSGESKTLVL-----SNLSYSATKETLEEVFEKAT 511 Query: 315 ----PIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNR 482 P GYAF+ F DA++A+ + E RL ++ S Sbjct: 512 FIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSR------- 564 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIR-----KNFAFVQYEM 647 ++P++TLFV T+ ++ F+ + + R K F FV + Sbjct: 565 -------SQPSKTLFVKGLSEDTTEET-LKESFEGSVRARIVTDRETGSSKGFGFVDFNS 616 Query: 648 QEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +EDA A + I VT+++A + R G R G G R G +G Sbjct: 617 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR-GGGRGGFGGRGGGRGGRGGFGG 675 Query: 828 PRRGG 842 RGG Sbjct: 676 RGRGG 680 Score = 43.9 bits (102), Expect = 0.002 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI--DIKS-GYAFVYFQDERDAEDAIRRLSNA 410 R + N + + +L+ +F IR + D KS G A++ F+ E DAE + A Sbjct: 395 RTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 454 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ-- 584 E R +S+ ++ E+ + R T + ++TL + N TK +E F+ Sbjct: 455 EI--DGRSVSLYYTG-EKGQRQERTGKTSTWSGESKTLVLSNLSYSATKET-LEEVFEKA 510 Query: 585 --------PYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 P+GK K +AF+++ EDA A+N +K I R + +E Sbjct: 511 TFIKVPQNPHGK------PKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 557
>O77768:HNRPC_RABIT Heterogeneous nuclear ribonucleoprotein C - Oryctolagus cuniculus| (Rabbit) Length = 306 Score = 50.4 bits (119), Expect = 2e-05 Identities = 31/102 (30%), Positives = 45/102 (44%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKI + K FAFVQY + +A AV D I Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +V+ + A P+ R + G R + YGS Sbjct: 78 QVLDINLA------------AEPKVNRGKAGVKRSAAEMYGS 107 Score = 42.4 bits (98), Expect = 0.005 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + ++SD+E +FSKYG I + G+AFV + +ER+A A+ Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAV 67
>Q5RA82:HNRPC_PONPY Heterogeneous nuclear ribonucleoproteins C - Pongo pygmaeus| (Orangutan) Length = 306 Score = 50.4 bits (119), Expect = 2e-05 Identities = 31/102 (30%), Positives = 45/102 (44%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKI + K FAFVQY + +A AV D I Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +V+ + A P+ R + G R + YGS Sbjct: 78 QVLDINLA------------AEPKVNRGKAGVKRSAAEMYGS 107 Score = 42.4 bits (98), Expect = 0.005 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + ++SD+E +FSKYG I + G+AFV + +ER+A A+ Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAV 67
>Q9Z204:HNRPC_MOUSE Heterogeneous nuclear ribonucleoproteins C1/C2 - Mus musculus| (Mouse) Length = 313 Score = 50.4 bits (119), Expect = 2e-05 Identities = 31/102 (30%), Positives = 45/102 (44%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKI + K FAFVQY + +A AV D I Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +V+ + A P+ R + G R + YGS Sbjct: 78 QVLDINLA------------AEPKVNRGKAGVKRSAAEMYGS 107 Score = 42.4 bits (98), Expect = 0.005 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + ++SD+E +FSKYG I + G+AFV + +ER+A A+ Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAV 67
>P07910:HNRPC_HUMAN Heterogeneous nuclear ribonucleoproteins C1/C2 - Homo sapiens| (Human) Length = 306 Score = 50.4 bits (119), Expect = 2e-05 Identities = 31/102 (30%), Positives = 45/102 (44%) Frame = +3 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILD 701 +F+ N + + K D+E F YGKI + K FAFVQY + +A AV D I Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77 Query: 702 RVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGS 827 +V+ + A P+ R + G R + YGS Sbjct: 78 QVLDINLA------------AEPKVNRGKAGVKRSAAEMYGS 107 Score = 42.4 bits (98), Expect = 0.005 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 VF GN + ++SD+E +FSKYG I + G+AFV + +ER+A A+ Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAV 67
>Q8WP23:BOLL_MACFA Protein boule-like - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 283 Score = 50.4 bits (119), Expect = 2e-05 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIR-------RIDIKSGYAFVYFQDERDAEDAIRRLS 404 +F G D++T +SDL + FS+YG ++ R + GY FV F+ + DA+ ++ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRP 491 + + + +Q+ +P++ P Sbjct: 95 KLNYKDKKLNIGPAIRKQQVGIPRSSIMP 123
>Q8N9W6:BOLL_HUMAN Protein boule-like - Homo sapiens (Human)| Length = 283 Score = 50.4 bits (119), Expect = 2e-05 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIR-------RIDIKSGYAFVYFQDERDAEDAIRRLS 404 +F G D++T +SDL + FS+YG ++ R + GY FV F+ + DA+ ++ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRP 491 + + + +Q+ +P++ P Sbjct: 95 KLNYKDKKLNIGPAIRKQQVGIPRSSIMP 123
>Q5RDA3:CSTF2_PONPY Cleavage stimulation factor 64 kDa subunit - Pongo pygmaeus| (Orangutan) Length = 577 Score = 50.1 bits (118), Expect = 2e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ GP+ R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA 500 +R L+ EF S R L V+ + E+ + + TGA Sbjct: 74 MRNLNGREF--SGRALRVDNAASEKNKEELKSLGTGA 108
>Q8BIQ5:CSTF2_MOUSE Cleavage stimulation factor 64 kDa subunit - Mus musculus (Mouse)| Length = 580 Score = 50.1 bits (118), Expect = 2e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ GP+ R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA 500 +R L+ EF S R L V+ + E+ + + TGA Sbjct: 74 MRNLNGREF--SGRALRVDNAASEKNKEELKSLGTGA 108
>P33240:CSTF2_HUMAN Cleavage stimulation factor 64 kDa subunit - Homo sapiens (Human)| Length = 577 Score = 50.1 bits (118), Expect = 2e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ GP+ R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA 500 +R L+ EF S R L V+ + E+ + + TGA Sbjct: 74 MRNLNGREF--SGRALRVDNAASEKNKEELKSLGTGA 108
>Q8HXM1:CSTF2_BOVIN Cleavage stimulation factor 64 kDa subunit - Bos taurus (Bovine)| Length = 572 Score = 50.1 bits (118), Expect = 2e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ GP+ R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA 500 +R L+ EF S R L V+ + E+ + + TGA Sbjct: 74 MRNLNGREF--SGRALRVDNAASEKNKEELKSLGTGA 108
>Q62376:RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa - Mus musculus (Mouse)| Length = 448 Score = 49.7 bits (117), Expect = 3e-05 Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Frame = +3 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRP---TGADAKPTRTLFV 530 F+D RDA R + E +RR +E +QE P A +TLFV Sbjct: 48 FEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFV 107 Query: 531 --INFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKT 680 +N+D +K + R F+ YG I I + + +AF++YE + D A Sbjct: 108 ARVNYDTTESK---LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 681 DKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGG 812 D I R V V D + R + PR+ G RRGG Sbjct: 165 DGKKIDGRRVLV-----DVERGRTVKGWRPRRLGGGLGGTRRGG 203 Score = 46.2 bits (108), Expect = 3e-04 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQD 368 + +G + +F +Y+T +S L R F YGPI+RI + GYAF+ ++ Sbjct: 94 DPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153 Query: 369 ERDAEDAIRRLSNAEFGHSRRRLSVEWSR 455 ERD A + + R + VE R Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>P08621:RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa - Homo sapiens (Human)| Length = 437 Score = 49.7 bits (117), Expect = 3e-05 Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Frame = +3 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRP---TGADAKPTRTLFV 530 F+D RDA R + E +RR +E +QE P A +TLFV Sbjct: 48 FEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFV 107 Query: 531 --INFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKT 680 +N+D +K + R F+ YG I I + + +AF++YE + D A Sbjct: 108 ARVNYDTTESK---LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 681 DKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGG 812 D I R V V D + R + PR+ G RRGG Sbjct: 165 DGKKIDGRRVLV-----DVERGRTVKGWRPRRLGGGLGGTRRGG 203 Score = 46.2 bits (108), Expect = 3e-04 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQD 368 + +G + +F +Y+T +S L R F YGPI+RI + GYAF+ ++ Sbjct: 94 DPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153 Query: 369 ERDAEDAIRRLSNAEFGHSRRRLSVEWSR 455 ERD A + + R + VE R Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>Q1RMR2:RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa - Bos taurus (Bovine)| Length = 439 Score = 49.7 bits (117), Expect = 3e-05 Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 13/164 (7%) Frame = +3 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRP---TGADAKPTRTLFV 530 F+D RDA R + E +RR +E +QE P A +TLFV Sbjct: 48 FEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFV 107 Query: 531 --INFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKT 680 +N+D +K + R F+ YG I I + + +AF++YE + D A Sbjct: 108 ARVNYDTTESK---LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 681 DKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGG 812 D I R V V D + R + PR+ G RRGG Sbjct: 165 DGKKIDGRRVLV-----DVERGRTVKGWRPRRLGGGLGGTRRGG 203 Score = 46.2 bits (108), Expect = 3e-04 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQD 368 + +G + +F +Y+T +S L R F YGPI+RI + GYAF+ ++ Sbjct: 94 DPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153 Query: 369 ERDAEDAIRRLSNAEFGHSRRRLSVEWSR 455 ERD A + + R + VE R Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>O14102:SAP49_SCHPO Spliceosome-associated protein 49 - Schizosaccharomyces pombe| (Fission yeast) Length = 335 Score = 49.3 bits (116), Expect = 4e-05 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 18/191 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK--------SGYAFVYFQDERDAEDAIRRL 401 ++ GN D + S L L + GP+ I I +G+ F F E+D E A + L Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 402 SNAE-FGHSRRRLSVEWSRQEEPVPKNR-DRPTGADAKPTRTLFVINFDPVRTKVVDIER 575 + + FG +P+ NR + G + LFV N DP+ + V + Sbjct: 73 NQVKLFG--------------KPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDT 118 Query: 576 HFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR 731 F G++ K + FV Y+ E A A+ + ++++ +TV YAF+ Sbjct: 119 -FSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFK 177 Query: 732 DDDNERDDRHG 764 + + +RHG Sbjct: 178 REG--KGERHG 186
>Q42404:RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa - Arabidopsis thaliana| (Mouse-ear cress) Length = 427 Score = 48.9 bits (115), Expect = 5e-05 Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 10/213 (4%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIR 395 + +F +YE+ +S ++R F YGPI+R+ + GYAF+ + RD + A + Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197 Query: 396 RLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIER 575 + + R + VE R VP R R G +R +I Sbjct: 198 QADGQKIDGRRVLVDVERGR---TVPNWRPRRLGGGLGTSRV----------GGGEEIVG 244 Query: 576 HFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDD 755 QP G+ + E +E + + ++S L E R D R+D Sbjct: 245 EQQPQGRTSQSEEPSR----PREEREKSREKGKERERSRELSHEQPRE---RSRDRPRED 297 Query: 756 RHGSPRQ--GRDRYGSPRRGGDRYGSPRRGGDR 848 +H R GRDR RR DR R GDR Sbjct: 298 KHHRDRDQGGRDRDRDSRRDRDR---TRDRGDR 327 Score = 38.5 bits (88), Expect = 0.068 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Frame = +3 Query: 471 PKNRDRPTGADAKPTRTLFV--INFDPVRTKVVDIERHFQPYGKIANIRI--------RK 620 P N TG P +TLFV +N++ +K I+R F+ YG I + + K Sbjct: 126 PNNDPNATG---DPYKTLFVSRLNYESSESK---IKREFESYGPIKRVHLVTDQLTNKPK 179 Query: 621 NFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSP 800 +AF++Y D A + D I R V V D + R + PR+ G+ Sbjct: 180 GYAFIEYMHTRDMKAAYKQADGQKIDGRRVLV-----DVERGRTVPNWRPRRLGGGLGTS 234 Query: 801 RRGG 812 R GG Sbjct: 235 RVGG 238
>Q8SX83:SPEN_DROME Protein split ends - Drosophila melanogaster (Fruit fly)| Length = 5560 Score = 48.5 bits (114), Expect = 7e-05 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 7/186 (3%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK----SGYAFVYFQDERDAEDAIRRLSN 407 R +F GN + + +L F +G I IDIK + YAF + D A+R++ Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDG 715 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 G +R +L S +P N G D K + + ++ F Sbjct: 716 EHLGSNRIKLGFGKS-----MPTNCVWIDGVDEKVSESF--------------LQSQFTR 756 Query: 588 YGKIANIRIRKN--FAFVQYEMQEDASVAVNKTDKSTILDR-VVTVEYAFRDDDNERDDR 758 +G + + I +N A V Y+ ++A AV K + TIL R + V++A R+ + D+ Sbjct: 757 FGAVTKVSIDRNRQLALVLYDQVQNAQAAV-KDMRGTILRRKKLQVDFASRECQDAFYDK 815 Query: 759 HGSPRQ 776 +Q Sbjct: 816 QEKQQQ 821
>Q09442:SF3B4_CAEEL Splicing factor 3B subunit 4 - Caenorhabditis elegans| Length = 388 Score = 48.5 bits (114), Expect = 7e-05 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 17/191 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ G D + +S L L + GP+ +++ G+ FV F E DA+ AI+ L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 + + +P+ N+ + +FV N DP + + + F Sbjct: 75 NMIKL-------------YGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDT-F 120 Query: 582 QPYGKIANIR---------IRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD 734 +G I + K FAF+ + E + A+ + + +R +TV YAF+ Sbjct: 121 SAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180 Query: 735 DDNERDDRHGS 767 D + +RHG+ Sbjct: 181 D--SKGERHGT 189
>Q9Y4C8:RBM19_HUMAN Probable RNA-binding protein 19 - Homo sapiens (Human)| Length = 960 Score = 48.5 bits (114), Expect = 7e-05 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 23/194 (11%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----------GYAFVY 359 E E + L +F N +++T + L+ +FSK G ++ I G+ FV Sbjct: 721 EEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVE 780 Query: 360 FQDERDAEDAIRRLSNAEFGH--SRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVI 533 ++ A+ A+++L GH +L V S + R K T + ++ Sbjct: 781 YRKPEQAQKALKQLQ----GHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836 Query: 534 NFDPVRTKVVDIERHFQPYGKIANIRIRKN---------FAFVQYEMQEDASVAVNKTDK 686 P + +I F +G++ +R+ K F FV + ++DA A N Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCH 896 Query: 687 ST-ILDRVVTVEYA 725 ST + R + +E+A Sbjct: 897 STHLYGRRLVLEWA 910 Score = 37.7 bits (86), Expect = 0.12 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Frame = +3 Query: 150 RLAGDSERRRDLI*PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRI 329 R+ G++E DL G L F N Y + + DLE+LFSKYGP+ + Sbjct: 387 RILGENEEEEDLAESGRL---------------FVRNLPYTSTEEDLEKLFSKYGPLSEL 431 Query: 330 DI--------KSGYAFVYFQDERDAEDAIRRLSNAEF 416 G+AF+ F A A + F Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVF 468 Score = 35.8 bits (81), Expect = 0.44 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 24/151 (15%) Frame = +3 Query: 336 KSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA----- 500 K+GY FV F +E + + A++ N E+ R +E R E+ VP + P Sbjct: 332 KTGYIFVDFSNEEEVKQALK--CNREYMGGR---YIEVFR-EKNVPTTKGAPKNTTKSWQ 385 Query: 501 -----------DAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANI--------RIRKN 623 D + LFV N P + D+E+ F YG ++ + + K Sbjct: 386 GRILGENEEEEDLAESGRLFVRNL-PYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKG 444 Query: 624 FAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 FAF+ + E A A ++ D R++ V Sbjct: 445 FAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475
>Q924M5:BOLL_MOUSE Protein boule-like - Mus musculus (Mouse)| Length = 281 Score = 48.5 bits (114), Expect = 7e-05 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 +F G D++T ++DL + FS+YG ++ + I GY F+ F+ + DA+ ++ Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRP 491 + + + +Q+ +P++ P Sbjct: 95 KLNYKDKKLNIGPAIRKQQVGIPRSSLMP 123
>Q09511:RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 - Caenorhabditis| elegans Length = 196 Score = 48.1 bits (113), Expect = 9e-05 Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 14/140 (10%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQ 638 DR D +L + N +T D+ R F+ YG I ++ I K F FV+ Sbjct: 8 DRRAAPDINGLTSLKIDNLS-YQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVR 66 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYAFRD-DDNERDDRHGSPRQGRDRYGSPRRGG- 812 + + DA A+++TD + R + V A D +ER R G GR R SPRR Sbjct: 67 FYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRGGG--GGRRRSRSPRRRSR 124 Query: 813 ----DRYGSPRRGGDRYGSP 860 R SPRR R SP Sbjct: 125 SPRYSRSRSPRRSRSRTRSP 144 Score = 42.4 bits (98), Expect = 0.005 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y+T +DL R F +YG I + I G+ FV F + RDAE A+ R Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 R L V ++ + P + R G + +R+ Sbjct: 85 V--DGRELRVTLAKYDRPSDERGGRGGGGGRRRSRS 118
>Q8R3C6:RBM19_MOUSE Probable RNA-binding protein 19 - Mus musculus (Mouse)| Length = 952 Score = 48.1 bits (113), Expect = 9e-05 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 23/194 (11%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----------GYAFVY 359 E E + + +F N ++ T + L+ +FSK G I+ I G+ FV Sbjct: 713 EEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 772 Query: 360 FQDERDAEDAIRRLSNAEFGHS--RRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVI 533 ++ A+ A+++L GH+ +L V S + R K T + ++ Sbjct: 773 YKKPEQAQKALKQLQ----GHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 828 Query: 534 NFDPVRTKVVDIERHFQPYGKIANIRIRKN---------FAFVQYEMQEDASVAVNKTDK 686 P + +I F +G++ +R+ K F FV + ++DA A N Sbjct: 829 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 888 Query: 687 ST-ILDRVVTVEYA 725 ST + R + +E+A Sbjct: 889 STHLYGRRLVLEWA 902 Score = 35.0 bits (79), Expect = 0.76 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Frame = +3 Query: 150 RLAGDSERRRDLI*PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRI 329 R G++E DL G L F N Y + + DLE+LFS YGP+ + Sbjct: 385 RTLGENEEEEDLADSGRL---------------FVRNLSYTSSEEDLEKLFSAYGPLSEL 429 Query: 330 DI--------KSGYAFVYFQDERDAEDAIRRLSNAEF 416 G+AFV F A A + F Sbjct: 430 HYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF 466
>Q9UKM9:RALY_HUMAN RNA-binding protein Raly - Homo sapiens (Human)| Length = 306 Score = 48.1 bits (113), Expect = 9e-05 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYE-TRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDA 389 +++ K + R VF GN + ++SD+E +FSKYG + + GYAFV + +ER A A Sbjct: 13 KNDPKSINSR-VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAA 71 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGAD--AKPTRTLFVINFDPVRTKVV 563 + E G +++ + EP P DRP G A + ++ ++D R Sbjct: 72 VL----GENGRVLAGQTLDINMAGEPKP---DRPKGLKRAASAIYSGYIFDYDYYRDDFY 124 Query: 564 DIERHFQPYGKIANIRI 614 D R F G+++ + + Sbjct: 125 D--RLFDYRGRLSPVPV 139 Score = 40.8 bits (94), Expect = 0.014 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +3 Query: 477 NRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQED 656 N++ P +++ +F+ N + K D+E F YG++A + K +AFVQY + Sbjct: 12 NKNDPKSINSR----VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERH 67 Query: 657 ASVAV 671 A AV Sbjct: 68 ARAAV 72
>Q01560:NOP3_YEAST Nucleolar protein 3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 414 Score = 48.1 bits (113), Expect = 9e-05 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 9/215 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 +F F + ++S+L +F +GP++ + I +G+AFV F++ A AI + F + Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF--A 184 Query: 426 RRRLSVEWSRQEEPVPKNRDR------PTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 + L V +S+ +P R R P G + + L N +E F Sbjct: 185 NQPLEVVYSK----LPAKRYRITMKNLPEGCSWQDLKDLAREN---------SLETTFSS 231 Query: 588 YGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN---ERDDR 758 N R +++ +E A+ + + V+TVE RDD+ R +R Sbjct: 232 ----VNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE---RDDNPPPIRRSNR 284 Query: 759 HGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPK 863 G +GR + RGG R G R G +G P+ Sbjct: 285 GGF--RGRGGFRGGFRGGFRGGFSRGG---FGGPR 314
>P78814:SRP2_SCHPO Pre-mRNA-splicing factor srp2 - Schizosaccharomyces pombe (Fission| yeast) Length = 365 Score = 47.8 bits (112), Expect = 1e-04 Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 7/207 (3%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHS 425 +F G + + D+ F YG I + +G+ FV +D RDA D + EF S Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGS 65 Query: 426 RRRLSVEWSRQEEPVPKN-RDRPTGADAKPTRTLFVINFDPVRTKV--VDIERHFQPYGK 596 R+ VE +R E +N R+ +P RT F + + + V D++ + G+ Sbjct: 66 --RIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGE 123 Query: 597 IANI---RIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGS 767 R V++ +ED A+ + I + VT+ D D + Sbjct: 124 PTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR---EDPDAANEPLPEV 180 Query: 768 PRQGRDRYGSPRRGGDRYGSP-RRGGD 845 P + R R RR RY RRGGD Sbjct: 181 PSRFRSRSPPARR---RYRDDYRRGGD 204
>Q66II8:RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 471 Score = 47.8 bits (112), Expect = 1e-04 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 13/164 (7%) Frame = +3 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQE-----EPVPKNRDRPTGADAKPTRTL 524 F+D RDA R + E +RR +E +Q+ + + D+ DA T + Sbjct: 48 FEDPRDAPPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFV 107 Query: 525 FVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAVNKT 680 +N+D +K + R F+ YG I I + N +AF++YE + D A Sbjct: 108 ARVNYDTTESK---LRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 681 DKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGG 812 D I R V V D + R + PR+ G RRGG Sbjct: 165 DGKKIDGRRVLV-----DVERGRTVKGWRPRRLGGGLGGTRRGG 203 Score = 47.8 bits (112), Expect = 1e-04 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Frame = +3 Query: 129 RRRSILHRLAGDSERRRDLI*PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSK 308 +RR + R D E + W + +G + +F +Y+T +S L R F Sbjct: 70 KRREKIERRQQDVENELKI----WDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 309 YGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSR 455 YGPI+RI + GYAF+ ++ ERD A + + R + VE R Sbjct: 126 YGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>P09406:RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa - Xenopus laevis (African| clawed frog) Length = 471 Score = 47.8 bits (112), Expect = 1e-04 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 16/167 (9%) Frame = +3 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQE-----EPVPKNRDRPTGADAKPTRTL 524 F+D RDA R + E +RR +E +Q+ + + D+ DA T + Sbjct: 48 FEDPRDAPPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFV 107 Query: 525 FVINFDPVRTKVVDIERHFQPYGKIANIRIRKN-----------FAFVQYEMQEDASVAV 671 +N+D +K + R F+ YG I I I N +AF++YE + D A Sbjct: 108 ARVNYDTTESK---LRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAY 164 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGG 812 D I R V V D + R + PR+ G RRGG Sbjct: 165 KHADGKKIDGRRVLV-----DVERGRTVKGWRPRRLGGGLGGTRRGG 206 Score = 47.8 bits (112), Expect = 1e-04 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 11/120 (9%) Frame = +3 Query: 129 RRRSILHRLAGDSERRRDLI*PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSK 308 +RR + R D E + W + +G + +F +Y+T +S L R F Sbjct: 70 KRREKIERRQQDVENELKI----WDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 Query: 309 YGPIRRIDI-----------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSR 455 YGPI+RI I GYAF+ ++ ERD A + + R + VE R Sbjct: 126 YGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 185
>Q96T37:RBM15_HUMAN Putative RNA-binding protein 15 - Homo sapiens (Human)| Length = 977 Score = 47.8 bits (112), Expect = 1e-04 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 9/152 (5%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK-------SGYAFVYFQDERDAEDAIRR 398 R +F GN D +SDL R F ++G I +DIK S Y F+ F+ Sbjct: 374 RTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFE----------- 422 Query: 399 LSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERH 578 N + H R +L++ + + +N + A PT L+V P + + R Sbjct: 423 --NLDMSH-RAKLAM----SGKIIIRNPIKIGYGKATPTTRLWVGGLGP-WVPLAALARE 474 Query: 579 FQPYGKIANIRIRK--NFAFVQYEMQEDASVA 668 F +G I I RK ++A++QYE + A A Sbjct: 475 FDRFGTIRTIDYRKGDSWAYIQYESLDAAHAA 506
>P29341:PABP1_MOUSE Polyadenylate-binding protein 1 - Mus musculus (Mouse)| Length = 636 Score = 47.8 bits (112), Expect = 1e-04 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI ++ N Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM-N 159 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 + R+ + Q+E R+ GA AK +++ NF + +D ER + Sbjct: 160 GMLLNDRKVFVGRFKSQKE-----REAELGARAKEFTNVYIKNFG----EDMDDERLKEL 210 Query: 588 YGKIA---NIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDD 737 +GK ++++ K F FV +E EDA AV++ + + + + V A + Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270 Query: 738 DNERDDRHGSPRQGRDR 788 + + + + + +DR Sbjct: 271 ERQTELKRKFEQMKQDR 287 Score = 43.9 bits (102), Expect = 0.002 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>Q99181:HSH49_YEAST Protein HSH49 - Saccharomyces cerevisiae (Baker's yeast)| Length = 213 Score = 47.4 bits (111), Expect = 1e-04 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 20/184 (10%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 V+ GN D + L LF + P+ RI GYAF+ F ++ DA+ AI+ + Sbjct: 11 VYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIM 70 Query: 402 SNAEFGHSR--RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF-DPVRTKVVDIE 572 +N + R + V S +P N + P LF+ N D + + + Sbjct: 71 NNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDM---ILPIAKLFIKNLADSIDSD--QLV 125 Query: 573 RHFQPYGKIANIRIRKNF---------AFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 + F +GK+ IR + F A+V +E E A +A+ + + + +TV+YA Sbjct: 126 KIFNKFGKL--IREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYA 183 Query: 726 FRDD 737 F+++ Sbjct: 184 FKEN 187
>O64380:PABP3_ARATH Polyadenylate-binding protein 3 - Arabidopsis thaliana (Mouse-ear| cress) Length = 660 Score = 47.0 bits (110), Expect = 2e-04 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 14/190 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 ++ G+ D + ++ L LF + + + GYA++ F + DA A+ L+ Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 R+ + NRD T K +F+ N D E F Sbjct: 111 YTPLFDRPIRIMLS----------NRDPSTRLSGKGN--IFIKNLDASIDNKALFET-FS 157 Query: 585 PYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 +G I + ++ K + FVQ+E +E A A++K + + D+ V V + R + Sbjct: 158 SFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217 Query: 744 ERDDRHGSPR 773 RD+ +PR Sbjct: 218 ARDENTPTPR 227
>Q9EPH8:PABP1_RAT Polyadenylate-binding protein 1 - Rattus norvegicus (Rat)| Length = 636 Score = 47.0 bits (110), Expect = 2e-04 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 16/197 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQP 587 + + SR+E R+ GA AK +++ NF + +D ER + Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFG----EDMDDERLKEL 210 Query: 588 YGKIA---NIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDD 737 +GK ++++ K F FV +E EDA AV++ + + + + V A + Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270 Query: 738 DNERDDRHGSPRQGRDR 788 + + + + + +DR Sbjct: 271 ERQTELKRKFEQMKQDR 287 Score = 43.9 bits (102), Expect = 0.002 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>Q5R8F7:PABP1_PONPY Polyadenylate-binding protein 1 - Pongo pygmaeus (Orangutan)| Length = 636 Score = 47.0 bits (110), Expect = 2e-04 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF--DPVRTKVVDIERHF 581 + + SR+E R+ GA AK +++ NF D ++ D+ F Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFGEDMDDERLKDL---F 211 Query: 582 QPYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 +G ++++ K F FV +E EDA AV++ + + + + V A + + Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271 Query: 741 NERDDRHGSPRQGRDR 788 + + + + +DR Sbjct: 272 RQTELKRKFEQMKQDR 287 Score = 43.9 bits (102), Expect = 0.002 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>P11940:PABP1_HUMAN Polyadenylate-binding protein 1 - Homo sapiens (Human)| Length = 636 Score = 47.0 bits (110), Expect = 2e-04 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF--DPVRTKVVDIERHF 581 + + SR+E R+ GA AK +++ NF D ++ D+ F Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFGEDMDDERLKDL---F 211 Query: 582 QPYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 +G ++++ K F FV +E EDA AV++ + + + + V A + + Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271 Query: 741 NERDDRHGSPRQGRDR 788 + + + + +DR Sbjct: 272 RQTELKRKFEQMKQDR 287 Score = 43.9 bits (102), Expect = 0.002 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>P61286:PABP1_BOVIN Polyadenylate-binding protein 1 - Bos taurus (Bovine)| Length = 636 Score = 47.0 bits (110), Expect = 2e-04 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF--DPVRTKVVDIERHF 581 + + SR+E R+ GA AK +++ NF D ++ D+ F Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFGEDMDDERLKDL---F 211 Query: 582 QPYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 +G ++++ K F FV +E EDA AV++ + + + + V A + + Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271 Query: 741 NERDDRHGSPRQGRDR 788 + + + + +DR Sbjct: 272 RQTELKRKFEQMKQDR 287 Score = 43.9 bits (102), Expect = 0.002 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A+ K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>P17133:RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa - Drosophila melanogaster| (Fruit fly) Length = 448 Score = 46.6 bits (109), Expect = 3e-04 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 42/168 (25%) Frame = +3 Query: 498 ADAKPTRTLFV--INFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEM 647 A P RTLF+ IN+D +K + R F+ YG I I + K +AF++YE Sbjct: 96 ATEDPFRTLFIARINYDTSESK---LRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEH 152 Query: 648 QEDASVAVNKTD------KSTILD--------------------------RVVTVEYAFR 731 + D A D K ++D V ++++ R Sbjct: 153 ERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGR 212 Query: 732 DDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQ 875 +D+ +R+ R+ DR G P RGG G R G +G+ +R ++ Sbjct: 213 EDNERERERYRLEREREDREG-PGRGGGSNGLDARPGRGFGAERRRSR 259 Score = 45.1 bits (105), Expect = 7e-04 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIR 395 R +F +Y+T +S L R F YGPI++I + GYAF+ ++ ERD A + Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYK 161 Query: 396 RLSNAEFGHSRRRLSVEWSR 455 + R + VE +R Sbjct: 162 HADGKKIDSKRVLVDVERAR 181
>Q18409:RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 - Caenorhabditis| elegans Length = 179 Score = 46.6 bits (109), Expect = 3e-04 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS---GYAFVYFQDERDAEDAIRRLSNAEF 416 V+ G + +LE +F ++G IR++ + G+AFV + D RDAEDA+R L + Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64 Query: 417 GHSRRRLSV 443 R R+ + Sbjct: 65 CGVRARVEL 73 Score = 36.2 bits (82), Expect = 0.34 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Frame = +3 Query: 564 DIERHFQPYGKIANIRIRKN---FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD 734 ++E F +G+I + + + FAFV+Y+ DA AV D S I VE + Sbjct: 18 ELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS--- 74 Query: 735 DDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 G+ R G R GG +G R GG R SP R ++G Sbjct: 75 -------------TGQRRGGGGRGGG--FGG-RGGGGRDRSPYRGDRG 106
>Q6IP09:PABPB_XENLA Polyadenylate-binding protein 1-B - Xenopus laevis (African clawed| frog) Length = 633 Score = 46.6 bits (109), Expect = 3e-04 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 16/197 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIER---H 578 + + SR+E R+ GA AK +++ NF + +D ER Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFG----EDMDDERLKEW 210 Query: 579 FQPYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDD 737 F YG ++++ + F FV +E EDA AV+ + + + + V A + Sbjct: 211 FGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270 Query: 738 DNERDDRHGSPRQGRDR 788 + + + + + +DR Sbjct: 271 ERQTELKRKFEQMKQDR 287 Score = 44.3 bits (103), Expect = 0.001 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + + + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A++K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>P20965:PABPA_XENLA Polyadenylate-binding protein 1-A - Xenopus laevis (African clawed| frog) Length = 633 Score = 46.6 bits (109), Expect = 3e-04 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 14/195 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L FS +G I + GY FV+F+ + AE AI +++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF-DPVRTKVVDIERHFQ 584 + + SR+E R+ GA AK +++ NF D + + ++ F Sbjct: 161 MLLNDRKVFVGRFKSRKE------REAELGARAKEFTNVYIKNFGDDMNDE--RLKEMFG 212 Query: 585 PYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 YG ++++ K F FV +E EDA AV++ + + + + V A + + Sbjct: 213 KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272 Query: 744 ERDDRHGSPRQGRDR 788 + + + + +DR Sbjct: 273 QTELKRKFEQMKQDR 287 Score = 46.2 bits (108), Expect = 3e-04 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 18/178 (10%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + ++ L FS GPI I + GYA+V FQ DAE Sbjct: 10 MASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66 Query: 393 RRLSNAEFGHSR-RRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F + R + + WS+++ P R G +F+ N D K +D Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRD---PSLRKSGVG-------NIFIKNLD----KSIDN 112 Query: 567 --IERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 + F +G I + ++ K + FV +E QE A A++K + + DR V V Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>P62997:TRA2B_RAT Splicing factor, arginine/serine-rich 10 - Rattus norvegicus (Rat)| Length = 288 Score = 46.2 bits (108), Expect = 3e-04 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FSKYGPI + I G+AFVYF++ DA++A R + E Sbjct: 129 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DG 186 Query: 429 RRLSVEWSRQEEP 467 RR+ V++S + P Sbjct: 187 RRIRVDFSITKRP 199 Score = 35.0 bits (79), Expect = 0.76 Identities = 51/199 (25%), Positives = 73/199 (36%), Gaps = 26/199 (13%) Frame = +3 Query: 357 YFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVIN 536 ++ R + RR + + RR S P+ R R G A P + Sbjct: 67 HYTRSRSRSRSHRRSRSRSYSRDYRR---RHSHSHSPMSTRR-RHVGNRANPDPNCCLGV 122 Query: 537 FD-PVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKS 689 F + T D+ F YG IA++ I + FAFV +E +DA A + + Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182 Query: 690 TILDRVVTVEYAFRDDDNERDDRHGSPR----QGRDRYGSPR------RGGDR------- 818 + R + V+++ R +P GR YGS R RG DR Sbjct: 183 ELDGRRIRVDFSI-------TKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235 Query: 819 YGSPRRGGDRYGSPKRANQ 875 Y RGG G RA Q Sbjct: 236 YSRSYRGGGGGGGGWRAAQ 254
>P62996:TRA2B_MOUSE Splicing factor, arginine/serine-rich 10 - Mus musculus (Mouse)| Length = 288 Score = 46.2 bits (108), Expect = 3e-04 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FSKYGPI + I G+AFVYF++ DA++A R + E Sbjct: 129 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DG 186 Query: 429 RRLSVEWSRQEEP 467 RR+ V++S + P Sbjct: 187 RRIRVDFSITKRP 199 Score = 35.0 bits (79), Expect = 0.76 Identities = 51/199 (25%), Positives = 73/199 (36%), Gaps = 26/199 (13%) Frame = +3 Query: 357 YFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVIN 536 ++ R + RR + + RR S P+ R R G A P + Sbjct: 67 HYTRSRSRSRSHRRSRSRSYSRDYRR---RHSHSHSPMSTRR-RHVGNRANPDPNCCLGV 122 Query: 537 FD-PVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKS 689 F + T D+ F YG IA++ I + FAFV +E +DA A + + Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182 Query: 690 TILDRVVTVEYAFRDDDNERDDRHGSPR----QGRDRYGSPR------RGGDR------- 818 + R + V+++ R +P GR YGS R RG DR Sbjct: 183 ELDGRRIRVDFSI-------TKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235 Query: 819 YGSPRRGGDRYGSPKRANQ 875 Y RGG G RA Q Sbjct: 236 YSRSYRGGGGGGGGWRAAQ 254
>P62995:TRA2B_HUMAN Splicing factor, arginine/serine-rich 10 - Homo sapiens (Human)| Length = 288 Score = 46.2 bits (108), Expect = 3e-04 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FSKYGPI + I G+AFVYF++ DA++A R + E Sbjct: 129 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DG 186 Query: 429 RRLSVEWSRQEEP 467 RR+ V++S + P Sbjct: 187 RRIRVDFSITKRP 199 Score = 35.0 bits (79), Expect = 0.76 Identities = 51/199 (25%), Positives = 73/199 (36%), Gaps = 26/199 (13%) Frame = +3 Query: 357 YFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVIN 536 ++ R + RR + + RR S P+ R R G A P + Sbjct: 67 HYTRSRSRSRSHRRSRSRSYSRDYRR---RHSHSHSPMSTRR-RHVGNRANPDPNCCLGV 122 Query: 537 FD-PVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKS 689 F + T D+ F YG IA++ I + FAFV +E +DA A + + Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182 Query: 690 TILDRVVTVEYAFRDDDNERDDRHGSPR----QGRDRYGSPR------RGGDR------- 818 + R + V+++ R +P GR YGS R RG DR Sbjct: 183 ELDGRRIRVDFSI-------TKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235 Query: 819 YGSPRRGGDRYGSPKRANQ 875 Y RGG G RA Q Sbjct: 236 YSRSYRGGGGGGGGWRAAQ 254
>Q3ZBT6:TRA2B_BOVIN Splicing factor, arginine/serine-rich 10 - Bos taurus (Bovine)| Length = 288 Score = 46.2 bits (108), Expect = 3e-04 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FSKYGPI + I G+AFVYF++ DA++A R + E Sbjct: 129 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DG 186 Query: 429 RRLSVEWSRQEEP 467 RR+ V++S + P Sbjct: 187 RRIRVDFSITKRP 199 Score = 35.0 bits (79), Expect = 0.76 Identities = 51/199 (25%), Positives = 73/199 (36%), Gaps = 26/199 (13%) Frame = +3 Query: 357 YFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVIN 536 ++ R + RR + + RR S P+ R R G A P + Sbjct: 67 HYTRSRSRSRSHRRSRSRSYSRDYRR---RHSHSHSPMSTRR-RHVGNRANPDPNCCLGV 122 Query: 537 FD-PVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKS 689 F + T D+ F YG IA++ I + FAFV +E +DA A + + Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182 Query: 690 TILDRVVTVEYAFRDDDNERDDRHGSPR----QGRDRYGSPR------RGGDR------- 818 + R + V+++ R +P GR YGS R RG DR Sbjct: 183 ELDGRRIRVDFSI-------TKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235 Query: 819 YGSPRRGGDRYGSPKRANQ 875 Y RGG G RA Q Sbjct: 236 YSRSYRGGGGGGGGWRAAQ 254
>Q15427:SF3B4_HUMAN Splicing factor 3B subunit 4 - Homo sapiens (Human)| Length = 424 Score = 45.8 bits (107), Expect = 4e-04 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 17/208 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRL 401 V+ G D + + L LF + GP+ R GY FV F E DA+ AI+ + Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 + +L + R + N++ GA+ +F+ N DP + + + F Sbjct: 75 NMI-------KLYGKPIRVNKASAHNKNLDVGAN------IFIGNLDPEIDEKLLYDT-F 120 Query: 582 QPYGKIA---------NIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD 734 +G I + K +AF+ + + + A+ + + +R +TV YAF+ Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180 Query: 735 DDNERDDRHGSPRQGRDRYGSPRRGGDR 818 D + +RHGS + +P DR Sbjct: 181 D--SKGERHGSAAERLLAAQNPLSQADR 206
>Q64012:RALY_MOUSE RNA-binding protein Raly - Mus musculus (Mouse)| Length = 312 Score = 45.8 bits (107), Expect = 4e-04 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYET-RQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDA 389 +++ K + R VF GN + ++SD+E +FSKYG + + GYAFV + +ER A A Sbjct: 13 KNDPKSINSR-VFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAA 71 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFD 542 + E G +++ + EP P +RP G T +FD Sbjct: 72 VL----GENGRVLAGQTLDINMAGEPKP---NRPKGLKRAATAIYSGYSFD 115 Score = 40.0 bits (92), Expect = 0.023 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +3 Query: 477 NRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQED 656 N++ P +++ +F+ N + K D+E F YG++A + K +AFVQY + Sbjct: 12 NKNDPKSINSR----VFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 67 Query: 657 ASVAV 671 A AV Sbjct: 68 ARAAV 72
>P21187:PABP_DROME Polyadenylate-binding protein - Drosophila melanogaster (Fruit fly)| Length = 634 Score = 45.8 bits (107), Expect = 4e-04 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 17/159 (10%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERDAEDAIRRLS 404 VF N D + FS +G I + + GY FV+F+ E A +I +++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIER--- 575 + + R+E R++ G AK ++V NF T+ D E+ Sbjct: 152 GMLLNGKKVYVGKFIPRKE------REKELGEKAKLFTNVYVKNF----TEDFDDEKLKE 201 Query: 576 HFQPYGKIANIRI-------RKNFAFVQYEMQEDASVAV 671 F+PYGKI + ++ K F FV +E E A AV Sbjct: 202 FFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV 240 Score = 43.5 bits (101), Expect = 0.002 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 M ++ G+ + +S L FS GP+ I + GYA+V FQ DAE Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAE--- 57 Query: 393 RRLSNAEFGHSRRR-LSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD- 566 R L F R + + + WS+++ P R G +F+ N D + +D Sbjct: 58 RALDTMNFDLVRNKPIRIMWSQRD---PSLRRSGVG-------NVFIKNLD----RAIDN 103 Query: 567 --IERHFQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTD 683 I F +G I + ++ K + FV +E +E A+ +++K + Sbjct: 104 KAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
>Q9R0U0:FUSIP_MOUSE FUS-interacting serine-arginine-rich protein 1 - Mus musculus| (Mouse) Length = 262 Score = 45.8 bits (107), Expect = 4e-04 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK--------SGYAFVYFQDERDAEDAIRRL 401 +F N +TR DL R F +YGPI + + G+A+V F+D RDAEDA+ L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTG 497 R++ +++++ + P G Sbjct: 72 DRKWI--CGRQIEIQFAQGDRKTPNQMKAKEG 101 Score = 45.4 bits (106), Expect = 6e-04 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Frame = +3 Query: 510 PTRTLFVINF-DPVRTKVVDIERHFQPYGKIANI--------RIRKNFAFVQYEMQEDAS 662 P +LFV N D R++ D+ R F YG I ++ R + FA+VQ+E DA Sbjct: 8 PNTSLFVRNVADDTRSE--DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 663 VAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A++ D+ I R + +++A D + ++GR+ Y S R D Y RR Sbjct: 66 DALHNLDRKWICGRQIEIQFAQGD---RKTPNQMKAKEGRNVYSSSRY--DDYDRYRRSR 120 Query: 843 DRYGSPKRA 869 R +R+ Sbjct: 121 SRSYERRRS 129
>O75494:FUSIP_HUMAN FUS-interacting serine-arginine-rich protein 1 - Homo sapiens| (Human) Length = 262 Score = 45.8 bits (107), Expect = 4e-04 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK--------SGYAFVYFQDERDAEDAIRRL 401 +F N +TR DL R F +YGPI + + G+A+V F+D RDAEDA+ L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTG 497 R++ +++++ + P G Sbjct: 72 DRKWI--CGRQIEIQFAQGDRKTPNQMKAKEG 101 Score = 45.4 bits (106), Expect = 6e-04 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Frame = +3 Query: 510 PTRTLFVINF-DPVRTKVVDIERHFQPYGKIANI--------RIRKNFAFVQYEMQEDAS 662 P +LFV N D R++ D+ R F YG I ++ R + FA+VQ+E DA Sbjct: 8 PNTSLFVRNVADDTRSE--DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 663 VAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 A++ D+ I R + +++A D + ++GR+ Y S R D Y RR Sbjct: 66 DALHNLDRKWICGRQIEIQFAQGD---RKTPNQMKAKEGRNVYSSSRY--DDYDRYRRSR 120 Query: 843 DRYGSPKRA 869 R +R+ Sbjct: 121 SRSYERRRS 129
>Q6PDU1:SFRS2_RAT Splicing factor, arginine/serine-rich 2 - Rattus norvegicus (Rat)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q06A98:SFRS2_PIG Splicing factor, arginine/serine-rich 2 - Sus scrofa (Pig)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q5R1W5:SFRS2_PANTR Splicing factor, arginine/serine-rich 2 - Pan troglodytes| (Chimpanzee) Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q62093:SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 - Mus musculus (Mouse)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q01130:SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 - Homo sapiens (Human)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>P30352:SFRS2_CHICK Splicing factor, arginine/serine-rich 2 - Gallus gallus (Chicken)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q3MHR5:SFRS2_BOVIN Splicing factor, arginine/serine-rich 2 - Bos taurus (Bovine)| Length = 221 Score = 45.4 bits (106), Expect = 6e-04 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N Y T L R+F KYG + + I G+AFV F D+RDAEDA+ + A Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 FGHSRRRLSVEWSRQEEPVPKNRDR 488 R L V+ +R P + R Sbjct: 80 L--DGRELRVQMARYGRPPDSHHSR 102
>Q9H361:PABP3_HUMAN Polyadenylate-binding protein 3 - Homo sapiens (Human)| Length = 631 Score = 45.4 bits (106), Expect = 6e-04 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRLSN 407 +F N D L S +G I ++ GY FV+F+ AE AI++++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF--DPVRTKVVDIERHF 581 + + SR+E R+ GA AK +++ NF D ++ D+ F Sbjct: 161 MLLNGRKVFVGQFKSRKE------REAELGARAKEFPNVYIKNFGEDMDDERLKDL---F 211 Query: 582 QPYGKIANIRIR-------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD 740 +G ++++ K F FV +E EDA AV++ + + + + V A + + Sbjct: 212 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271 Query: 741 NERDDRHGSPRQGRDR 788 + + + + +DR Sbjct: 272 RQTELKRTFEQMKQDR 287 Score = 35.8 bits (81), Expect = 0.44 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 ++ G+ + ++ L FS GPI I I S YA+V FQ +DAE A+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFD-PVRTKVVDIERH 578 + + + + WS+++ P R G +FV N D + K + Sbjct: 73 NFDVI--KGKPVRIMWSQRD---PSLRKSGVG-------NIFVKNLDKSINNKA--LYDT 118 Query: 579 FQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 +G I + + K + FV +E E A A+ K + + R V V Sbjct: 119 VSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>Q9NW13:RBM28_HUMAN RNA-binding protein 28 - Homo sapiens (Human)| Length = 759 Score = 45.1 bits (105), Expect = 7e-04 Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 24/194 (12%) Frame = +3 Query: 228 GLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAE 383 GLT+ F G R LE LFS+ GP+++ + + G+ +V F D + Sbjct: 3 GLTL---FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQ 59 Query: 384 DAIRRLSNAE---------FGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVIN 536 A++ ++ E R + + + PK + A + +I Sbjct: 60 RALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIR 119 Query: 537 FDPVRTKVVDIERHFQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTDKSTI 695 + D++ F +G + + I + F FVQ++ +A A+ + I Sbjct: 120 NLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEI 179 Query: 696 LDRVVTVEYAFRDD 737 R V V++A D Sbjct: 180 KGRTVAVDWAVAKD 193
>Q9Z1D1:IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 - Mus musculus| (Mouse) Length = 320 Score = 44.7 bits (104), Expect = 0.001 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N +TR++DL+ LF +G I RI + G+AF+ F DA AI +S Sbjct: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-- 302 Query: 414 FGHSRRRLSVEWSR 455 FG+ L+VEW++ Sbjct: 303 FGYDHLILNVEWAK 316 Score = 33.5 bits (75), Expect = 2.2 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Frame = +3 Query: 450 SRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN-- 623 SR+ E + NR A T+ V N T+ D++ F+P+G I+ I + K+ Sbjct: 223 SRRGESMQPNRRADDNA------TIRVTNLSE-DTRETDLQELFRPFGSISRIYLAKDKT 275 Query: 624 ------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 FAF+ + +EDA+ A+ ++ VE+A Sbjct: 276 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
>O75821:IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 - Homo sapiens| (Human) Length = 320 Score = 44.7 bits (104), Expect = 0.001 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N +TR++DL+ LF +G I RI + G+AF+ F DA AI +S Sbjct: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-- 302 Query: 414 FGHSRRRLSVEWSR 455 FG+ L+VEW++ Sbjct: 303 FGYDHLILNVEWAK 316 Score = 33.5 bits (75), Expect = 2.2 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Frame = +3 Query: 450 SRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN-- 623 SR+ E + NR A T+ V N T+ D++ F+P+G I+ I + K+ Sbjct: 223 SRRGESMQPNRRADDNA------TIRVTNLSE-DTRETDLQELFRPFGSISRIYLAKDKT 275 Query: 624 ------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 FAF+ + +EDA+ A+ ++ VE+A Sbjct: 276 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
>Q3ZC12:IF34_BOVIN Eukaryotic translation initiation factor 3 subunit 4 - Bos taurus| (Bovine) Length = 320 Score = 44.7 bits (104), Expect = 0.001 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +3 Query: 258 NFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAE 413 N +TR++DL+ LF +G I RI + G+AF+ F DA AI +S Sbjct: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-- 302 Query: 414 FGHSRRRLSVEWSR 455 FG+ L+VEW++ Sbjct: 303 FGYDHLILNVEWAK 316 Score = 33.5 bits (75), Expect = 2.2 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Frame = +3 Query: 450 SRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN-- 623 SR+ E + NR A T+ V N T+ D++ F+P+G I+ I + K+ Sbjct: 223 SRRGESMQPNRRADDNA------TIRVTNLSE-DTRETDLQELFRPFGSISRIYLAKDKT 275 Query: 624 ------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 FAF+ + +EDA+ A+ ++ VE+A Sbjct: 276 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
>Q8C7E9:CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit, tau variant - Mus| musculus (Mouse) Length = 632 Score = 44.7 bits (104), Expect = 0.001 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ G + R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEE 464 +R L+ EF S R L V+ + E+ Sbjct: 74 MRNLNGREF--SGRALRVDNAASEK 96
>Q9H0L4:CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit, tau variant - Homo| sapiens (Human) Length = 616 Score = 44.7 bits (104), Expect = 0.001 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDA 389 ++R VF GN YE + L+ +FS+ G + R GY F +QD+ A A Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73 Query: 390 IRRLSNAEFGHSRRRLSVEWSRQEE 464 +R L+ EF S R L V+ + E+ Sbjct: 74 MRNLNGREF--SGRALRVDNAASEK 96
>Q01085:TIAR_HUMAN Nucleolysin TIAR - Homo sapiens (Human)| Length = 375 Score = 44.3 bits (103), Expect = 0.001 Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 14/195 (7%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI------KSGYAFVYFQDERDAEDAIRRL 401 R ++ GN + + + +LFS+ GP + + Y FV F + RDA A+ + Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 + + + + V W+ P ++ + T +FV + P T DI+ F Sbjct: 69 NGRKI--LGKEVKVNWAT----TPSSQKKDTSNHFH----VFVGDLSPEIT-TEDIKSAF 117 Query: 582 QPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDD 737 P+GKI++ R+ K + FV + + DA A+ + R + +A R Sbjct: 118 APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177 Query: 738 DNERDDRHGSPRQGR 782 + + + +Q R Sbjct: 178 PAPKSTQENNTKQLR 192
>Q05196:PABP5_ARATH Polyadenylate-binding protein 5 - Arabidopsis thaliana (Mouse-ear| cress) Length = 668 Score = 44.3 bits (103), Expect = 0.001 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 14/196 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 VF N D L FS +G I + GY FV F+ E A+ AI +L+ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 + + RQ+ ++ A P+ T + P ++++ F Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSES-------GAVPSFTNVYVKNLPKEITDDELKKTFG 246 Query: 585 PYGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 YG I++ + K+ F FV + E A+VAV K + ++ + V+ V A + D Sbjct: 247 KYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306 Query: 744 ERDDRHGSPRQGRDRY 791 E + R ++ R+ Sbjct: 307 EEELRRKFEQERISRF 322
>P42731:PABP2_ARATH Polyadenylate-binding protein 2 - Arabidopsis thaliana (Mouse-ear| cress) Length = 629 Score = 44.3 bits (103), Expect = 0.001 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 14/185 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 +F N D L FS +G I + GY FV + +E A+ AI +L+ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 + + RQE N+ + T ++V N T D++ F Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTN--------VYVKNLAESTTDD-DLKNAFG 236 Query: 585 PYGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 YGKI + + K+ F FV +E +DA+ AV + D+ V A + + Sbjct: 237 EYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296 Query: 744 ERDDR 758 E + R Sbjct: 297 ETELR 301
>O42254:IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 - Gallus gallus| (Chicken) Length = 576 Score = 44.3 bits (103), Expect = 0.001 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 8/210 (3%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFS--KYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNA 410 M ++ GN + +DLE++F+ K + +KSGYAFV DE+ A AI S Sbjct: 1 MNKLYIGNLNESVTPADLEKVFNDHKISFSGQFLVKSGYAFVDCPDEQWAMKAIETFSGK 60 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP-VRTKVVDIERHFQP 587 H ++L +E S VPK + +R + + N P +R +V+D Sbjct: 61 VELHG-KQLEIEHS-----VPKK---------QRSRKIQIRNIPPQLRWEVLD--GLLAQ 103 Query: 588 YGKIAN---IRIRKNFAFVQ--YEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERD 752 YG + N + A V Y +E A+ K + + + V+ V Y D+ + + Sbjct: 104 YGTVENCEQVNTDSETAVVNVTYTNREQTRQAIMKLNGHQLENHVLKVSY-IPDEQSVQ- 161 Query: 753 DRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 P GR R G RG R GSP G Sbjct: 162 ----GPENGR-RGGFGARGAPRQGSPVTAG 186
>Q8WXF0:SRR35_HUMAN 35 kDa SR repressor protein - Homo sapiens (Human)| Length = 261 Score = 43.9 bits (102), Expect = 0.002 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK--------SGYAFVYFQDERDAEDAIRRL 401 +F N TR DL R F +YGPI + I G+A+V F+D RDAEDA+ L Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVP---KNRDR 488 + R++ +++++ + P K+++R Sbjct: 72 NRKWV--CGRQIEIQFAQGDRKTPGQMKSKER 101 Score = 37.7 bits (86), Expect = 0.12 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 12/125 (9%) Frame = +3 Query: 510 PTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIR--------KNFAFVQYEMQEDASV 665 P +LF+ N T+ D+ R F YG I ++ I + FA+VQ+E DA Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66 Query: 666 AVNKTDKSTILDRVVTVEYAFRD----DDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPR 833 A+ ++ + R + +++A D + +RH R SP + R S Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSS 126 Query: 834 RGGDR 848 G +R Sbjct: 127 WGRNR 131
>Q871A4:PPIL4_NEUCR Peptidyl-prolyl cis-trans isomerase-like 4 - Neurospora crassa| Length = 494 Score = 43.9 bits (102), Expect = 0.002 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Frame = +3 Query: 426 RRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIAN 605 RRR E + Q + D P P LFV +PV T D+E F +GKI + Sbjct: 223 RRRREREAAAQALTLEMMGDLPFAEVKPPENVLFVCKLNPVTTD-EDLELIFSRFGKILS 281 Query: 606 IRIRKN--------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRH 761 + ++ +AF+++E ++ A +K D I DR + V+ F ++ D Sbjct: 282 CEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIHVD--FSQSVSKLSDVW 339 Query: 762 GSPRQGRDRYGSPRRGGDRYG 824 S + R + RRGG +G Sbjct: 340 RSETNSK-RKSAARRGGGGWG 359 Score = 36.6 bits (83), Expect = 0.26 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 17/92 (18%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLS-------- 404 T DLE +FS++G I ++ K+G YAF+ F+D++ E+A ++ Sbjct: 264 TTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRR 323 Query: 405 -NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTG 497 + +F S +LS W + K+ R G Sbjct: 324 IHVDFSQSVSKLSDVWRSETNSKRKSAARRGG 355
>Q75A83:MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 - Ashbya gossypii| (Yeast) (Eremothecium gossypii) Length = 838 Score = 43.9 bits (102), Expect = 0.002 Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 21/187 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------------GYAFVYFQDERDAED 386 +F N ++ T + L F + +K+ G+ F+ F+ + A Sbjct: 614 IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGA 673 Query: 387 AIRRLSNAEF-GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVV 563 I + A GH ++ ++ S ++ +PK G+ K + + V N P Sbjct: 674 VIAAMDGAVIDGH---KIQLKISHKQSSLPKTSK---GSKKKISGKIIVKNL-PFEATRK 726 Query: 564 DIERHFQPYGKIANIRIRKNF-------AFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 D+ F +G++ ++R+ K F AFV++ + +A A+++ +L R + ++Y Sbjct: 727 DVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQY 786 Query: 723 AFRDDDN 743 A ++ D+ Sbjct: 787 AEQESDD 793 Score = 34.3 bits (77), Expect = 1.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F N Y+ + D ++LFS YG + + + G+A+V F+D A +A L Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 402 SNAEF 416 F Sbjct: 363 DKQIF 367
>Q10193:SRP1_SCHPO Pre-mRNA-splicing factor srp1 - Schizosaccharomyces pombe (Fission| yeast) Length = 275 Score = 43.5 bits (101), Expect = 0.002 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAI 392 ++R ++ F R +L F +GP+ R DI +AFV ++D RDAEDA Sbjct: 5 SLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAY 64 Query: 393 RRLSNAEFGHSRRRLSVEWSRQEEP 467 + L VEW++Q P Sbjct: 65 YEVHGRRLERGGGVLRVEWAKQPPP 89 Score = 37.7 bits (86), Expect = 0.12 Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 11/176 (6%) Frame = +3 Query: 516 RTLFVINF-DPVRTKVVDIERHFQPYGK-------IANIRIRKNFAFVQYEMQEDASVAV 671 RTL+V F D +R + + E F+P+G I R + FAFV+YE DA A Sbjct: 7 RTLYVTGFRDGMRARELAYE--FEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAY 64 Query: 672 NKTDKSTILDR---VVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 + L+R V+ VE+A + + + G R+ RGG +G R Sbjct: 65 YEV-HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRE---------RGGRVHGDSGRLR 114 Query: 843 DRYGSPKRANQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYGAPYGRSRSPVYDR 1010 R SP A + +P GRSRSP YDR Sbjct: 115 SRSPSPHEARS---------RSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDR 161
>Q24491:RX21_DROME RNA-binding protein Rsf1 - Drosophila melanogaster (Fruit fly)| Length = 197 Score = 43.5 bits (101), Expect = 0.002 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Frame = +3 Query: 549 RTKVVDIERHFQPYGKIANIRIRKN---FAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 + K D+E F YGK+ ++ I N FAFV++E ++DA A + + S +L + VE Sbjct: 17 KVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 76 Query: 720 YAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDR 818 + G PRQGR R G RGG R Sbjct: 77 IS-----------KGRPRQGR-RGGPMDRGGRR 97 Score = 42.4 bits (98), Expect = 0.005 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK---SGYAFVYFQDERDAEDAIRRLSNAEF 416 V+ GN + ++ DLE F+KYG + + I G+AFV F+ DAE A L+ +E Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSEL 68 Query: 417 GHSRRRLSVEWSRQEE 464 S+ R+ + R + Sbjct: 69 LGSQLRVEISKGRPRQ 84
>P39684:PES4_YEAST Protein PES4 - Saccharomyces cerevisiae (Baker's yeast)| Length = 611 Score = 43.5 bits (101), Expect = 0.002 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 35/161 (21%) Frame = +3 Query: 300 FSKYGPIR--RIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVP 473 FS+YG I ++D + FVYF+DE+ A + I+ +N F + + + ++ VP Sbjct: 202 FSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVP 261 Query: 474 KNRDRPTGADAK---------------------------PTRTLFVINFDPVRTKVVDIE 572 + + DA+ ++F+ N + T+ DI Sbjct: 262 NFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTR-DDIL 320 Query: 573 RHFQPYGKIANI------RIRKNFAFVQYEMQEDASVAVNK 677 F G I +I +++ +AFV Y+ D+ A+ + Sbjct: 321 NFFSEVGPIKSIYLSNATKVKYLWAFVTYKNSSDSEKAIKR 361 Score = 42.4 bits (98), Expect = 0.005 Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 17/203 (8%) Frame = +3 Query: 207 GWESEGKGL---TMRPVFCGNFDYETRQSDLERLFSKYGPIRRI------DIKSGYAFVY 359 G + E K + + +F N T + D+ FS+ GPI+ I +K +AFV Sbjct: 289 GNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLWAFVT 348 Query: 360 FQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF 539 +++ D+E AI+R +N F ++L V ++ +E +R +++ TLF+ N Sbjct: 349 YKNSSDSEKAIKRYNN--FYFRGKKLLVTRAQDKE------ERAKFIESQKISTLFLENL 400 Query: 540 DPVRT----KVVDIERHFQPYGKIANIRIRKNFA----FVQYEMQEDASVAVNKTDKSTI 695 V K + + + +P+ KI +N + F+++ EDA+ N + + Sbjct: 401 SAVCNKEFLKYLCHQENIRPF-KIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLNNRLV 459 Query: 696 LDRVVTVEYAFRDDDNERDDRHG 764 +VT + +++ + D +G Sbjct: 460 GGSIVTTSWERQNNAPKYHDGYG 482
>Q6PFR5:TRA2A_MOUSE Transformer-2 protein homolog - Mus musculus (Mouse)| Length = 281 Score = 43.1 bits (100), Expect = 0.003 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FS+YGP+ +++ G+AFVYF+ D+++A+ R + E Sbjct: 128 TTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMEL--DG 185 Query: 429 RRLSVEWS---RQEEPVP 473 RR+ V++S R P P Sbjct: 186 RRIRVDYSITKRAHTPTP 203 Score = 34.3 bits (77), Expect = 1.3 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%) Frame = +3 Query: 450 SRQEEPVPKNRDRPTGADAKPTRTLFVINFD-PVRTKVVDIERHFQPYGKIANIRI---- 614 SR P+ NR R TG+ A P + F + T D+ F YG ++ + + Sbjct: 94 SRSHSPM-SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQ 152 Query: 615 ----RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 + FAFV +E +D+ A+ + + + R + V+Y+ Sbjct: 153 RTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>Q13595:TRA2A_HUMAN Transformer-2 protein homolog - Homo sapiens (Human)| Length = 282 Score = 43.1 bits (100), Expect = 0.003 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T + DL +FS+YGP+ +++ G+AFVYF+ D+++A+ R + E Sbjct: 130 TTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMEL--DG 187 Query: 429 RRLSVEWS---RQEEPVP 473 RR+ V++S R P P Sbjct: 188 RRIRVDYSITKRAHTPTP 205 Score = 35.4 bits (80), Expect = 0.58 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 9/148 (6%) Frame = +3 Query: 450 SRQEEPVPKNRDRPTGADAKPTRTLFVINFD-PVRTKVVDIERHFQPYGKIANIRI---- 614 SR P+ NR R TG+ A P + F + T D+ F YG ++ + + Sbjct: 96 SRSHSPM-SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQ 154 Query: 615 ----RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGR 782 + FAFV +E +D+ A+ + + + R + V+Y+ R +P G Sbjct: 155 RTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSI-------TKRAHTPTPG- 206 Query: 783 DRYGSPRRGGDRYGSPRRGGDRYGSPKR 866 G P G G GG G +R Sbjct: 207 IYMGRPTHSGGGGGGGGGGGGGGGGRRR 234
>O97018:SXL_CHRRU Sex-lethal homolog - Chrysomya rufifacies (Hairy maggot blowfly)| Length = 307 Score = 43.1 bits (100), Expect = 0.003 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 16/146 (10%) Frame = +3 Query: 285 DLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLS 440 +L LF GPI I GYAFV F E DA++AI+ L+ + R ++S Sbjct: 100 ELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVS 159 Query: 441 VEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRK 620 RP G K T L+V N P ++E+ F YG I I + Sbjct: 160 YA-------------RPGGESIKDT-NLYVTNL-PRTITDDELEKIFGKYGNIVQKNILR 204 Query: 621 N--------FAFVQYEMQEDASVAVN 674 + AFV++ +E+A A++ Sbjct: 205 DKLTGKPRGVAFVRFNKREEAQEAIS 230
>Q4VXU2:PAP1L_HUMAN Polyadenylate-binding protein 1-like - Homo sapiens (Human)| Length = 614 Score = 43.1 bits (100), Expect = 0.003 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 + G G + ++ G+ + ++ L FS GPI I + GYA++ FQ Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62 Query: 372 RDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF-DPV 548 DAE A+ ++ + + + WS+++ + K+ +F+ N D + Sbjct: 63 ADAERALDTMNFEML--KGQPIRIMWSQRDPGLRKSG----------VGNIFIKNLEDSI 110 Query: 549 RTKVVDIERHFQPYGKIANIRIR------KNFAFVQYEMQEDASVAVNKTDKSTILDRVV 710 K + F +G I + ++ + F FV +E E A A+N + + DR V Sbjct: 111 DNKA--LYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168 Query: 711 TV 716 V Sbjct: 169 FV 170
>Q6DJI9:ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Xenopus laevis (African clawed frog) Length = 218 Score = 42.7 bits (99), Expect = 0.004 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + +DL R+FSKYG + ++ I G +FV F D+ Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDK 61 Query: 372 RDAEDAIRRLSNAE-FGHS 425 A++ +R L+N + FG + Sbjct: 62 ESAQNCVRGLNNKQLFGRA 80
>O88477:IF2B1_MOUSE Insulin-like growth factor 2 mRNA-binding protein 1 - Mus musculus| (Mouse) Length = 577 Score = 42.7 bits (99), Expect = 0.004 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 8/210 (3%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFS--KYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNA 410 M ++ GN + +DLE++F+ K + +KSGYAFV DE A AI S Sbjct: 1 MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFS-G 59 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP-VRTKVVDIERHFQP 587 + +RL +E S VPK + +R + + N P +R +V+D Sbjct: 60 KVELQGKRLEIEHS-----VPKK---------QRSRKIQIRNIPPQLRWEVLD--SLLAQ 103 Query: 588 YGKIAN---IRIRKNFAFVQ--YEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERD 752 YG + N + A V Y +E A+ K + + + + V Y + + Sbjct: 104 YGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQITQ-- 161 Query: 753 DRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 P GR R G RG R GSP G Sbjct: 162 ----GPENGR-RGGFGSRGQPRQGSPVAAG 186
>P48810:RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F - Drosophila| melanogaster (Fruit fly) Length = 385 Score = 42.4 bits (98), Expect = 0.005 Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 18/232 (7%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAI 392 +R +F G DY T L+ F K+G I + + G+ F+ + ++A Sbjct: 23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA- 81 Query: 393 RRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIE 572 NA H +VE R VP+ A A + LFV + + Sbjct: 82 ---QNAR-PHKIDGRTVEPKR---AVPRQEIDSPNAGA-TVKKLFVGGLRDDHDEEC-LR 132 Query: 573 RHFQPYGKIANIRI--------RKNFAFVQYEMQEDA-SVAVNKTDKSTILDRVVTVEYA 725 +F+ +G+I ++ I ++ FAF++++ + + + KT +I ++ + V+ A Sbjct: 133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKT--HSIKNKTLDVKKA 190 Query: 726 FRDDDNERDDRHGSPRQGRDRYGSPRRGG-DRYGSPRRGGDRYGSPKRANQG 878 D +R G GR G PR GG G +GG +G R N G Sbjct: 191 IAKQDMDRQGGGG----GR---GGPRAGGRGGQGDRGQGGGGWGGQNRQNGG 235
>O13674:MUG24_SCHPO Meiotically up-regulated gene 24 protein - Schizosaccharomyces| pombe (Fission yeast) Length = 654 Score = 42.4 bits (98), Expect = 0.005 Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 21/134 (15%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAEDAIRRLSNAE 413 R VF GN + ++E F K+G I I I K AFV+F + RDA +R LS Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSCDP 358 Query: 414 FGHSRR----------------RLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP 545 HS R S S+Q +R R + RT+F+ N Sbjct: 359 DYHSWRIFFGSDRCANHPPSFDERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLGNLH- 417 Query: 546 VRTK---VVDIERH 578 +TK + D+ RH Sbjct: 418 TKTKGHEICDLIRH 431 Score = 32.3 bits (72), Expect = 4.9 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 4/158 (2%) Frame = +3 Query: 213 ESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAED 386 + E K R VF GN +T+ ++ L ++G ++ + FV F A Sbjct: 400 QQESKDNGNRTVFLGNLHTKTKGHEICDLI-RHGGLQDFHYIPEKHICFVTFITYSAANA 458 Query: 387 AIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVD 566 L+ E RR+ V W ++ P+P+ + A +R ++ + T + Sbjct: 459 FHDYLAEEEVLLHGRRIKVGWGKESGPLPRVLEDSILMGA--SRNVYFSHISDSLT-TEE 515 Query: 567 IERHFQPYGKIANIRIRKN--FAFVQYEMQEDASVAVN 674 +E + YG+I +I+ KN FV Y +A AVN Sbjct: 516 LELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVN 553
>Q6DEY7:EPAB_XENTR Embryonic polyadenylate-binding protein - Xenopus tropicalis| (Western clawed frog) (Silurana tropicalis) Length = 629 Score = 42.4 bits (98), Expect = 0.005 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G G + ++ G+ + ++ L FS GPI I + GYA++ FQ D Sbjct: 5 GAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPAD 64 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFD-PVRT 554 AE A+ ++ R + + WS+ R G +F+ N D + Sbjct: 65 AERALDTMNFEVI--KGRPIRIMWSQ----------RDPGLRKSGVGNVFIKNLDESIDN 112 Query: 555 KVVDIERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 K + F +G I + ++ + + FV +E QE A+ A+ + + DR V V Sbjct: 113 KA--LYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>Q10277:MSA1_SCHPO Multicopy suppressor of sporulation protein msa1 -| Schizosaccharomyces pombe (Fission yeast) Length = 533 Score = 42.0 bits (97), Expect = 0.006 Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 12/107 (11%) Frame = +3 Query: 441 VEWSRQEEPVPKNRD----RPTGADAKPTRTLFVINFDPVRTK---VVDIERHFQPYGKI 599 +E + P+P + P+ KP LFV + + R++ ++ +FQ +G + Sbjct: 50 LETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPL 109 Query: 600 ANIRIRKN-----FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 ++++ K+ ++FVQ++ +DAS A+++ + + R + +E A Sbjct: 110 LHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERA 156
>Q5AJS6:MRD1_CANAL Multiple RNA-binding domain-containing protein 1 - Candida albicans| (Yeast) Length = 841 Score = 42.0 bits (97), Expect = 0.006 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 7/144 (4%) Frame = +3 Query: 333 IKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKP 512 + G+ FV F+ + A AI L + +L + +Q + + +G +K Sbjct: 661 LSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLS-HKQGTGTSASSIKKSGKSSK- 718 Query: 513 TRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNF-------AFVQYEMQEDASVAV 671 +I P D+ F +G++ ++R+ K F AFV++ + ++A A+ Sbjct: 719 ----IIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAM 774 Query: 672 NKTDKSTILDRVVTVEYAFRDDDN 743 ++ + +L R + ++YA +D +N Sbjct: 775 SQLEGVHLLGRRLVMQYAEQDPEN 798 Score = 36.2 bits (82), Expect = 0.34 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F N YE + D LFS+YG + + I G+ +V F + DA A R L Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 402 SNAEF 416 F Sbjct: 372 DKQIF 376
>Q8CGX0:IF2B1_RAT Insulin-like growth factor 2 mRNA-binding protein 1 - Rattus| norvegicus (Rat) Length = 577 Score = 42.0 bits (97), Expect = 0.006 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 8/210 (3%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFS--KYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNA 410 M ++ GN + +DLE++F+ K + +KSGYAFV DE A AI S Sbjct: 1 MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFS-G 59 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP-VRTKVVDIERHFQP 587 + +RL +E S VPK + +R + + N P +R +V+D Sbjct: 60 KVELQGKRLEIEHS-----VPKK---------QRSRKIQIRNIPPQLRWEVLD--SLLAQ 103 Query: 588 YGKIAN---IRIRKNFAFVQ--YEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERD 752 YG + N + A V Y +E A+ K + + + + V Y + + Sbjct: 104 YGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQIAQ-- 161 Query: 753 DRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 P GR R G RG R GSP G Sbjct: 162 ----GPENGR-RGGFGSRGQPRQGSPVAAG 186
>Q9NZI8:IF2B1_HUMAN Insulin-like growth factor 2 mRNA-binding protein 1 - Homo sapiens| (Human) Length = 577 Score = 42.0 bits (97), Expect = 0.006 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 8/210 (3%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFS--KYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNA 410 M ++ GN + +DLE++F+ K + +KSGYAFV DE A AI S Sbjct: 1 MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFS-G 59 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP-VRTKVVDIERHFQP 587 + +RL +E S VPK + +R + + N P +R +V+D Sbjct: 60 KVELQGKRLEIEHS-----VPKK---------QRSRKIQIRNIPPQLRWEVLD--SLLAQ 103 Query: 588 YGKIAN---IRIRKNFAFVQ--YEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERD 752 YG + N + A V Y +E A+ K + + + + V Y + + Sbjct: 104 YGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQIAQ-- 161 Query: 753 DRHGSPRQGRDRYGSPRRGGDRYGSPRRGG 842 P GR R G RG R GSP G Sbjct: 162 ----GPENGR-RGGFGSRGQPRQGSPVAAG 186
>O43040:CTF1_SCHPO Cleavage and termination factor 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 363 Score = 42.0 bits (97), Expect = 0.006 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK--------SGYAFVYFQDERDAEDAIRRL 401 VF GN Y+ + + +F++ GP++ + GY F F D A+R+L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 402 SNAEFGHSRRRLSVEW 449 +N+E G R++ VE+ Sbjct: 69 NNSELG--PRKIRVEF 82
>O93235:CIRBP_XENLA Cold-inducible RNA-binding protein - Xenopus laevis (African clawed| frog) Length = 163 Score = 42.0 bits (97), Expect = 0.006 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%) Frame = +3 Query: 567 IERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 +E+ F YG+I+ + + K+ F FV +E +DA A+ + ++ R + V+ Sbjct: 21 LEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQ 80 Query: 723 AFRDDDNERDDRHGSPRQGRD--RYGSPRRGGDR-YGSPR---RGGDRYGS 857 A + R G GR R G R GGDR YGS R R G GS Sbjct: 81 AGKSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGS 131 Score = 38.5 bits (88), Expect = 0.068 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++ET + LE+ F+KYG I + + G+ FV F++ DA+DA+ + Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 402 S 404 + Sbjct: 67 N 67
>O17310:SXL_MUSDO Sex-lethal homolog - Musca domestica (House fly)| Length = 324 Score = 41.6 bits (96), Expect = 0.008 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 16/146 (10%) Frame = +3 Query: 285 DLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLS 440 +L LF GPI I GYAFV F E DA++AI+ ++ + R ++S Sbjct: 117 ELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVS 176 Query: 441 VEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRK 620 RP G K T L+V N P ++E+ F YG I I + Sbjct: 177 YA-------------RPGGESIKDT-NLYVTNL-PRTITDDELEKIFGKYGNIVQKNILR 221 Query: 621 N--------FAFVQYEMQEDASVAVN 674 + AFV++ +E+A A++ Sbjct: 222 DKLTGRPRGVAFVRFNKREEAQEAIS 247
>Q44556:RBPD_ANASP Putative RNA-binding protein rbpD - Anabaena sp. (strain PCC 7120)| Length = 94 Score = 41.6 bits (96), Expect = 0.008 Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 8/81 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ GN Y ++DL+ +F+ YG ++R+ + + G+AFV ++ + AI L Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL 62 Query: 402 SNAEFGHSRRRLSVEWSRQEE 464 AE+ + R++ R+++ Sbjct: 63 DGAEWMGRQLRVNKAKPREDD 83
>Q9CXG3:PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 - Mus musculus (Mouse)| Length = 492 Score = 41.6 bits (96), Expect = 0.008 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T DLE +FS++GPIR ++ K+G YAF+ F+ E D E A ++ N Sbjct: 251 TTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLI--DD 308 Query: 429 RRLSVEWSR 455 RR+ V++S+ Sbjct: 309 RRIHVDFSQ 317 Score = 39.7 bits (91), Expect = 0.031 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQ 638 D P P LFV +PV T D+E F +G I + + ++ +AF++ Sbjct: 229 DLPDADIKPPENVLFVCKLNPVTTDE-DLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIE 287 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +E +ED A K D I DR + V+++ Sbjct: 288 FEKEEDCEKAFFKMDNVLIDDRRIHVDFS 316
>Q8WUA2:PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 - Homo sapiens (Human)| Length = 492 Score = 41.6 bits (96), Expect = 0.008 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T DLE +FS++GPIR ++ K+G YAF+ F+ E D E A ++ N Sbjct: 251 TTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLI--DD 308 Query: 429 RRLSVEWSR 455 RR+ V++S+ Sbjct: 309 RRIHVDFSQ 317 Score = 39.7 bits (91), Expect = 0.031 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQ 638 D P P LFV +PV T D+E F +G I + + ++ +AF++ Sbjct: 229 DLPDADIKPPENVLFVCKLNPVTTDE-DLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIE 287 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +E +ED A K D I DR + V+++ Sbjct: 288 FEKEEDCEKAFFKMDNVLIDDRRIHVDFS 316
>O13620:MRD1_SCHPO Multiple RNA-binding domain-containing protein 1 -| Schizosaccharomyces pombe (Fission yeast) Length = 833 Score = 41.6 bits (96), Expect = 0.008 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 20/187 (10%) Frame = +3 Query: 225 KGLTMRPVFCGNFDYETRQSDLERLF------------SKYGPIRRIDIKS-GYAFVYFQ 365 + L ++ N ++ T+Q + +++F +K P R S G+ FV F+ Sbjct: 614 ESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFK 673 Query: 366 DERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP 545 D+ A A+ ++ F +L ++ S Q V + +KP T +I P Sbjct: 674 DKASAVAAMHAMNG--FVLDGHKLEIKLSHQG--VDAAAEVRKQDSSKPKGTKILIKNLP 729 Query: 546 VRTKVVDIERHFQPYGKIANIRIRK-------NFAFVQYEMQEDASVAVNKTDKSTILDR 704 D++ YG++ ++R+ K FAF ++ +A+ A+ + +L R Sbjct: 730 FEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGR 789 Query: 705 VVTVEYA 725 + ++YA Sbjct: 790 HLVLQYA 796
>Q6CEW9:MRD1_YARLI Multiple RNA-binding domain-containing protein 1 - Yarrowia| lipolytica (Candida lipolytica) Length = 828 Score = 41.2 bits (95), Expect = 0.011 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Frame = +3 Query: 333 IKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKP 512 + G+ FV F + AE A + + + +L + Q+E + + K Sbjct: 649 LSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETK--------KA 700 Query: 513 TRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNF-------AFVQYEMQEDASVAV 671 + +I P D+++ F +G + +R+ K F AF +Y ++A A+ Sbjct: 701 IDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAM 760 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDD 755 + + +L R + ++YA D N ++ Sbjct: 761 SALQGTHLLGRRLVLQYAQADASNAEEE 788
>Q05966:GRP10_BRANA Glycine-rich RNA-binding protein 10 - Brassica napus (Rape)| Length = 169 Score = 41.2 bits (95), Expect = 0.011 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 14/112 (12%) Frame = +3 Query: 564 DIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVE 719 ++ER F +G++ + +I + F FV ++ ++ A+++ + + R +TV Sbjct: 21 ELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITV- 79 Query: 720 YAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYG------SPRRGGDRYGS 857 NE R G GR G RGG YG RRGG YGS Sbjct: 80 -------NEAQSRGGGGGGGRGGGGYGGRGGGGYGGGGGGYGDRRGGGGYGS 124 Score = 38.1 bits (87), Expect = 0.089 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = +3 Query: 249 FCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRLS 404 F G + T ++LER FS++G + R G+ FV F+DE+ +DAI ++ Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 405 NAE 413 E Sbjct: 69 GKE 71
>Q9WX37:RBPE_ANASP Putative RNA-binding protein rbpE - Anabaena sp. (strain PCC 7120)| Length = 99 Score = 40.8 bits (94), Expect = 0.014 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ GN Y Q DL ++FS+YG + R+ + + G+ FV + + AI+ L Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62 Query: 402 SNAEFGHSRRRLSVEWSRQEE 464 AE+ R L V +R E Sbjct: 63 DGAEW--MGRVLKVNKARPRE 81
>P53883:NOP13_YEAST Nucleolar protein 13 - Saccharomyces cerevisiae (Baker's yeast)| Length = 403 Score = 40.8 bits (94), Expect = 0.014 Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 41/250 (16%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLF--------SKYGPIRRIDI-----------------KSGYA 350 V+ GN ++T + DL R F + + DI G+ Sbjct: 127 VWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGFC 186 Query: 351 FVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFV 530 +++F++ + A+ LS + + R + ++ S P D + P+R LFV Sbjct: 187 YMFFKNVEQMK-AVLELSESHL--NGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFV 243 Query: 531 --INFDPVRTKVVD--IERHFQPYGKIANIRIR--------KNFAFVQYEMQEDASVAVN 674 ++FD V D + +HFQ G I IR+ K FAF+ ++ +E ++ + Sbjct: 244 GNLSFD-----VTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELK 298 Query: 675 KTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYG----SPRRGGDRYGSPRRGG 842 I R + +EY +D ++R R R+ S +G DR G Sbjct: 299 DKSCRKIAGRPLRMEYG--EDRSKRQVRKKVENVSRNNSSSFDISNNKGYDRAGQDNGSK 356 Query: 843 DRYGSPKRAN 872 Y KR+N Sbjct: 357 PEY---KRSN 363
>P38922:HRB1_YEAST Protein HRB1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 454 Score = 40.8 bits (94), Expect = 0.014 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIK-------SGYAFVYFQDERDA 380 G G R ++C N + T +SDL LF G + +++ +G A V + + DA Sbjct: 370 GGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDA 429 Query: 381 EDAIRRLSNAEFG 419 + I RL+N +G Sbjct: 430 DVCIERLNNYNYG 442
>Q5RF83:CIRBP_PONPY Cold-inducible RNA-binding protein - Pongo pygmaeus (Orangutan)| Length = 172 Score = 40.8 bits (94), Expect = 0.014 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +3 Query: 522 LFV--INFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAV 671 LFV ++FD T +E+ F YG+I+ + + K+ F FV +E +DA A+ Sbjct: 8 LFVGGLSFD---TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR- 848 + ++ R + V+ A + DN G GR + R G G R GGDR Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR--GRGRGFSRGGGDRG 122 Query: 849 YG 854 YG Sbjct: 123 YG 124 Score = 40.0 bits (92), Expect = 0.023 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++T + LE++FSKYG I + + G+ FV F++ DA+DA+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 402 S 404 + Sbjct: 68 N 68
>Q14011:CIRBP_HUMAN Cold-inducible RNA-binding protein - Homo sapiens (Human)| Length = 172 Score = 40.8 bits (94), Expect = 0.014 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +3 Query: 522 LFV--INFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAV 671 LFV ++FD T +E+ F YG+I+ + + K+ F FV +E +DA A+ Sbjct: 8 LFVGGLSFD---TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR- 848 + ++ R + V+ A + DN G GR + R G G R GGDR Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR--GRGRGFSRGGGDRG 122 Query: 849 YG 854 YG Sbjct: 123 YG 124 Score = 40.0 bits (92), Expect = 0.023 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++T + LE++FSKYG I + + G+ FV F++ DA+DA+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 402 S 404 + Sbjct: 68 N 68
>P38741:YHC4_YEAST Uncharacterized RNA-binding protein YHL024W - Saccharomyces| cerevisiae (Baker's yeast) Length = 713 Score = 40.4 bits (93), Expect = 0.018 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Frame = +3 Query: 516 RTLFVINFDPVRTKVVDIERHFQPYGKIANIRI----RKNFAFVQYEMQEDASVAVNKTD 683 R++FV D T+ ++ R F +GKI +I + FAF++YE +E A+ A+ + Sbjct: 346 RSIFVGQLDKETTRE-ELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAALESEN 404 Query: 684 KSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPK 863 + L++ + V+Y + R +R S + G + + R G G + +P Sbjct: 405 HAIFLNKTMHVQY---KEVGGRHNRKFSGKNGGSNFNHHQFFSTRSGKTFTGPELNLAPP 461 Query: 864 RAN 872 N Sbjct: 462 PIN 464
>Q9WX39:RBPF_ANASP Putative RNA-binding protein rbpF - Anabaena sp. (strain PCC 7120)| Length = 105 Score = 40.4 bits (93), Expect = 0.018 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ GN YE Q D+ +F++YG ++R+ + + G+AFV + + AI L Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGL 62 Query: 402 SNAEF 416 AE+ Sbjct: 63 DGAEW 67
>P0C196:PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 - Ustilago maydis (Smut| fungus) Length = 551 Score = 40.4 bits (93), Expect = 0.018 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 19/141 (13%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQ 638 D P P LFV +PV T+ D+E F +GKI + + K+ +AF++ Sbjct: 251 DLPFAEIRPPENILFVCKLNPV-TRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIE 309 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYA------FRDDDNERDDRHGSPRQGRDRYGSP 800 ++ ++DA A K + DR + V+++ D +R+ +PR + G+ Sbjct: 310 FDKKDDAERAYFKMQNVLVDDRRIWVDFSQSVSRLHGDWVKKRNAGSDAPR-AHYQSGAD 368 Query: 801 RRGGDRY-----GSPRRGGDR 848 + D Y G +RG DR Sbjct: 369 EQSVDSYRPNAGGYQKRGDDR 389 Score = 37.0 bits (84), Expect = 0.20 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 17/79 (21%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLSN------- 407 TR DLE +FS++G I ++ K+G YAF+ F + DAE A ++ N Sbjct: 273 TRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKMQNVLVDDRR 332 Query: 408 --AEFGHSRRRLSVEWSRQ 458 +F S RL +W ++ Sbjct: 333 IWVDFSQSVSRLHGDWVKK 351
>P0C1I6:PPIL4_RHIOR Peptidyl-prolyl cis-trans isomerase-like 4 - Rhizopus oryzae| (Rhizopus delemar) Length = 446 Score = 40.4 bits (93), Expect = 0.018 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 19/206 (9%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 TR DLE +FS++G I +I YAFV F+++ DAE+A ++ + Sbjct: 253 TRDEDLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVEFENKEDAEEAYFKMQSVLI--DD 310 Query: 429 RRLSVEWSRQEEPVPKN-RDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIAN 605 RR+ V++S+ + K+ + TGA + + FD + + Y + Sbjct: 311 RRIHVDFSQSVSKLHKDWIAKRTGAGKES-----MGGFDNLTKRT--------RYREEGE 357 Query: 606 IRIRKNFAFV----QYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDD----NERDDRH 761 ++++ V Y+ + D + ++ + DR Y+ R DD RDD Sbjct: 358 NNDKRDYDLVFDKGDYKRKRDEDSSRDRRRRDGSRDR-----YSSRRDDERSSRRRDDER 412 Query: 762 GSPRQ--GRDRYGSPRRGGDRYGSPR 833 S R+ R++Y DR+ S R Sbjct: 413 SSRRRDDSREKYRRRNDSRDRHSSRR 438 Score = 39.3 bits (90), Expect = 0.040 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQ 638 D P P LFV +PV T+ D+E F +G I + I ++ +AFV+ Sbjct: 231 DLPFAEVKPPENVLFVCKLNPV-TRDEDLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVE 289 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +E +EDA A K I DR + V+++ Sbjct: 290 FENKEDAEEAYFKMQSVLIDDRRIHVDFS 318
>Q6TY21:EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B - Xenopus laevis| (African clawed frog) Length = 218 Score = 40.4 bits (93), Expect = 0.018 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 8/98 (8%) Frame = +3 Query: 219 EGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDER 374 E K + R V+ GN DY + DLE FS G I RI I GYA++ F ER Sbjct: 86 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFA-ER 144 Query: 375 DAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDR 488 ++ DA + F R + V R P + DR Sbjct: 145 NSVDAAVAMDETVF--RGRTIKVLPKRTNMPGISSTDR 180 Score = 32.3 bits (72), Expect = 4.9 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 15/138 (10%) Frame = +3 Query: 486 RPTGADAKPT---RTLFVINFDPVRTKVVDIERHFQPYGKIANIRIR--------KNFAF 632 +P A+ K R+++V N D T D+E HF G I I I K +A+ Sbjct: 80 QPLSAEEKKEIDKRSVYVGNVDYGST-AQDLEAHFSSCGSINRITILCDKFSGHPKGYAY 138 Query: 633 VQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD----DDNERDDRHGSPRQGRDRYGSP 800 +++ + AV D++ R + V + +R G PR R Y Sbjct: 139 IEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNY--- 194 Query: 801 RRGGDRYGSPRRGGDRYG 854 +RG G P RG R G Sbjct: 195 QRGQRPRGRPFRGRGRPG 212
>P60825:CIRBP_RAT Cold-inducible RNA-binding protein - Rattus norvegicus (Rat)| Length = 172 Score = 40.4 bits (93), Expect = 0.018 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +3 Query: 522 LFV--INFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAV 671 LFV ++FD T +E+ F YG+I+ + + K+ F FV +E +DA A+ Sbjct: 8 LFVGGLSFD---TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR- 848 + ++ R + V+ A + DN G GR + R G G R GGDR Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRG--RGFSRGGGDRG 122 Query: 849 YG 854 YG Sbjct: 123 YG 124 Score = 39.3 bits (90), Expect = 0.040 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++T + LE++FSKYG I + + G+ FV F++ DA+DA+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 402 S 404 + Sbjct: 68 N 68
>P60824:CIRBP_MOUSE Cold-inducible RNA-binding protein - Mus musculus (Mouse)| Length = 172 Score = 40.4 bits (93), Expect = 0.018 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +3 Query: 522 LFV--INFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAV 671 LFV ++FD T +E+ F YG+I+ + + K+ F FV +E +DA A+ Sbjct: 8 LFVGGLSFD---TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR- 848 + ++ R + V+ A + DN G GR + R G G R GGDR Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRG--RGFSRGGGDRG 122 Query: 849 YG 854 YG Sbjct: 123 YG 124 Score = 39.3 bits (90), Expect = 0.040 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++T + LE++FSKYG I + + G+ FV F++ DA+DA+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 402 S 404 + Sbjct: 68 N 68
>P60826:CIRBP_CRIGR Cold-inducible RNA-binding protein - Cricetulus griseus (Chinese| hamster) Length = 172 Score = 40.4 bits (93), Expect = 0.018 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +3 Query: 522 LFV--INFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAV 671 LFV ++FD T +E+ F YG+I+ + + K+ F FV +E +DA A+ Sbjct: 8 LFVGGLSFD---TNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 672 NKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR- 848 + ++ R + V+ A + DN G GR + R G G R GGDR Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRG--RGFSRGGGDRG 122 Query: 849 YG 854 YG Sbjct: 123 YG 124 Score = 39.3 bits (90), Expect = 0.040 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G ++T + LE++FSKYG I + + G+ FV F++ DA+DA+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 402 S 404 + Sbjct: 68 N 68
>P98179:RBM3_HUMAN Putative RNA-binding protein 3 - Homo sapiens (Human)| Length = 157 Score = 40.0 bits (92), Expect = 0.023 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Frame = +3 Query: 567 IERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 +E HF +G I+ + + K+ F F+ + E ASVA+ + ++ R + V++ Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81 Query: 723 AFRDDDNERDDRHGSPRQGRDRY---GSPRRGGDRYGSPRRGGDRYG 854 A + R G+ +GR G G RY R GG YG Sbjct: 82 AGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYG 128
>P59708:PM14_MOUSE Pre-mRNA branch site protein p14 - Mus musculus (Mouse)| Length = 125 Score = 40.0 bits (92), Expect = 0.023 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLS 404 R ++ N Y+ ++ +F KYGPIR+I + + G A+V ++D DA++A LS Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP 545 F R L V + K + K + + IN DP Sbjct: 79 G--FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDP 123
>Q9Y3B4:PM14_HUMAN Pre-mRNA branch site protein p14 - Homo sapiens (Human)| Length = 125 Score = 40.0 bits (92), Expect = 0.023 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-----GYAFVYFQDERDAEDAIRRLS 404 R ++ N Y+ ++ +F KYGPIR+I + + G A+V ++D DA++A LS Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP 545 F R L V + K + K + + IN DP Sbjct: 79 G--FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDP 123
>Q15717:ELAV1_HUMAN ELAV-like protein 1 - Homo sapiens (Human)| Length = 326 Score = 40.0 bits (92), Expect = 0.023 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 22/196 (11%) Frame = +3 Query: 279 QSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRR 434 Q +L LFS G + + GY FV + +DAE AI L+ + Sbjct: 33 QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKT 90 Query: 435 LSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRI 614 + V ++R V K+ + L++ T+ D+E F +G+I N R+ Sbjct: 91 IKVSYARPSSEVIKDAN------------LYISGLPRTMTQ-KDVEDMFSRFGRIINSRV 137 Query: 615 --------RKNFAFVQYEMQEDASVAVNKTD--KSTILDRVVTVEYAFRDDDNER----D 752 + AF++++ + +A A+ + K +TV++A + N+ Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLS 197 Query: 753 DRHGSPRQGRDRYGSP 800 + SP + R+G P Sbjct: 198 QLYHSPAR---RFGGP 210
>Q8TBF4:ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Homo sapiens (Human) Length = 217 Score = 39.7 bits (91), Expect = 0.031 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + +DL R+FSKYG + ++ I G AF+ F D+ Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61 Query: 372 RDAEDAIRRLSNAE 413 A++ R ++N + Sbjct: 62 DSAQNCTRAINNKQ 75
>Q56JZ7:ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Bos taurus (Bovine) Length = 217 Score = 39.7 bits (91), Expect = 0.031 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + +DL R+FSKYG + ++ I G AF+ F D+ Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61 Query: 372 RDAEDAIRRLSNAE 413 A++ R ++N + Sbjct: 62 DSAQNCTRAINNKQ 75
>P19018:TRA2_DROME Transformer-2 sex-determining protein - Drosophila melanogaster| (Fruit fly) Length = 264 Score = 39.7 bits (91), Expect = 0.031 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 13/157 (8%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T Q + LF+KYGPI RI + G+ F+YF+ DA A S E Sbjct: 108 TSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEV--DG 165 Query: 429 RRLSVEWS---RQEEPVP--KNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYG 593 RR+ V++S R P P +P G + +F P R + V +R PY Sbjct: 166 RRIRVDFSITQRAHTPTPGVYLGRQPRGKAPR--------SFSPRRGRRVYHDRSASPYD 217 Query: 594 KIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDR 704 N R R ++ +Y+ S + N+ ++ R Sbjct: 218 ---NYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYSR 251
>P70318:TIAR_MOUSE Nucleolysin TIAR - Mus musculus (Mouse)| Length = 392 Score = 39.7 bits (91), Expect = 0.031 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 31/212 (14%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPI------------RRIDIKSG-----------YA 350 R ++ GN + + + +LFS+ GP RR++ G Y Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68 Query: 351 FVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFV 530 FV F + RDA A+ ++ + + + V W+ P ++ + T +FV Sbjct: 69 FVEFYEHRDAAAALAAMNGRKI--LGKEVKVNWAT----TPSSQKKDTSNHFH----VFV 118 Query: 531 INFDPVRTKVVDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDK 686 + P T DI+ F P+GKI++ R+ K + FV + + DA A+ Sbjct: 119 GDLSPEIT-TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177 Query: 687 STILDRVVTVEYAFRDDDNERDDRHGSPRQGR 782 + R + +A R + + + +Q R Sbjct: 178 QWLGGRQIRTNWATRKPPAPKSTQETNTKQLR 209
>Q6URK4:ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 - Rattus norvegicus| (Rat) Length = 379 Score = 39.7 bits (91), Expect = 0.031 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + +L F KYG I I++ K G+AFV F D Sbjct: 120 GAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT 179 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 180 VDKIVVQKYHTINGHN 195
>Q8BG05:ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 - Mus musculus (Mouse)| Length = 379 Score = 39.7 bits (91), Expect = 0.031 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + +L F KYG I I++ K G+AFV F D Sbjct: 120 GAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT 179 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 180 VDKIVVQKYHTINGHN 195
>P51991:ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 - Homo sapiens (Human)| Length = 378 Score = 39.7 bits (91), Expect = 0.031 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + +L F KYG I I++ K G+AFV F D Sbjct: 120 GAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT 179 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 180 VDKIVVQKYHTINGHN 195
>P32831:NGR1_YEAST Negative growth regulatory protein NGR1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 672 Score = 39.7 bits (91), Expect = 0.031 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGY--AFVYFQDERDAEDAIRRLSN 407 T VF G +T + L LF +GPI + I +G FV F+ DAE +I+ L Sbjct: 358 TNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQG 417 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGA 500 G S RLS W R K GA Sbjct: 418 FIVGGSPIRLS--WGRPSSSNAKTNSTIMGA 446 Score = 33.1 bits (74), Expect = 2.9 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 510 PTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRI--RKNFAFVQYEMQEDASVAV 671 PT T + +T + F+P+G I N+RI KN FV++E + DA ++ Sbjct: 357 PTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASI 412
>Q29RT0:HNRPG_BOVIN Heterogeneous nuclear ribonucleoprotein G - Bos taurus (Bovine)| Length = 396 Score = 39.7 bits (91), Expect = 0.031 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 14/98 (14%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRL 401 +F G + ET + LE F KYG I R + G+AF+ F+ DA+ A+R + Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69 Query: 402 SNAEFGHSRRRL------SVEWSRQEEPVPKNRDRPTG 497 + ++ + E R+ P+ ++R R G Sbjct: 70 NGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGRSRG 107
>Q9YGW7:DAZL_DANRE Deleted in azoospermia-like - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 229 Score = 39.7 bits (91), Expect = 0.031 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Frame = +3 Query: 219 EGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERD 377 EGK +T +F G D + ++++ F+KYG ++ + I + GY FVYF ++ D Sbjct: 41 EGK-MTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVD 99 Query: 378 AEDAI 392 + + Sbjct: 100 IQTIV 104
>Q24207:BOULE_DROME Protein boule - Drosophila melanogaster (Fruit fly)| Length = 228 Score = 39.7 bits (91), Expect = 0.031 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIR-------RIDIKSGYAFVYFQDERDAE 383 +F G +T ++DL R+FS YG ++ R + GY FV F+ E++A+ Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQ 87
>Q9HC84:MUC5B_HUMAN Mucin-5B precursor - Homo sapiens (Human)| Length = 5703 Score = 39.7 bits (91), Expect = 0.031 Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 16/214 (7%) Frame = +1 Query: 367 TSATLRTQ*GGSATPSSATAGEGSPSNGQGKRSPCPRTATGLQGQMQSPPGRSLLSTLIP 546 T+ T G ATPSS+T G+P + + TATG S PG + + ++ Sbjct: 4594 TTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTI--TATGSTTNPSSTPGTTPIPPVLT 4651 Query: 547 S---APKSWTSRGIFSPTARLQTFVSART-LLSSSMRCRRTPV*PSTRLTRARYWTG**Q 714 S P + +S+ S + R T + T + S TP+ ST T WT Q Sbjct: 4652 SMATTPAATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLWTT---WTVPAQ 4708 Query: 715 LNMPSGMMTMKEMTDMAVP-----GKAVTDTAARDEGVTDMAAPDEAVTDMAVQREPTRA 879 P M TM + + P +T TA A P + + E T Sbjct: 4709 TTTP--MSTMSTIHTSSTPETTHTSTVLTTTATMTRATNSTATPSSTLGTTRILTELTTT 4766 Query: 880 DVPTSAPLAL-------GTEGITVQITTAVHVMI 960 T+A + GT I + +T VM+ Sbjct: 4767 ATTTAATGSTATLSSTPGTTWILTEPSTIATVMV 4800 Score = 32.3 bits (72), Expect = 4.9 Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Frame = +1 Query: 367 TSATLRTQ*GGSATPSSATAGEGSPSNGQGKRSPCPRTATGLQGQMQSPPGRSLLSTLIP 546 T+ T G ATPSS+T G+P + + TATG S PG +T IP Sbjct: 2106 TTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTI--TATGSTTNPSSTPG----TTPIP 2159 Query: 547 SAPKSWTSRGIFSPTARLQTFVSARTLLSSSMRCRRTPV*PSTRLTR------------- 687 + + TA S+ SS++ TP P+T T Sbjct: 2160 P---------VLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTV 2210 Query: 688 ARYWTG**QLNMPSGMMTMKEMTDMAVPGKAVTDTAARDEGVTDMAAP 831 WT + SG++ +T+ P + T A G T + P Sbjct: 2211 CTAWT-----SATSGILGTTHITE---PSTGTSHTPAATTGTTQHSTP 2250 Score = 32.0 bits (71), Expect = 6.4 Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Frame = +1 Query: 367 TSATLRTQ*GGSATPSSATAGEGSPSNGQGKRSPCPRTATGLQGQMQSPPGRSLLSTLIP 546 T+ T G ATPSS+T G+P + + TATG S PG +T IP Sbjct: 3333 TTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTI--TATGSTTNPSSTPG----TTPIP 3386 Query: 547 SAPKSWTSRGIFSPTARLQTFVSARTLLSSSMRCRRTPV*PSTRLTR------------- 687 + + TA S+ SS++ TP P+T T Sbjct: 3387 P---------VLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHTV 3437 Query: 688 ARYWTG**QLNMPSGMMTMKEMTDMAVPGKAVTDTAARDEGVTDMAAP 831 WT + SG++ +T+ P + T A G T + P Sbjct: 3438 PTAWT-----SATSGILGTTHITE---PSTGTSHTPAATTGTTQPSTP 3477
>P19683:ROC4_NICSY 31 kDa ribonucleoprotein, chloroplast precursor - Nicotiana| sylvestris (Wood tobacco) Length = 315 Score = 39.3 bits (90), Expect = 0.040 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRL 401 +F GN Y+ L RLF + G + R D G+ FV +AE A+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 + + ++ R E P +RP + R ++V N P +E+ F Sbjct: 198 NRYDVNGRLLTVNKAARRGERP-----ERPPRTFEQSYR-IYVGNI-PWGIDDARLEQLF 250 Query: 582 QPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +GK+ + R+ + F FV + + S A+ D ++ R + V A Sbjct: 251 SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
>Q57014:RBPA_SYNY3 Putative RNA-binding protein rbpA - Synechocystis sp. (strain PCC| 6803) Length = 101 Score = 39.3 bits (90), Expect = 0.040 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ GN Y+ ++DL +F++YG ++R+ + + G+ FV + + + AI L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 402 SNAEF 416 AE+ Sbjct: 63 DGAEW 67
>Q44560:RBPA_ANASP Putative RNA-binding protein rbpA - Anabaena sp. (strain PCC 7120)| Length = 102 Score = 39.3 bits (90), Expect = 0.040 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 ++ GN YE Q L +F++YG ++R+ + + G+ FV E + AI L Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEAL 62 Query: 402 SNAEF 416 AE+ Sbjct: 63 DGAEW 67
>P42696:RBM34_HUMAN RNA-binding protein 34 - Homo sapiens (Human)| Length = 430 Score = 39.3 bits (90), Expect = 0.040 Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 39/219 (17%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI-------------------------DIKSG 344 R VF GN + L+ F +YG I + D K+ Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244 Query: 345 YAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTL 524 A+V F++E A A++R R R+ D + ++ R++ Sbjct: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRV---------------DLASETSSRDKRSV 289 Query: 525 FVINFDPVRTKVVDIERHFQPYGKIANIR--------IRKNFAFVQYEMQEDASVAVNKT 680 FV N P + + IE+HF G I +R I K F +V +E + +A+ K Sbjct: 290 FVGNL-PYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KL 347 Query: 681 DKSTILDRVVTV------EYAFRDDDNERDDRHGSPRQG 779 + S ++ R + V E + + N R P+QG Sbjct: 348 NNSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQG 386
>P38996:NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 - Saccharomyces| cerevisiae (Baker's yeast) Length = 802 Score = 39.3 bits (90), Expect = 0.040 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 246 VFCGNFDYET-RQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAI 392 +F GN + + DL R+FS YG I +I+IK+ + F+ F + + DAI Sbjct: 332 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAI 381 Score = 35.0 bits (79), Expect = 0.76 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +3 Query: 510 PTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAV 671 P LF+ N D+ R F PYG I I I+ F F+Q++ + A+ Sbjct: 328 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAI 381
>P25555:GBP2_YEAST Single-strand telomeric DNA-binding protein GBP2 - Saccharomyces| cerevisiae (Baker's yeast) Length = 427 Score = 39.3 bits (90), Expect = 0.040 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIK-------SGYAFVYFQDERDAEDAIRRLS 404 ++C N + T +SDL LF G I ++K +G A V +++ DA+ I++L+ Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410 Query: 405 NAEFGHSRRRLS 440 N +G ++S Sbjct: 411 NYNYGGCSLQIS 422
>Q804A5:EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A - Xenopus laevis| (African clawed frog) Length = 218 Score = 39.3 bits (90), Expect = 0.040 Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 8/98 (8%) Frame = +3 Query: 219 EGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDER 374 E K + R V+ GN DY DLE FS G I RI I GYA++ F ER Sbjct: 86 EKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFA-ER 144 Query: 375 DAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDR 488 ++ DA + F R + V R P + DR Sbjct: 145 NSVDAAVTMDETVF--RGRTIKVLPKRTNMPGISSTDR 180 Score = 33.5 bits (75), Expect = 2.2 Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 15/138 (10%) Frame = +3 Query: 486 RPTGADAKPT---RTLFVINFDPVRTKVVDIERHFQPYGKIANIRIR--------KNFAF 632 RP A+ K R+++V N D T D+E HF G I I I K +A+ Sbjct: 80 RPLSAEEKKEIDKRSVYVGNVDYGGT-AQDLEAHFSSCGSINRITILCDKFSGHPKGYAY 138 Query: 633 VQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD----DDNERDDRHGSPRQGRDRYGSP 800 +++ + AV D++ R + V + +R G PR R Y Sbjct: 139 IEFAERNSVDAAVTM-DETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNY--- 194 Query: 801 RRGGDRYGSPRRGGDRYG 854 +RG G P RG R G Sbjct: 195 QRGQRPRGRPFRGCGRPG 212
>O13759:CSX1_SCHPO RNA-binding post-transcriptional regulator csx1 -| Schizosaccharomyces pombe (Fission yeast) Length = 632 Score = 39.3 bits (90), Expect = 0.040 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 26/169 (15%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRR-----IDIKSG----YAFVYFQDERDAEDAIRR 398 +F G+ T SDL F P +D +G Y FV F E++ + A+ Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243 Query: 399 LSNAEFGHSRRRLSVEWSRQEEPVPKNRDR---PTG-ADAKPTRTLFVINFDPVRTKVV- 563 + R+SV + + + PT ++ +P + L + DP+ T V Sbjct: 244 MQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDL--CSMDPLNTTVFV 301 Query: 564 ----------DIERHFQPYGKIANIRI--RKNFAFVQYEMQEDASVAVN 674 D++ FQP+G+I NI+I K FVQY + A A+N Sbjct: 302 GGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAIN 350
>Q28521:ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 - Macaca mulatta (Rhesus| macaque) Length = 320 Score = 38.9 bits (89), Expect = 0.052 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + L F +YG I I+I K G+AFV F D Sbjct: 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNS 158 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 159 VDKIVIQKYHTVNGHN 174
>Q5M9F1:RBM34_RAT RNA-binding protein 34 - Rattus norvegicus (Rat)| Length = 428 Score = 38.9 bits (89), Expect = 0.052 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 33/192 (17%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI-------------------------DIKSG 344 R VF GN + L+ F +YG + + D KS Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242 Query: 345 YAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTL 524 A+V F++ER A A++R + A+ R+ V+ + + +RD+ R++ Sbjct: 243 NAYVVFKEERAAAKALQR-NGAQIAEG-FRIRVDLASE----TASRDK---------RSV 287 Query: 525 FVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAVNKT 680 FV N P R +E HF G I +RI +N F +V +E + +A+ K Sbjct: 288 FVGNL-PYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 345 Query: 681 DKSTILDRVVTV 716 + S ++ R + V Sbjct: 346 NNSELMGRKLRV 357
>Q9QZH3:PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E - Mus musculus (Mouse)| Length = 301 Score = 38.9 bits (89), Expect = 0.052 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +3 Query: 579 FQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 F P+G I +I+I + FAFV++E+ EDA+ A++ ++S + R + V A Sbjct: 26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>Q9UNP9:PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E - Homo sapiens (Human)| Length = 301 Score = 38.9 bits (89), Expect = 0.052 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +3 Query: 579 FQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 F P+G I +I+I + FAFV++E+ EDA+ A++ ++S + R + V A Sbjct: 26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>Q9V3G3:PPIE_DROME Peptidyl-prolyl cis-trans isomerase E - Drosophila melanogaster| (Fruit fly) Length = 300 Score = 38.9 bits (89), Expect = 0.052 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Frame = +3 Query: 579 FQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 F P+G IA+I++ + FAF++YE EDA+ A++ + S + R + V A Sbjct: 26 FIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>Q9ZQA8:PABPX_ARATH Probable polyadenylate-binding protein At2g36660 - Arabidopsis| thaliana (Mouse-ear cress) Length = 609 Score = 38.9 bits (89), Expect = 0.052 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 21/188 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERDAEDAIRRLS 404 ++ N D + + L F+++G I + I GYAFV F + DA A ++ Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 405 NAEF-------GHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVV 563 +F G ++++ E +E+ K+ ++ A ++V N + T+ Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS---NIYVKNVNVAVTE-E 318 Query: 564 DIERHFQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEY 722 ++ +HF G I + ++ K F FV + E+A AV + + V Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378 Query: 723 AFRDDDNE 746 A + +D + Sbjct: 379 AQKKEDRK 386 Score = 35.8 bits (81), Expect = 0.44 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 14/182 (7%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS-------GYAFVYFQDERDAEDAIRRLS 404 VF N + L+ +F K+G I + + GY FV F+ E A AI+ L+ Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 + + + + P+ + L++ N D ++ + + F Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEK----------YTNLYMKNLDADVSEDL-LREKFA 222 Query: 585 PYGKIANIRIRKN-------FAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 +GKI ++ I K+ +AFV ++ EDA A + + + + V A + + Sbjct: 223 EFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282 Query: 744 ER 749 E+ Sbjct: 283 EQ 284
>P70372:ELAV1_MOUSE ELAV-like protein 1 - Mus musculus (Mouse)| Length = 326 Score = 38.9 bits (89), Expect = 0.052 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 22/196 (11%) Frame = +3 Query: 279 QSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRR 434 Q +L LFS G + + GY FV + +DAE AI L+ + Sbjct: 33 QEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL--QSKT 90 Query: 435 LSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRI 614 + V ++R V K+ + L++ T+ D+E F +G+I N R+ Sbjct: 91 IKVSYARPSSEVIKDAN------------LYISGLPRTMTQ-KDVEDMFSRFGRIINSRV 137 Query: 615 --------RKNFAFVQYEMQEDASVAVNK--TDKSTILDRVVTVEYAFRDDDNER----D 752 + AF++++ + +A A+ K +TV++A + N+ Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKNMALLS 197 Query: 753 DRHGSPRQGRDRYGSP 800 + SP + R+G P Sbjct: 198 QLYHSPAR---RFGGP 210
>Q9JLI8:SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 - Mus| musculus (Mouse) Length = 962 Score = 38.5 bits (88), Expect = 0.068 Identities = 55/232 (23%), Positives = 89/232 (38%), Gaps = 18/232 (7%) Frame = +3 Query: 237 MRPVF--CGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNA 410 +RP+F CG + +FS G R GY +V F +E+ A+ A+ Sbjct: 722 LRPLFEVCGEV------VQIRPIFSNRGDFR------GYCYVEFGEEKSAQQALELDRKI 769 Query: 411 EFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTL----FVINFDPVRTKVVDIERH 578 G R + V P P + + TL I+ P ++E Sbjct: 770 VEG---RPMFVS------PCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDI 820 Query: 579 FQPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRD- 734 + +G + ++R+ K A+V+YE + AS AV K D TI + V+ V + Sbjct: 821 CKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIRENVIKVAISNPPQ 880 Query: 735 ----DDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 + E G+P R YG+ +G + R R G+ +A G Sbjct: 881 RKVPEKPEVRTAPGAPMLPRQMYGARGKGRTQLSLLPRALQRQGAAPQAENG 932
>Q754W7:NCBP2_ASHGO Nuclear cap-binding protein subunit 2 - Ashbya gossypii (Yeast)| (Eremothecium gossypii) Length = 218 Score = 38.5 bits (88), Expect = 0.068 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Frame = +3 Query: 207 GWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYF 362 G E K +T ++ GN + T + L LFSK G I +I + G+ F+ + Sbjct: 35 GLEELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIY 94 Query: 363 QDERDAEDAIRRLSNAE 413 Q ++A A++ LS + Sbjct: 95 QTPQEALAALKYLSKTK 111
>O00425:IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 - Homo sapiens| (Human) Length = 579 Score = 38.5 bits (88), Expect = 0.068 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 11/209 (5%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKY-----GPIRRIDIKSGYAFVYFQDERDAEDAIRRL 401 M ++ GN SDLE +F GP +K+GYAFV DE A AI L Sbjct: 1 MNKLYIGNLSENAAPSDLESIFKDAKIPVSGPFL---VKTGYAFVDCPDESWALKAIEAL 57 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDP-VRTKVVDIERH 578 S H + + VE S VPK + R L + N P ++ +V+D Sbjct: 58 SGKIELHG-KPIEVEHS-----VPKR---------QRIRKLQIRNIPPHLQWEVLD--SL 100 Query: 579 FQPYGKI-----ANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDN 743 YG + N V Y ++ A A++K + + + + V Y + Sbjct: 101 LVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI----PD 156 Query: 744 ERDDRHGSPRQGRDRYGSPRRGGDRYGSP 830 E + +Q R R G +RG R GSP Sbjct: 157 EMAAQQNPLQQPRGRRGLGQRGSSRQGSP 185
>Q6GR16:EPABB_XENLA Embryonic polyadenylate-binding protein-B - Xenopus laevis (African| clawed frog) Length = 629 Score = 38.5 bits (88), Expect = 0.068 Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 ++ G+ + ++ L FS GPI I + GYA++ FQ DAE A+ + Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINF-DPVRTKVVDIERH 578 + R + + WS+ R G +F+ N D + K + Sbjct: 73 NFEVI--KGRPIRIMWSQ----------RDPGLRKSGVGNVFIKNLDDSIDNKA--LYDT 118 Query: 579 FQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 F +G I + ++ + + FV +E QE A+ A+ + + DR V V Sbjct: 119 FSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>P04256:ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 - Rattus norvegicus| (Rat) Length = 320 Score = 38.1 bits (87), Expect = 0.089 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + L F +YG I I+I K G+AFV F D Sbjct: 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 159 VDKIVIQKYHTVNGHN 174
>P49312:ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 - Mus musculus (Mouse)| Length = 320 Score = 38.1 bits (87), Expect = 0.089 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + L F +YG I I+I K G+AFV F D Sbjct: 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 159 VDKIVIQKYHTVNGHN 174
>P09651:ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 - Homo sapiens (Human)| Length = 372 Score = 38.1 bits (87), Expect = 0.089 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + L F +YG I I+I K G+AFV F D Sbjct: 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 159 VDKIVIQKYHTVNGHN 174
>P09867:ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 - Bos taurus (Bovine)| Length = 195 Score = 38.1 bits (87), Expect = 0.089 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G LT++ +F G +T + L F +YG I I+I K G+AFV F D Sbjct: 98 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 157 Query: 378 AEDAIRRLSNAEFGHS 425 + + + + GH+ Sbjct: 158 VDKIVIQKYHTVNGHN 173
>Q6P616:RBM22_XENTR Pre-mRNA-splicing factor RBM22 - Xenopus tropicalis (Western clawed| frog) (Silurana tropicalis) Length = 417 Score = 38.1 bits (87), Expect = 0.089 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = +3 Query: 219 EGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAEDAI 392 E K +T ++ G +S+L F ++G IR I + + AF+ F + AE A Sbjct: 227 EDKSITT--LYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAA 284 Query: 393 RRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGAD 503 + N + RR L+V+W R + K R+R +D Sbjct: 285 EKSFNKLIVNGRR-LNVKWGRSQAARGKERERDGSSD 320
>Q5ZM16:RBM22_CHICK Pre-mRNA-splicing factor RBM22 - Gallus gallus (Chicken)| Length = 420 Score = 38.1 bits (87), Expect = 0.089 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAEDAIRRLSN 407 T+ ++ G +SDL F ++G IR I + + AF+ F + AE A + N Sbjct: 230 TITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFN 289 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDR 488 + RR L+V+W R + K +D+ Sbjct: 290 KLIVNGRR-LNVKWGRSQAARGKEKDK 315
>Q3B7L8:RBM22_BOVIN Pre-mRNA-splicing factor RBM22 - Bos taurus (Bovine)| Length = 420 Score = 38.1 bits (87), Expect = 0.089 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +3 Query: 234 TMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAEDAIRRLSN 407 T+ ++ G ++DL F ++G IR I + + AF+ F + AE A + N Sbjct: 230 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFN 289 Query: 408 AEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADA 506 +F + RRL+V+W R + K +++ D+ Sbjct: 290 -KFIVNGRRLNVKWGRSQAARGKEKEKDGTTDS 321
>Q5ARI5:PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 - Emericella nidulans| (Aspergillus nidulans) Length = 461 Score = 38.1 bits (87), Expect = 0.089 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 8/145 (5%) Frame = +3 Query: 315 PIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPT 494 P + K+ A V D+ D D + S + R E Q + D P Sbjct: 186 PESPLPTKAQLATVRIADDEDLGDDMDEASMEKLRRER-----EARAQALTLEMVGDLPF 240 Query: 495 GADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQ 650 P LFV +PV T+ D+E F +GKI + + ++ +AF+++E Q Sbjct: 241 AEVKPPENVLFVCKLNPV-TQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQ 299 Query: 651 EDASVAVNKTDKSTILDRVVTVEYA 725 +D A K I D + V+++ Sbjct: 300 KDCEQAYFKMQGVLIDDHRIHVDFS 324 Score = 36.2 bits (82), Expect = 0.34 Identities = 56/212 (26%), Positives = 79/212 (37%), Gaps = 20/212 (9%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLS-------- 404 T+ DLE +FS++G I ++ ++G YAF+ F+ ++D E A ++ Sbjct: 259 TQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHR 318 Query: 405 -NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 + +F S +LS W + K R G V +E+ Sbjct: 319 IHVDFSQSVSKLSESW---RDATVKKRSAQRGGFG----------------GVAGLEKKR 359 Query: 582 QPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRH 761 Q Y N R R N Y M D N +S +R Y+ N DR Sbjct: 360 Q-YRASENARERAN-----YNMVFDK----NDNRRSAPRER----SYSRSPQRNNYRDRR 405 Query: 762 GSPRQGRDRYGSPRRGGDRYGS---PRRGGDR 848 S RD Y S R GDR S P R DR Sbjct: 406 DSRSPRRDSYRS--RYGDRSNSRSPPLRDRDR 435
>Q5KNY5:PPIL4_CRYNE Peptidyl-prolyl cis-trans isomerase-like 4 - Cryptococcus| neoformans (Filobasidiella neoformans) Length = 504 Score = 38.1 bits (87), Expect = 0.089 Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 33/233 (14%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLSNAEFGHSR 428 T+ DLE +FS++G I ++ KSG YAF+ F + AE A ++ N Sbjct: 257 TQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKMQNVLV--DD 314 Query: 429 RRLSVEWSRQEEPVPK---NRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF------ 581 RR+ V++S+ + + + PTG + R N+ R D +R Sbjct: 315 RRIWVDFSQSVAKMNRSMLSSSNPTGRGGRGGRGGRGGNYSGRRDGDRDRDRDSGWSSRR 374 Query: 582 ------------QPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYA 725 P ++ + + V ++ + S +K D+ R Sbjct: 375 DAPDSRRPPPPPVPMSSSRDVGGTEGYGLV-FDDRSAPSSRGSKRDRERSPKRE------ 427 Query: 726 FRDDDNERDDRHGSPRQGRDRY--GSPRRGGDRY--GSPRRGGDRYGSPKRAN 872 RD + ERD SPR+ RDR SPRR DR RR DR G + N Sbjct: 428 -RDRERERD---RSPRRDRDRERDRSPRRDRDRERDDHDRRDRDRNGRDRERN 476
>Q03251:GRP8_ARATH Glycine-rich RNA-binding protein 8 - Arabidopsis thaliana| (Mouse-ear cress) Length = 169 Score = 38.1 bits (87), Expect = 0.089 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = +3 Query: 249 FCGNFDYETRQSDLERLFSKYGPI--------RRIDIKSGYAFVYFQDERDAEDAIRRLS 404 F G + T DL+R FS++G + R G+ FV F+DE+ DAI ++ Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 405 NAE 413 E Sbjct: 69 GKE 71
>P41891:GAR2_SCHPO Protein gar2 - Schizosaccharomyces pombe (Fission yeast)| Length = 500 Score = 38.1 bits (87), Expect = 0.089 Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 27/225 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 VF G + L + F +YG I + GY +V F+ A+ A+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGAD---AKPTRTLFVINFDPVRTKVVDIE 572 E L + R P P + R ++P+ T+FV N T+ D+ Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATED-DLS 383 Query: 573 RHFQPYGKIANIRIR--------KNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAF 728 F G I +IR+ K F +V + + A V + + I R ++++ Sbjct: 384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFST 442 Query: 729 -RDDDNERDDRHGSPRQG----RDRYGSPR---RGGDRYGSPRRG 839 R R R G +G R +G R RGG R G+P RG Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487
>Q98SP8:EPABA_XENLA Embryonic polyadenylate-binding protein-A - Xenopus laevis (African| clawed frog) Length = 629 Score = 38.1 bits (87), Expect = 0.089 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Frame = +3 Query: 222 GKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERD 377 G G + ++ G+ + ++ L FS GPI I + YA++ FQ D Sbjct: 5 GAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPAD 64 Query: 378 AEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFD-PVRT 554 AE A+ ++ R + + WS+ R G +F+ N D + Sbjct: 65 AERALDTMNFEVI--KGRPIRIMWSQ----------RDPGLRKSGVGNVFIKNLDESIDN 112 Query: 555 KVVDIERHFQPYGKIANIRI------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 K + F +G I + ++ + + FV +E E A+ A+ + + DR V V Sbjct: 113 KA--LYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170
>Q4R535:CELF4_MACFA CUG-BP- and ETR-3-like factor 4 - Macaca fascicularis (Crab eating| macaque) (Cynomolgus monkey) Length = 474 Score = 38.1 bits (87), Expect = 0.089 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 16/195 (8%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F G + DL+ LF ++G I + + G AF+ + + A A L Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115 Query: 402 SNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHF 581 H ++ L P+ + +P ++++ R LFV + +++ D+ R F Sbjct: 116 ------HEQKTLP----GMNRPI---QVKPADSESRGDRKLFVGMLNKQQSED-DVRRLF 161 Query: 582 QPYGKIANIRI-------RKNFAFVQYEMQEDASVAVNKTDKS-TILDRVVTVEYAFRDD 737 + +G I I K AFV+Y +A A+N S T+ ++ F D Sbjct: 162 EAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221 Query: 738 DNERDDRHGSPRQGR 782 D ER R G+ Sbjct: 222 DKERTMRRMQQMAGQ 236
>Q5YD48:ACF_MOUSE APOBEC1 complementation factor - Mus musculus (Mouse)| Length = 595 Score = 38.1 bits (87), Expect = 0.089 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 +F G + + +L L K G I + + GYAFV F ++++A++AI++L+ Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 N E + R L V S V R G R + V VVD+ Sbjct: 118 NYEI-RTGRLLGVCAS-----VDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDV----I 167 Query: 585 PYGKIANIRIRKNFAFVQYEMQEDASVA 668 Y A+ + FAFV+YE A++A Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMA 195 Score = 36.2 bits (82), Expect = 0.34 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 G+AFV ++ R A A RRL ++V+W+ E V D T + K Sbjct: 180 GFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEV----DEDTMSSVK---I 232 Query: 522 LFVINFDPVRTKVVDIERHFQPY--GKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTI 695 L+V N + T IE+ F G + ++ +++AFV + +EDA V K + Sbjct: 233 LYVRNL-MLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDA-VEAMKALNGKV 290 Query: 696 LD 701 LD Sbjct: 291 LD 292
>Q499V6:ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Rattus norvegicus (Rat) Length = 217 Score = 37.7 bits (86), Expect = 0.12 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + +DL R+FSKYG + ++ I G AF+ F D+ Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61 Query: 372 RDAEDAIRRLSNAE 413 A + R ++N + Sbjct: 62 DSALNCTRAINNKQ 75
>Q9CZ96:ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Mus musculus (Mouse) Length = 217 Score = 37.7 bits (86), Expect = 0.12 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + +DL R+FSKYG + ++ I G AF+ F D+ Sbjct: 2 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61 Query: 372 RDAEDAIRRLSNAE 413 A + R ++N + Sbjct: 62 DSALNCTRAINNKQ 75
>P07909:ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 - Drosophila| melanogaster (Fruit fly) Length = 365 Score = 37.7 bits (86), Expect = 0.12 Identities = 59/244 (24%), Positives = 95/244 (38%), Gaps = 37/244 (15%) Frame = +3 Query: 237 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 416 MR +F G DY T +L+ F K+G I +D+ V +D R R + Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNI--VDV------VVMKDPRTKRS--RGFGFITY 79 Query: 417 GHSRRRLSVEWSRQE-------EP---VPKNRDRPTGADAKPTRTLFV--INFDPVRTKV 560 HS + SR EP VP+ A A + LFV + D + Sbjct: 80 SHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA-TVKKLFVGALKDDHDEQSI 138 Query: 561 VDIERHFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTV 716 D +FQ +G I +I I ++ FAFV+++ + V + + + ++V V Sbjct: 139 RD---YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDV 194 Query: 717 EYAF--RDDDNERDDRHGSP---------RQGRDRYGSP------RRGGDRYGSPRRGGD 845 + A ++D G P G YG+ GG+ +G+ R G D Sbjct: 195 KKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGND 254 Query: 846 RYGS 857 +G+ Sbjct: 255 NWGN 258
>Q3ZCC5:RBM18_BOVIN Probable RNA-binding protein 18 - Bos taurus (Bovine)| Length = 190 Score = 37.7 bits (86), Expect = 0.12 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI-----------KSGYAFVYF 362 SEG ++ GN D + + L RL K+G +++ D GY FV F Sbjct: 17 SEGSLQEGHRLWIGNLDPKITEYHLLRLLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNF 76 Query: 363 QDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQE 461 + +++AE AI+ L N + S ++L V W+ + Sbjct: 77 ETKQEAEQAIQCL-NGKLALS-KKLVVRWAHAQ 107
>Q923K9:ACF_RAT APOBEC1 complementation factor - Rattus norvegicus (Rat)| Length = 594 Score = 37.7 bits (86), Expect = 0.12 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYAFVYFQDERDAEDAIRRLS 404 +F G + + +L L K G I + + GYAFV F ++++A++AI++L+ Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117 Query: 405 NAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 584 N E + R L V S V R G R + V VVD+ Sbjct: 118 NYEI-RNGRLLGVCAS-----VDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDV----I 167 Query: 585 PYGKIANIRIRKNFAFVQYEMQEDASVA 668 Y A+ + FAFV+YE A++A Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMA 195 Score = 36.2 bits (82), Expect = 0.34 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 G+AFV ++ R A A RRL ++V+W+ E V D T + K Sbjct: 180 GFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEV----DEDTMSSVK---I 232 Query: 522 LFVINFDPVRTKVVDIERHFQPY--GKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTI 695 L+V N + T IE+ F G + ++ +++AFV + +EDA V K + Sbjct: 233 LYVRNL-MLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDA-VEAMKALNGKV 290 Query: 696 LD 701 LD Sbjct: 291 LD 292
>Q5R9H4:ACF_PONPY APOBEC1 complementation factor - Pongo pygmaeus (Orangutan)| Length = 587 Score = 37.7 bits (86), Expect = 0.12 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 7/169 (4%) Frame = +3 Query: 192 PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYA 350 PGW G +F G + + +L L K G I + + GYA Sbjct: 45 PGWDAAPPERGC-----EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYA 99 Query: 351 FVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFV 530 FV F ++ +A++AI++L+N E + R L V S V R G R + Sbjct: 100 FVTFSNKLEAKNAIKQLNNYEI-RNGRLLGVCAS-----VDNCRLFVGGIPKTKKREEIL 153 Query: 531 INFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNK 677 V VVD+ Y A+ + FAFV+YE A++A K Sbjct: 154 SEMKKVTEGVVDV----IVYPSAADKTKNRGFAFVEYESHRAAAMARRK 198 Score = 34.7 bits (78), Expect = 0.99 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 G+AFV ++ R A A R+L ++V+W+ E V D T + K Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEV----DEDTMSSVK---I 232 Query: 522 LFVINFDPVRTKVVDIERHFQPY--GKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTI 695 L+V N + T IE+ F G + ++ +++AFV + +EDA V K + Sbjct: 233 LYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDA-VEAMKALNGKV 290 Query: 696 LD 701 LD Sbjct: 291 LD 292
>Q5SP50:ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1 -| Danio rerio (Zebrafish) (Brachydanio rerio) Length = 218 Score = 37.4 bits (85), Expect = 0.15 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%) Frame = +3 Query: 216 SEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDE 371 S G + V+ N + SD+ +L SKYG + ++ I G AFV F D Sbjct: 2 SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61 Query: 372 RDAEDAIRRLSNAE-FGHS-RRRLSVEWSRQEEPVPK 476 A + R L+N + FG + ++++ R E + K Sbjct: 62 ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRK 98
>Q09100:RNP24_SCHPO RNA-binding protein rnp24 - Schizosaccharomyces pombe (Fission| yeast) Length = 369 Score = 37.4 bits (85), Expect = 0.15 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRRL 401 +F GN D+ET +DL+ F + G IRR+ + + G+ FV F D A+ Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM--- 286 Query: 402 SNAEFGHSRRRL 437 E GH+ RL Sbjct: 287 ---ELGHNSWRL 295
>Q7ZXB5:RBM22_XENLA Pre-mRNA-splicing factor RBM22 - Xenopus laevis (African clawed| frog) Length = 417 Score = 37.4 bits (85), Expect = 0.15 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Frame = +3 Query: 219 EGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--KSGYAFVYFQDERDAEDAI 392 E K +T ++ G +S+L F ++G IR I + + AF+ F + AE A Sbjct: 227 EDKSITT--LYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAA 284 Query: 393 RRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGAD 503 + N + RR L+V+W R + K R+ D Sbjct: 285 EKSFNKLIVNGRR-LNVKWGRSQAARGKEREHDGSGD 320
>Q4WJT7:MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 - Aspergillus| fumigatus (Sartorya fumigata) Length = 825 Score = 37.4 bits (85), Expect = 0.15 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Frame = +3 Query: 333 IKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRP-TGADAK 509 + G+ FV F+ + A+ A+ + + + L V S + + R R T Sbjct: 641 LSMGFGFVDFRTKAQAQAALAAMDGYKL--DQHELVVRASNKAMDAAEERRREDTAKKIA 698 Query: 510 PTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNF-------AFVQYEMQEDASVA 668 RT +I P + D+ F YG++ ++R+ K F F + +A A Sbjct: 699 ARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENA 758 Query: 669 VNKTDKSTILDRVVTVEYA 725 ++ + +L R + +E+A Sbjct: 759 MDALKNTHLLGRRLVLEFA 777 Score = 36.6 bits (83), Expect = 0.26 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +3 Query: 246 VFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIRRL 401 +F N Y+ +SDLE +FSK+G I I + G+A+V + + A A + L Sbjct: 303 LFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKEL 362 Query: 402 SNAEF 416 F Sbjct: 363 DGKHF 367
>Q27750:H2BS2_PSAMI Histone H2B.2, sperm - Psammechinus miliaris (Sand sea urchin)| Length = 143 Score = 37.4 bits (85), Expect = 0.15 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 765 SPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 SP + R GSPR+G R GSP+RGG KRA +G Sbjct: 4 SPSKSSPRKGSPRKGSPRKGSPKRGGK---GAKRAGKG 38 Score = 33.9 bits (76), Expect = 1.7 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +3 Query: 756 RHGSPRQGRDRYGSPRRGGDRYGSPRRGGDR 848 R GSPR+G R GSP+RGG +GG R Sbjct: 11 RKGSPRKGSPRKGSPKRGGKGAKRAGKGGRR 41
>P06146:H2BS2_LYTPI Histone H2B.2, sperm - Lytechinus pictus (Painted sea urchin)| Length = 143 Score = 37.4 bits (85), Expect = 0.15 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 765 SPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQG 878 SP + R GSPR+G R GSP+RGG KRA +G Sbjct: 4 SPSKSSPRKGSPRKGSPRKGSPKRGGK---GAKRAGKG 38 Score = 35.4 bits (80), Expect = 0.58 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = +3 Query: 756 RHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKR 866 R GSPR+G R GSP+RGG +GG R KR Sbjct: 11 RKGSPRKGSPRKGSPKRGGKGAKRAGKGGRRRNVVKR 47
>Q9NQ94:ACF_HUMAN APOBEC1 complementation factor - Homo sapiens (Human)| Length = 594 Score = 37.4 bits (85), Expect = 0.15 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 7/169 (4%) Frame = +3 Query: 192 PGWLVGWESEGKGLTMRPVFCGNFDYETRQSDLERLFSKYGPIRRIDI-------KSGYA 350 PGW G +F G + + +L L K G I + + GYA Sbjct: 45 PGWDAAPPERGC-----EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYA 99 Query: 351 FVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFV 530 FV F ++ +A++AI++L+N E + R L V S V R G R + Sbjct: 100 FVTFSNKVEAKNAIKQLNNYEI-RNGRLLGVCAS-----VDNCRLFVGGIPKTKKREEIL 153 Query: 531 INFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNK 677 V VVD+ Y A+ + FAFV+YE A++A K Sbjct: 154 SEMKKVTEGVVDV----IVYPSAADKTKNRGFAFVEYESHRAAAMARRK 198 Score = 34.7 bits (78), Expect = 0.99 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 G+AFV ++ R A A R+L ++V+W+ E V D T + K Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEV----DEDTMSSVK---I 232 Query: 522 LFVINFDPVRTKVVDIERHFQPY--GKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTI 695 L+V N + T IE+ F G + ++ +++AFV + +EDA V K + Sbjct: 233 LYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDA-VEAMKALNGKV 290 Query: 696 LD 701 LD Sbjct: 291 LD 292
>Q5RBU8:ROA2_PONPY Heterogeneous nuclear ribonucleoproteins A2/B1 - Pongo pygmaeus| (Orangutan) Length = 353 Score = 37.0 bits (84), Expect = 0.20 Identities = 59/248 (23%), Positives = 86/248 (34%), Gaps = 35/248 (14%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDI--------KSGYAFVYFQDERDAEDAIR 395 R +F G +ET + L + ++G + + G+ FV F + + A+ Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 79 Query: 396 RLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIER 575 A HS VE R V + GA + LFV T+ + Sbjct: 80 ----AARPHSIDGRVVEPKRA---VAREESGKPGAHVT-VKKLFVGGIKE-DTEEHHLRD 130 Query: 576 HFQPYGKIANIRI--------RKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFR 731 +F+ YGKI I I ++ F FV ++ + V + TI V A Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHH-TINGHNAEVRKALS 189 Query: 732 DDDNERDDRHGSPRQGRDRYGSPRRGG---------------DRYGSPRRGGDRY----G 854 + + S R G +G R GG D YGS R GD Y G Sbjct: 190 RQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGG 249 Query: 855 SPKRANQG 878 P N G Sbjct: 250 GPGGGNFG 257
>Q8C5L7:RBM34_MOUSE RNA-binding protein 34 - Mus musculus (Mouse)| Length = 375 Score = 37.0 bits (84), Expect = 0.20 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%) Frame = +3 Query: 240 RPVFCGNFDYETRQSDLERLFSKYGPIRRI-------------------------DIKSG 344 R VF GN + L+ F +YG + + D KS Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248 Query: 345 YAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRTL 524 A+V F+DE A A++R + A+ R+ V+ + + +RD+ R++ Sbjct: 249 NAYVVFKDESAAAKALQR-NGAQIAEG-FRIRVDLASE----TASRDK---------RSV 293 Query: 525 FVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQYEMQEDASVAVNKT 680 FV N P + + +E HF G I +RI +N F +V +E + +A+ K Sbjct: 294 FVGNL-PYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 351 Query: 681 DKSTILDRVVTV 716 + S ++ R + V Sbjct: 352 NNSELMGRKLRV 363
>Q4WAQ9:PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 - Aspergillus fumigatus| (Sartorya fumigata) Length = 459 Score = 37.0 bits (84), Expect = 0.20 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 17/76 (22%) Frame = +3 Query: 273 TRQSDLERLFSKYGPIRRIDI----KSG----YAFVYFQDERDAEDAIRRLS-------- 404 T+ DL+ +FS++GPI ++ ++G YAF+ F++++D E A ++ Sbjct: 259 TQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHR 318 Query: 405 -NAEFGHSRRRLSVEW 449 + +F S +LS W Sbjct: 319 IHVDFSQSVSKLSESW 334 Score = 33.1 bits (74), Expect = 2.9 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +3 Query: 483 DRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN--------FAFVQ 638 D P P LFV +PV T+ D++ F +G I + + ++ +AF++ Sbjct: 237 DLPFAEVKPPENVLFVCKLNPV-TQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIE 295 Query: 639 YEMQEDASVAVNKTDKSTILDRVVTVEYA 725 +E Q+D A K I D + V+++ Sbjct: 296 FENQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>Q27K34:PLA2_ORYSA Protein terminal ear1 homolog - Oryza sativa (Rice)| Length = 683 Score = 37.0 bits (84), Expect = 0.20 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 35/183 (19%) Frame = +3 Query: 279 QSDLERLFSKYGPIRRIDIKS----GYAFVYFQDERDAEDAIRRLSNAEFGHSRR----- 431 + ++ R + +G +R +D + G A VYF D R AE A+ + R Sbjct: 111 EDEIARAMAPFGAVRAVDASAVASEGVATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLY 170 Query: 432 -------RLSVEWSRQ--EEPVPKNRDRPTGA--------------DAKPTRTLFVINFD 542 S W + P NR G D +L V+N Sbjct: 171 AAAAAAAASSPTWPPPAWDWPHDDNRGLVLGQAVWAHFAAASTVPDDGASRGSLVVLNSL 230 Query: 543 PVRTKVVDIERHFQPYGKIANIR---IRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVT 713 P + V ++ FQ YG + ++R +R + FV++ DA A+++ + + R + Sbjct: 231 PAMS-VFELREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRALHELNGKELFGRRLV 289 Query: 714 VEY 722 VEY Sbjct: 290 VEY 292
>Q9UT83:MUG28_SCHPO Meiotically up-regulated gene 28 protein - Schizosaccharomyces| pombe (Fission yeast) Length = 609 Score = 37.0 bits (84), Expect = 0.20 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%) Frame = +3 Query: 288 LERLFSKYGPIR--------RIDIKSGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSV 443 LE LFSK+G I+ +I GY FV F +A AI L+ FG ++RL V Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFG--KKRLFV 494 Query: 444 EWSRQEE 464 ++ + E Sbjct: 495 NYAEKRE 501
>P23241:ELAV_DROVI Protein elav - Drosophila virilis (Fruit fly)| Length = 519 Score = 37.0 bits (84), Expect = 0.20 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 12/135 (8%) Frame = +3 Query: 342 GYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRDRPTGADAKPTRT 521 GY FV + +DAE A+ L+ Q + + + RP+ +DA Sbjct: 240 GYGFVNYVRPQDAEQAVNVLNGLRL-------------QNKTIKVSFARPS-SDAIKGAN 285 Query: 522 LFVINFDPVRTKVVDIERHFQPYGKIANIRIRKN---------FAFVQYEMQEDAS---V 665 L+V T+ ++E F P+G I RI +N F++++ +E+A+ + Sbjct: 286 LYVSGLPKTMTQ-QELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAII 344 Query: 666 AVNKTDKSTILDRVV 710 A+N T S+ D +V Sbjct: 345 ALNGTTPSSCTDPIV 359 Score = 32.3 bits (72), Expect = 4.9 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +3 Query: 243 PVFCGNFDYETRQSDLERLFSKYGPIRRIDIKS--------GYAFVYFQDERDAEDAIRR 398 P+F N ET ++ L +LF +G ++ + I GY FV + +A AIR Sbjct: 439 PIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRA 498 Query: 399 LSNAEFGHSRRRLSVEWSR 455 L+ G+ ++S + ++ Sbjct: 499 LNGYTMGNRVLQVSFKTNK 517 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 255,803,770 Number of extensions: 5947790 Number of successful extensions: 20981 Number of sequences better than 10.0: 404 Number of HSP's gapped: 20538 Number of HSP's successfully gapped: 537 Length of query: 468 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 351 Effective length of database: 68,593,924 Effective search space: 24076467324 Effective search space used: 24076467324 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
